Wall clock time and date at job start Tue Mar 31 2020 03:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00369 * 2 1 4 4 H 1.48493 * 109.47471 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46731 * 300.00094 * 3 2 1 6 6 H 1.48496 * 109.46914 * 59.99502 * 3 2 1 7 7 C 1.38820 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99898 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47068 * 179.97438 * 10 9 7 12 12 C 1.35359 * 126.74961 * 95.00162 * 11 10 9 13 13 N 1.35312 * 106.17441 * 180.24929 * 12 11 10 14 14 C 1.46500 * 125.86582 * 179.77310 * 13 12 11 15 15 C 1.53005 * 109.47040 * 124.99824 * 14 13 12 16 16 H 1.08998 * 110.24636 * 55.55305 * 15 14 13 17 17 C 1.55186 * 110.27723 * 177.66418 * 15 14 13 18 18 C 1.54018 * 100.75578 * 154.08116 * 17 15 14 19 19 C 1.52407 * 115.92187 * 96.36405 * 18 17 15 20 20 C 1.54039 * 86.64143 * 93.64065 * 19 18 17 21 21 C 1.52396 * 115.93321 * 198.17710 * 18 17 15 22 22 C 1.53081 * 103.78939 * 327.28643 * 18 17 15 23 23 O 1.43601 * 107.17284 * 19.97168 * 22 18 17 24 24 N 1.28713 * 108.26446 * 359.62122 * 13 12 11 25 25 N 1.28640 * 110.17981 * 0.39068 * 24 13 12 26 26 H 0.96994 * 119.99837 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00307 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47254 * 59.99866 * 10 9 7 29 29 H 1.08996 * 109.47228 * 299.99403 * 10 9 7 30 30 H 1.08002 * 126.90931 * 359.97438 * 12 11 10 31 31 H 1.08994 * 109.46942 * 244.99531 * 14 13 12 32 32 H 1.08995 * 109.47514 * 4.99585 * 14 13 12 33 33 H 1.08999 * 111.15839 * 271.95501 * 17 15 14 34 34 H 1.08999 * 111.15904 * 36.21274 * 17 15 14 35 35 H 1.08991 * 113.68419 * 208.07616 * 19 18 17 36 36 H 1.09002 * 113.68588 * 339.20888 * 19 18 17 37 37 H 1.08999 * 113.56992 * 269.77970 * 20 19 18 38 38 H 1.08997 * 113.63854 * 139.02194 * 20 19 18 39 39 H 1.08996 * 113.68366 * 20.81205 * 21 18 17 40 40 H 1.09002 * 113.68018 * 151.83662 * 21 18 17 41 41 H 1.08996 * 109.89746 * 260.57835 * 22 18 17 42 42 H 1.08998 * 109.89802 * 139.35823 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0788 -4.8022 0.0012 12 6 0.6239 -5.4795 -1.0789 13 7 -0.2349 -6.4116 -0.6052 14 6 -0.9801 -7.3811 -1.4120 15 6 -0.6921 -8.7955 -0.9045 16 1 -0.9224 -8.8690 0.1584 17 6 -1.5182 -9.8342 -1.7089 18 6 -0.6361 -11.0869 -1.5517 19 6 -1.0328 -12.0452 -0.4349 20 6 -1.8423 -12.8083 -1.5003 21 6 -0.8884 -12.2094 -2.5512 22 6 0.7874 -10.5264 -1.4978 23 8 0.6837 -9.1393 -1.1411 24 7 -0.2822 -6.3022 0.6764 25 7 0.4876 -5.3494 1.0692 26 1 -0.4849 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6848 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 0.8894 -5.3072 -2.1116 31 1 -2.0476 -7.1766 -1.3315 32 1 -0.6721 -7.2995 -2.4544 33 1 -2.5008 -9.9863 -1.2623 34 1 -1.6046 -9.5427 -2.7556 35 1 -0.1967 -12.6147 -0.0292 36 1 -1.6495 -11.5859 0.3377 37 1 -2.8709 -12.4613 -1.5975 38 1 -1.7683 -13.8922 -1.4120 39 1 -1.3902 -11.8806 -3.4612 40 1 -0.0108 -12.8246 -2.7493 41 1 1.2617 -10.6240 -2.4743 42 1 1.3681 -11.0605 -0.7457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881395093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:43 Heat of formation + Delta-G solvation = 62.974114 kcal Electronic energy + Delta-G solvation = -22840.298585 eV Core-core repulsion = 19436.740227 eV Total energy + Delta-G solvation = -3403.558358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.17897 -41.61419 -38.23566 -36.88418 -35.62324 -33.65725 -32.23143 -31.55025 -30.05595 -27.73118 -27.34398 -26.71582 -24.78427 -23.47250 -23.35551 -22.64421 -21.48428 -19.63504 -19.26902 -18.34205 -17.71393 -17.31197 -16.70340 -16.46196 -16.05996 -16.00739 -15.73525 -15.56720 -15.08871 -14.78151 -14.35869 -14.18043 -13.97452 -13.71885 -13.45556 -13.17381 -13.04007 -12.81629 -12.79136 -12.52814 -12.43329 -12.06582 -12.02549 -11.87001 -11.76466 -11.40472 -11.22469 -11.20454 -10.97687 -10.94647 -10.57083 -10.15987 -9.01794 -7.92880 -5.23415 0.68254 1.44898 1.49021 1.51816 1.54098 1.62804 2.60006 2.66508 3.21990 3.33338 3.38846 3.47896 3.55105 3.77492 3.88057 3.92148 3.93196 4.03459 4.18945 4.21778 4.21870 4.29129 4.33892 4.49913 4.65043 4.71835 4.75237 4.82904 4.85648 4.88087 4.90310 4.99299 5.09984 5.14152 5.17125 5.21876 5.31372 5.48401 5.51468 5.71050 5.94946 6.26949 7.33465 7.55693 8.04410 8.31411 9.31468 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.052469 B = 0.002492 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.522487 B =11231.259209 C =11313.265830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.739 5.739 10 C 0.237 3.763 11 C -0.041 4.041 12 C -0.018 4.018 13 N -0.278 5.278 14 C 0.107 3.893 15 C 0.071 3.929 16 H 0.066 0.934 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.117 4.117 22 C 0.059 3.941 23 O -0.405 6.405 24 N -0.111 5.111 25 N -0.302 5.302 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.224 0.776 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -30.022 -10.502 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.102 0.898 9 N -0.381 5.381 10 C 0.109 3.891 11 C -0.180 4.180 12 C -0.170 4.170 13 N -0.071 5.071 14 C -0.013 4.013 15 C 0.012 3.988 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.117 4.117 19 C -0.173 4.173 20 C -0.172 4.172 21 C -0.154 4.154 22 C -0.017 4.017 23 O -0.325 6.325 24 N -0.091 5.091 25 N -0.169 5.169 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.926 -30.384 -9.190 32.123 hybrid contribution 0.343 1.296 -0.487 1.426 sum -4.583 -29.089 -9.677 30.997 Atomic orbital electron populations 1.69868 1.06906 1.26026 1.59655 1.25677 0.96446 1.01420 1.03634 0.84960 0.78321 0.79203 0.76569 1.18580 1.21729 1.22375 1.19751 0.91810 0.84787 1.41031 0.89778 1.42524 1.05474 1.00674 1.89455 1.18935 0.90353 0.80337 0.99450 1.22272 1.04158 1.01744 0.89786 1.23795 0.97013 0.93650 1.02576 1.47488 1.29405 1.24262 1.05963 1.22846 0.98176 0.84568 0.95678 1.23312 0.82644 0.92956 0.99844 0.91593 1.22929 0.98872 0.91171 1.02140 1.22484 0.94012 0.95313 0.99909 1.22877 1.00578 0.97482 0.96352 1.22895 0.98764 1.00270 0.95273 1.22705 1.00235 0.95510 0.96974 1.23142 0.97195 0.80676 1.00697 1.88559 1.26045 1.27641 1.90224 1.78051 1.20083 1.16611 0.94310 1.74990 1.08342 1.05556 1.28009 0.94051 0.79824 0.95532 0.92085 0.75944 0.84732 0.84098 0.87662 0.87382 0.89865 0.91566 0.89316 0.90721 0.89806 0.89229 0.89893 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 7 C -0.24 -14.06 9.99 84.04 0.84 -13.22 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.74 -40.53 5.59 -347.17 -1.94 -42.47 16 10 C 0.24 10.59 6.82 85.63 0.58 11.18 16 11 C -0.04 -1.68 6.62 41.60 0.28 -1.40 16 12 C -0.02 -0.58 11.50 83.49 0.96 0.38 16 13 N -0.28 -8.15 3.42 -347.73 -1.19 -9.34 16 14 C 0.11 1.80 6.16 86.38 0.53 2.33 16 15 C 0.07 1.22 3.52 31.35 0.11 1.33 16 16 H 0.07 1.44 8.04 -2.39 -0.02 1.42 16 17 C -0.11 -1.03 5.77 31.69 0.18 -0.85 16 18 C -0.12 -1.20 0.94 -52.23 -0.05 -1.25 16 19 C -0.14 -1.40 7.32 30.75 0.23 -1.17 16 20 C -0.13 -0.93 7.97 31.27 0.25 -0.68 16 21 C -0.12 -0.79 7.41 30.74 0.23 -0.56 16 22 C 0.06 0.90 7.31 72.01 0.53 1.43 16 23 O -0.40 -9.00 11.04 -148.98 -1.65 -10.65 16 24 N -0.11 -4.24 12.85 37.02 0.48 -3.76 16 25 N -0.30 -13.50 12.41 -48.59 -0.60 -14.10 16 26 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.37 22.15 7.66 -92.71 -0.71 21.44 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.22 5.12 8.06 -2.91 -0.02 5.10 16 31 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.14 1.53 8.07 -2.39 -0.02 1.51 16 33 H 0.10 0.70 8.06 -2.39 -0.02 0.68 16 34 H 0.11 0.58 8.04 -2.39 -0.02 0.56 16 35 H 0.08 0.88 8.02 -2.39 -0.02 0.87 16 36 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 42 H 0.06 1.00 7.87 -2.39 -0.02 0.99 16 Total: -1.00 -79.65 349.22 2.84 -76.81 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.30 Total: 22.84 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.13 Total: -6.78 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -2.98 Total: -131.59 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.65 Total: -10.65 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -79.65 2.84 -76.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881395093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.781 kcal (2) G-P(sol) polarization free energy of solvation -79.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds