Wall clock time and date at job start Tue Mar 31 2020 03:28:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42903 * 113.99841 * 2 1
4 4 C 1.52999 * 109.47213 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47101 * 180.02562 * 4 3 2
6 6 H 1.09000 * 109.47439 * 305.00432 * 5 4 3
7 7 N 1.46901 * 109.47228 * 65.00485 * 5 4 3
8 8 C 1.50708 * 109.47099 * 185.00595 * 5 4 3
9 9 O 1.21285 * 119.99664 * 260.00074 * 8 5 4
10 10 N 1.34771 * 120.00274 * 79.99730 * 8 5 4
11 11 C 1.46494 * 120.00136 * 180.02562 * 10 8 5
12 12 C 1.50701 * 109.47354 * 180.02562 * 11 10 8
13 13 C 1.38631 * 119.75182 * 269.72955 * 12 11 10
14 14 C 1.37613 * 120.25225 * 179.71719 * 13 12 11
15 15 C 1.40722 * 119.74188 * 0.57605 * 14 13 12
16 16 C 1.41395 * 120.24166 * 179.68313 * 15 14 13
17 17 H 1.08006 * 119.99460 * 204.40043 * 16 15 14
18 18 C 1.39943 * 120.00300 * 24.40149 * 16 15 14
19 19 N 1.30816 * 120.00179 * 17.84725 * 18 16 15
20 20 Si 1.86798 * 119.99814 * 197.84750 * 18 16 15
21 21 H 1.48501 * 109.47287 * 90.00065 * 20 18 16
22 22 H 1.48496 * 109.47313 * 209.99821 * 20 18 16
23 23 H 1.48500 * 109.47292 * 330.00307 * 20 18 16
24 24 C 1.40715 * 119.50838 * 359.69653 * 15 14 13
25 25 C 1.37610 * 119.74838 * 0.02562 * 24 15 14
26 26 H 1.08999 * 109.46796 * 299.99604 * 1 2 3
27 27 H 1.09003 * 109.47182 * 59.99855 * 1 2 3
28 28 H 1.08998 * 109.46538 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.46959 * 60.00406 * 3 2 1
30 30 H 1.08990 * 109.47630 * 300.00179 * 3 2 1
31 31 H 1.09005 * 109.46952 * 60.00749 * 4 3 2
32 32 H 1.09001 * 109.47761 * 300.00672 * 4 3 2
33 33 H 1.00899 * 110.99743 * 296.04448 * 7 5 4
34 34 H 1.00900 * 110.99962 * 59.99816 * 7 5 4
35 35 H 0.97004 * 119.99813 * 0.02562 * 10 8 5
36 36 H 1.09001 * 109.47439 * 299.99946 * 11 10 8
37 37 H 1.09003 * 109.47068 * 60.00376 * 11 10 8
38 38 H 1.08005 * 119.87493 * 359.97438 * 13 12 11
39 39 H 1.07997 * 120.13025 * 180.27394 * 14 13 12
40 40 H 0.97001 * 120.00506 * 179.97438 * 19 18 16
41 41 H 1.08005 * 120.12289 * 179.97438 * 24 15 14
42 42 H 1.08000 * 119.87841 * 179.97438 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 6 4.1577 2.5825 0.0013
6 1 3.7673 3.1544 -0.8405
7 7 3.8216 3.2675 1.2566
8 6 5.6552 2.4658 -0.1221
9 8 6.3543 2.5636 0.8642
10 7 6.2174 2.2527 -1.3282
11 6 7.6730 2.1387 -1.4480
12 6 8.0416 1.9047 -2.8904
13 6 8.1365 0.6092 -3.3747
14 6 8.4667 0.3838 -4.6915
15 6 8.7202 1.4742 -5.5442
16 6 9.0668 1.2545 -6.8973
17 1 9.6289 2.0012 -7.4387
18 6 8.6817 0.0698 -7.5349
19 7 7.7286 -0.6672 -7.0253
20 14 9.5285 -0.4591 -9.1136
21 1 10.7011 -1.3092 -8.7855
22 1 8.5763 -1.2313 -9.9515
23 1 9.9817 0.7428 -9.8589
24 6 8.6265 2.7846 -5.0401
25 6 8.2891 2.9865 -3.7214
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3632 -1.0277 -0.0005
29 1 1.6886 1.8464 0.8901
30 1 1.6886 1.8464 -0.8899
31 1 3.8575 0.6438 -0.8892
32 1 3.8568 0.6439 0.8908
33 1 2.8265 3.4156 1.3325
34 1 4.1730 2.7566 2.0526
35 1 5.6583 2.1748 -2.1170
36 1 8.1396 3.0599 -1.0990
37 1 8.0230 1.3023 -0.8429
38 1 7.9465 -0.2262 -2.7171
39 1 8.5357 -0.6261 -5.0678
40 1 7.4613 -1.4882 -7.4674
41 1 8.8194 3.6287 -5.6857
42 1 8.2170 3.9913 -3.3322
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000884371882.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:09
Heat of formation + Delta-G solvation = -78.680964 kcal
Electronic energy + Delta-G solvation = -22420.050551 eV
Core-core repulsion = 18978.056816 eV
Total energy + Delta-G solvation = -3441.993734 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.75803 -38.27239 -37.68794 -35.54097 -34.67918 -33.42835 -30.55691 -30.32892
-29.37364 -27.66628 -26.71879 -25.41252 -23.54391 -22.01319 -21.08705 -20.14476
-19.90863 -17.75107 -17.39955 -16.61262 -16.39227 -15.91664 -15.47863 -15.36123
-14.98561 -14.71874 -14.32653 -14.04298 -13.82737 -13.65984 -13.36395 -13.06362
-12.54529 -12.43568 -12.09264 -12.04585 -11.84228 -11.69339 -11.51401 -11.39200
-11.18080 -11.05558 -10.72368 -10.46693 -10.01259 -9.80776 -9.62062 -9.48620
-9.24161 -8.90940 -8.63956 -7.58286 -7.45961 -6.88058 -4.47564 2.55659
2.77772 2.97289 3.00508 3.04246 3.04923 3.40303 3.68130 3.84750
4.45318 4.50805 4.61398 4.67934 4.85744 4.98350 5.01372 5.04517
5.14035 5.20372 5.35418 5.58985 5.66930 5.79184 5.82828 5.91194
6.23225 6.29604 6.34001 6.79197 6.81579 6.85409 6.85974 6.96741
7.17512 7.23155 7.25668 7.50292 7.69122 7.92573 7.94827 8.00924
8.18475 8.50838 8.53355 8.77858 8.85627 10.05919
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.016432 B = 0.003115 C = 0.002716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1703.574885 B = 8987.312341 C =10306.440178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.389 6.389
3 C 0.063 3.937
4 C -0.151 4.151
5 C 0.078 3.922
6 H 0.103 0.897
7 N -0.827 5.827
8 C 0.516 3.484
9 O -0.542 6.542
10 N -0.716 5.716
11 C 0.185 3.815
12 C -0.245 4.245
13 C -0.081 4.081
14 C -0.169 4.169
15 C 0.116 3.884
16 C -0.458 4.458
17 H 0.079 0.921
18 C 0.076 3.924
19 N -0.787 5.787
20 Si 0.909 3.091
21 H -0.267 1.267
22 H -0.277 1.277
23 H -0.262 1.262
24 C -0.230 4.230
25 C -0.070 4.070
26 H 0.040 0.960
27 H 0.043 0.957
28 H 0.086 0.914
29 H 0.047 0.953
30 H 0.054 0.946
31 H 0.086 0.914
32 H 0.078 0.922
33 H 0.342 0.658
34 H 0.352 0.648
35 H 0.401 0.599
36 H 0.058 0.942
37 H 0.058 0.942
38 H 0.088 0.912
39 H 0.118 0.882
40 H 0.282 0.718
41 H 0.093 0.907
42 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.938 1.456 8.928 14.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.308 6.308
3 C -0.014 4.014
4 C -0.191 4.191
5 C -0.037 4.037
6 H 0.121 0.879
7 N -0.359 5.359
8 C 0.300 3.700
9 O -0.419 6.419
10 N -0.367 5.367
11 C 0.063 3.937
12 C -0.247 4.247
13 C -0.100 4.100
14 C -0.188 4.188
15 C 0.114 3.886
16 C -0.487 4.487
17 H 0.097 0.903
18 C -0.143 4.143
19 N -0.412 5.412
20 Si 0.734 3.266
21 H -0.192 1.192
22 H -0.202 1.202
23 H -0.185 1.185
24 C -0.249 4.249
25 C -0.089 4.089
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.105 0.895
29 H 0.065 0.935
30 H 0.073 0.927
31 H 0.105 0.895
32 H 0.096 0.904
33 H 0.156 0.844
34 H 0.167 0.833
35 H 0.235 0.765
36 H 0.076 0.924
37 H 0.076 0.924
38 H 0.106 0.894
39 H 0.136 0.864
40 H 0.093 0.907
41 H 0.111 0.889
42 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -10.995 1.756 9.316 14.517
hybrid contribution -0.825 -1.007 -1.015 1.651
sum -11.820 0.749 8.301 14.463
Atomic orbital electron populations
1.22761 0.80861 1.02936 0.99993 1.87909 1.19831 1.27683 1.95397
1.22510 0.93591 0.85044 1.00238 1.22269 0.93805 0.97947 1.05125
1.21319 0.93460 0.93403 0.95523 0.87870 1.58531 1.19303 1.54586
1.03509 1.20264 0.89416 0.76616 0.83692 1.90659 1.63848 1.50187
1.37252 1.46509 1.09290 1.71995 1.08864 1.19950 0.78488 1.00385
0.94849 1.18984 1.17911 0.93831 0.93957 1.20561 0.99485 0.94444
0.95552 1.21312 1.06152 0.99495 0.91866 1.17676 0.87271 0.90756
0.92946 1.19671 1.30770 1.02131 0.96154 0.90258 1.25945 0.93246
0.95616 0.99489 1.69812 1.20637 1.12301 1.38455 0.86287 0.79945
0.79574 0.80820 1.19168 1.20240 1.18542 1.20976 1.12426 0.96314
0.95215 1.20411 0.98650 0.95977 0.93821 0.94115 0.93884 0.89503
0.93483 0.92730 0.89532 0.90361 0.84373 0.83287 0.76492 0.92378
0.92409 0.89412 0.86376 0.90696 0.88899 0.89353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 11.01 101.05 1.11 1.34 16
2 O -0.39 -4.21 10.70 -35.23 -0.38 -4.58 16
3 C 0.06 0.56 5.71 37.16 0.21 0.77 16
4 C -0.15 -1.59 5.21 -26.73 -0.14 -1.73 16
5 C 0.08 0.88 3.21 -68.86 -0.22 0.66 16
6 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16
7 N -0.83 -8.70 8.94 -5.65 -0.05 -8.75 16
8 C 0.52 7.97 7.08 -10.98 -0.08 7.89 16
9 O -0.54 -10.29 16.25 5.55 0.09 -10.20 16
10 N -0.72 -11.24 5.55 -61.47 -0.34 -11.58 16
11 C 0.18 3.33 5.79 -5.20 -0.03 3.30 16
12 C -0.25 -5.02 5.27 -104.33 -0.55 -5.57 16
13 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16
14 C -0.17 -4.19 8.70 -38.87 -0.34 -4.52 16
15 C 0.12 2.97 5.58 -106.82 -0.60 2.37 16
16 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16
17 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16
18 C 0.08 1.83 5.14 -17.35 -0.09 1.74 16
19 N -0.79 -19.50 10.95 55.55 0.61 -18.90 16
20 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16
21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16
22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16
23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16
24 C -0.23 -5.38 9.80 -38.88 -0.38 -5.77 16
25 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16
26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16
27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.05 0.34 6.87 -51.93 -0.36 -0.02 16
30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.34 2.62 7.55 -39.29 -0.30 2.32 16
34 H 0.35 3.87 8.58 -39.29 -0.34 3.53 16
35 H 0.40 5.82 8.46 -40.82 -0.35 5.48 16
36 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16
37 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16
38 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16
39 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16
40 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16
41 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16
42 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16
LS Contribution 355.32 15.07 5.35 5.35
Total: -1.00 -29.00 355.32 -8.23 -37.23
By element:
Atomic # 1 Polarization: 20.32 SS G_CDS: -6.28 Total: 14.05 kcal
Atomic # 6 Polarization: -13.38 SS G_CDS: -2.21 Total: -15.58 kcal
Atomic # 7 Polarization: -39.44 SS G_CDS: 0.22 Total: -39.23 kcal
Atomic # 8 Polarization: -14.50 SS G_CDS: -0.29 Total: -14.79 kcal
Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -29.00 -8.23 -37.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884371882.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.449 kcal
(2) G-P(sol) polarization free energy of solvation -29.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.681 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds