Wall clock time and date at job start Tue Mar 31 2020 03:28:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42903 * 113.99841 * 2 1
4 4 C 1.52999 * 109.47213 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47101 * 180.02562 * 4 3 2
6 6 H 1.09000 * 109.47439 * 305.00432 * 5 4 3
7 7 N 1.46901 * 109.47228 * 65.00485 * 5 4 3
8 8 C 1.50708 * 109.47099 * 185.00595 * 5 4 3
9 9 O 1.21285 * 119.99664 * 260.00074 * 8 5 4
10 10 N 1.34771 * 120.00274 * 79.99730 * 8 5 4
11 11 C 1.46494 * 120.00136 * 180.02562 * 10 8 5
12 12 C 1.50701 * 109.47354 * 180.02562 * 11 10 8
13 13 C 1.38631 * 119.75182 * 269.72955 * 12 11 10
14 14 C 1.37613 * 120.25225 * 179.71719 * 13 12 11
15 15 C 1.40722 * 119.74188 * 0.57605 * 14 13 12
16 16 C 1.41395 * 120.24166 * 179.68313 * 15 14 13
17 17 H 1.08006 * 119.99460 * 204.40043 * 16 15 14
18 18 C 1.39943 * 120.00300 * 24.40149 * 16 15 14
19 19 N 1.30816 * 120.00179 * 17.84725 * 18 16 15
20 20 Si 1.86798 * 119.99814 * 197.84750 * 18 16 15
21 21 H 1.48501 * 109.47287 * 90.00065 * 20 18 16
22 22 H 1.48496 * 109.47313 * 209.99821 * 20 18 16
23 23 H 1.48500 * 109.47292 * 330.00307 * 20 18 16
24 24 C 1.40715 * 119.50838 * 359.69653 * 15 14 13
25 25 C 1.37610 * 119.74838 * 0.02562 * 24 15 14
26 26 H 1.08999 * 109.46796 * 299.99604 * 1 2 3
27 27 H 1.09003 * 109.47182 * 59.99855 * 1 2 3
28 28 H 1.08998 * 109.46538 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.46959 * 60.00406 * 3 2 1
30 30 H 1.08990 * 109.47630 * 300.00179 * 3 2 1
31 31 H 1.09005 * 109.46952 * 60.00749 * 4 3 2
32 32 H 1.09001 * 109.47761 * 300.00672 * 4 3 2
33 33 H 1.00899 * 110.99743 * 296.04448 * 7 5 4
34 34 H 1.00900 * 110.99962 * 59.99816 * 7 5 4
35 35 H 0.97004 * 119.99813 * 0.02562 * 10 8 5
36 36 H 1.09001 * 109.47439 * 299.99946 * 11 10 8
37 37 H 1.09003 * 109.47068 * 60.00376 * 11 10 8
38 38 H 1.08005 * 119.87493 * 359.97438 * 13 12 11
39 39 H 1.07997 * 120.13025 * 180.27394 * 14 13 12
40 40 H 0.97001 * 120.00506 * 179.97438 * 19 18 16
41 41 H 1.08005 * 120.12289 * 179.97438 * 24 15 14
42 42 H 1.08000 * 119.87841 * 179.97438 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 6 4.1577 2.5825 0.0013
6 1 3.7673 3.1544 -0.8405
7 7 3.8216 3.2675 1.2566
8 6 5.6552 2.4658 -0.1221
9 8 6.3543 2.5636 0.8642
10 7 6.2174 2.2527 -1.3282
11 6 7.6730 2.1387 -1.4480
12 6 8.0416 1.9047 -2.8904
13 6 8.1365 0.6092 -3.3747
14 6 8.4667 0.3838 -4.6915
15 6 8.7202 1.4742 -5.5442
16 6 9.0668 1.2545 -6.8973
17 1 9.6289 2.0012 -7.4387
18 6 8.6817 0.0698 -7.5349
19 7 7.7286 -0.6672 -7.0253
20 14 9.5285 -0.4591 -9.1136
21 1 10.7011 -1.3092 -8.7855
22 1 8.5763 -1.2313 -9.9515
23 1 9.9817 0.7428 -9.8589
24 6 8.6265 2.7846 -5.0401
25 6 8.2891 2.9865 -3.7214
26 1 -0.3633 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3632 -1.0277 -0.0005
29 1 1.6886 1.8464 0.8901
30 1 1.6886 1.8464 -0.8899
31 1 3.8575 0.6438 -0.8892
32 1 3.8568 0.6439 0.8908
33 1 2.8265 3.4156 1.3325
34 1 4.1730 2.7566 2.0526
35 1 5.6583 2.1748 -2.1170
36 1 8.1396 3.0599 -1.0990
37 1 8.0230 1.3023 -0.8429
38 1 7.9465 -0.2262 -2.7171
39 1 8.5357 -0.6261 -5.0678
40 1 7.4613 -1.4882 -7.4674
41 1 8.8194 3.6287 -5.6857
42 1 8.2170 3.9913 -3.3322
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000884371882.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:08
Heat of formation + Delta-G solvation = -99.063213 kcal
Electronic energy + Delta-G solvation = -22420.934391 eV
Core-core repulsion = 18978.056816 eV
Total energy + Delta-G solvation = -3442.877575 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.157 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.98234 -39.51011 -38.95259 -36.58556 -36.16711 -35.06805 -32.12963 -31.23341
-31.16414 -29.04098 -27.65050 -26.49840 -25.01454 -22.97314 -22.89081 -21.81470
-21.13144 -19.23925 -18.80726 -17.42120 -17.32478 -17.08399 -16.92472 -16.53145
-16.11258 -15.78235 -15.75810 -15.39460 -15.26892 -15.02223 -14.39069 -14.27692
-14.13149 -13.83195 -13.57954 -13.45611 -13.04429 -12.82121 -12.81468 -12.72547
-12.48085 -12.25971 -12.11895 -12.09620 -11.51385 -11.29023 -11.09069 -10.86439
-10.66157 -10.02783 -9.76159 -9.39706 -9.27864 -8.67022 -6.36909 0.84290
1.13621 1.38822 1.48231 1.51427 1.59976 2.19358 2.26146 2.72410
2.85005 3.62408 3.67480 3.77143 3.88968 4.02879 4.14584 4.23193
4.28550 4.31741 4.42850 4.51336 4.51784 4.54017 4.66160 4.80757
4.84883 4.88517 4.97459 5.04608 5.14487 5.35103 5.42510 5.49234
5.68369 5.90842 6.00780 6.08597 6.18433 6.20198 6.35969 6.51104
6.64020 6.67788 6.91780 7.00512 7.26688 8.29360
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.016432 B = 0.003115 C = 0.002716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1703.574885 B = 8987.312341 C =10306.440178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.420 6.420
3 C 0.064 3.936
4 C -0.144 4.144
5 C 0.092 3.908
6 H 0.125 0.875
7 N -0.832 5.832
8 C 0.513 3.487
9 O -0.578 6.578
10 N -0.712 5.712
11 C 0.193 3.807
12 C -0.226 4.226
13 C -0.083 4.083
14 C -0.191 4.191
15 C 0.086 3.914
16 C -0.496 4.496
17 H 0.076 0.924
18 C 0.037 3.963
19 N -0.818 5.818
20 Si 0.980 3.020
21 H -0.264 1.264
22 H -0.267 1.267
23 H -0.259 1.259
24 C -0.243 4.243
25 C -0.068 4.068
26 H 0.055 0.945
27 H 0.051 0.949
28 H 0.092 0.908
29 H 0.067 0.933
30 H 0.067 0.933
31 H 0.074 0.926
32 H 0.065 0.935
33 H 0.360 0.640
34 H 0.350 0.650
35 H 0.408 0.592
36 H 0.060 0.940
37 H 0.055 0.945
38 H 0.103 0.897
39 H 0.101 0.899
40 H 0.289 0.711
41 H 0.098 0.902
42 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.251 2.126 9.374 16.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.340 6.340
3 C -0.013 4.013
4 C -0.184 4.184
5 C -0.024 4.024
6 H 0.142 0.858
7 N -0.366 5.366
8 C 0.300 3.700
9 O -0.458 6.458
10 N -0.363 5.363
11 C 0.070 3.930
12 C -0.228 4.228
13 C -0.102 4.102
14 C -0.211 4.211
15 C 0.083 3.917
16 C -0.525 4.525
17 H 0.094 0.906
18 C -0.179 4.179
19 N -0.444 5.444
20 Si 0.801 3.199
21 H -0.188 1.188
22 H -0.192 1.192
23 H -0.182 1.182
24 C -0.263 4.263
25 C -0.086 4.086
26 H 0.073 0.927
27 H 0.070 0.930
28 H 0.111 0.889
29 H 0.085 0.915
30 H 0.086 0.914
31 H 0.093 0.907
32 H 0.084 0.916
33 H 0.177 0.823
34 H 0.164 0.836
35 H 0.244 0.756
36 H 0.079 0.921
37 H 0.073 0.927
38 H 0.121 0.879
39 H 0.119 0.881
40 H 0.100 0.900
41 H 0.116 0.884
42 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -12.349 2.439 9.764 15.931
hybrid contribution -0.472 -1.165 -0.987 1.598
sum -12.821 1.274 8.777 15.590
Atomic orbital electron populations
1.22938 0.79241 1.03794 1.01126 1.87859 1.21715 1.28772 1.95656
1.22538 0.92093 0.84807 1.01815 1.22165 0.95297 0.97023 1.03953
1.21197 0.90179 0.94275 0.96730 0.85769 1.58515 1.20825 1.54310
1.02982 1.20974 0.91161 0.75217 0.82670 1.90645 1.65148 1.51709
1.38287 1.46326 1.08320 1.72037 1.09623 1.19737 0.80053 1.00429
0.92744 1.19189 1.15622 0.92974 0.95023 1.20748 0.98773 0.95830
0.94805 1.21258 1.08072 0.98674 0.93070 1.18005 0.88297 0.91830
0.93529 1.19894 1.32403 1.03488 0.96750 0.90580 1.26735 0.93377
0.95098 1.02674 1.69856 1.21582 1.12849 1.40077 0.85222 0.78809
0.79109 0.76724 1.18849 1.19182 1.18227 1.21165 1.12844 0.95810
0.96451 1.20680 0.97456 0.97513 0.92988 0.92656 0.93023 0.88946
0.91531 0.91435 0.90711 0.91587 0.82332 0.83596 0.75605 0.92140
0.92666 0.87879 0.88149 0.90022 0.88354 0.86626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.32 11.01 113.37 1.25 1.57 16
2 O -0.42 -8.38 10.70 -148.98 -1.59 -9.97 16
3 C 0.06 0.98 5.71 71.98 0.41 1.40 16
4 C -0.14 -2.78 5.21 30.59 0.16 -2.62 16
5 C 0.09 1.85 3.21 44.17 0.14 1.99 16
6 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16
7 N -0.83 -15.54 8.94 -171.79 -1.54 -17.08 16
8 C 0.51 15.02 7.08 87.66 0.62 15.64 16
9 O -0.58 -21.29 16.25 -3.04 -0.05 -21.34 16
10 N -0.71 -21.11 5.55 -466.79 -2.59 -23.70 16
11 C 0.19 6.64 5.79 85.63 0.50 7.14 16
12 C -0.23 -9.01 5.27 -19.67 -0.10 -9.11 16
13 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16
14 C -0.19 -9.72 8.70 22.73 0.20 -9.52 16
15 C 0.09 4.49 5.58 -21.29 -0.12 4.37 16
16 C -0.50 -26.07 9.05 23.46 0.21 -25.86 16
17 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16
18 C 0.04 1.81 5.14 85.26 0.44 2.25 16
19 N -0.82 -41.46 10.95 21.83 0.24 -41.22 16
20 Si 0.98 37.20 29.59 68.60 2.03 39.23 16
21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16
22 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16
23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16
24 C -0.24 -11.44 9.80 22.73 0.22 -11.22 16
25 C -0.07 -2.79 9.67 22.22 0.21 -2.57 16
26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16
27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
29 H 0.07 0.75 6.87 -2.38 -0.02 0.74 16
30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16
32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.36 4.42 7.55 -89.69 -0.68 3.74 16
34 H 0.35 7.07 8.58 -89.69 -0.77 6.30 16
35 H 0.41 11.07 8.46 -92.71 -0.78 10.29 16
36 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16
37 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16
38 H 0.10 4.15 8.06 -2.91 -0.02 4.12 16
39 H 0.10 5.39 6.16 -2.91 -0.02 5.37 16
40 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16
41 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16
42 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16
Total: -1.00 -63.32 355.32 -0.33 -63.65
By element:
Atomic # 1 Polarization: 41.59 SS G_CDS: -1.18 Total: 40.41 kcal
Atomic # 6 Polarization: -34.33 SS G_CDS: 4.35 Total: -29.97 kcal
Atomic # 7 Polarization: -78.11 SS G_CDS: -3.89 Total: -82.00 kcal
Atomic # 8 Polarization: -29.67 SS G_CDS: -1.64 Total: -31.32 kcal
Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal
Total: -63.32 -0.33 -63.65 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884371882.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.417 kcal
(2) G-P(sol) polarization free energy of solvation -63.319 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds