Wall clock time and date at job start Tue Mar 31 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99754 * 2 1 4 4 C 1.38213 * 119.99938 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99941 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00014 * 359.75190 * 5 4 3 7 7 C 1.38208 * 120.00062 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.00173 * 0.02562 * 7 2 1 9 9 H 1.09006 * 109.46865 * 39.99732 * 8 7 2 10 10 C 1.53000 * 109.47366 * 280.00135 * 8 7 2 11 11 O 1.42893 * 109.46869 * 303.75446 * 10 8 7 12 12 N 1.46894 * 109.47249 * 160.00072 * 8 7 2 13 13 C 1.46905 * 110.99872 * 297.87531 * 12 8 7 14 14 C 1.46903 * 111.00052 * 173.92664 * 12 8 7 15 15 C 1.50707 * 109.46946 * 192.89649 * 14 12 8 16 16 O 1.21290 * 119.99950 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99494 * 179.97438 * 15 14 12 18 18 C 1.37099 * 119.99704 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99940 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99883 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00374 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46834 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47130 * 119.99857 * 22 20 18 25 25 H 1.48493 * 109.47303 * 240.00004 * 22 20 18 26 26 H 1.08994 * 109.47352 * 270.02347 * 1 2 3 27 27 H 1.09001 * 109.46816 * 30.02325 * 1 2 3 28 28 H 1.09000 * 109.46979 * 150.02140 * 1 2 3 29 29 H 1.08000 * 120.00464 * 359.97438 * 3 2 1 30 30 H 1.07994 * 120.00340 * 180.02562 * 4 3 2 31 31 H 1.08003 * 120.00021 * 180.02562 * 5 4 3 32 32 H 1.07995 * 120.00325 * 180.27331 * 6 5 4 33 33 H 1.08998 * 109.46994 * 63.75111 * 10 8 7 34 34 H 1.09000 * 109.47391 * 183.74897 * 10 8 7 35 35 H 0.96707 * 113.99587 * 180.02562 * 11 10 8 36 36 H 1.09002 * 109.47162 * 296.04739 * 13 12 8 37 37 H 1.08999 * 109.46830 * 56.04936 * 13 12 8 38 38 H 1.09004 * 109.47029 * 176.04802 * 13 12 8 39 39 H 1.08994 * 109.47183 * 72.89423 * 14 12 8 40 40 H 1.08995 * 109.47089 * 312.89194 * 14 12 8 41 41 H 0.97003 * 120.00342 * 359.97438 * 17 15 14 42 42 H 0.97001 * 119.99627 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0073 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0005 9 1 0.5814 -2.4232 -0.6604 10 6 0.9721 -2.8182 1.4210 11 8 2.0955 -2.8352 2.3039 12 7 2.3271 -3.5769 -0.4725 13 6 2.7609 -3.3319 -1.8545 14 6 1.6734 -4.8868 -0.3504 15 6 2.6959 -5.9779 -0.5381 16 8 3.8550 -5.6923 -0.7529 17 7 2.3223 -7.2709 -0.4672 18 6 3.2526 -8.2635 -0.6374 19 1 4.2846 -8.0093 -0.8287 20 6 2.8675 -9.5965 -0.5638 21 7 1.6119 -9.9058 -0.3305 22 14 4.1349 -10.9490 -0.7964 23 1 5.4673 -10.3415 -1.0437 24 1 4.1935 -11.7882 0.4274 25 1 3.7516 -11.7923 -1.9570 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3518 0.0001 0.0024 32 1 4.1207 -2.1322 0.0126 33 1 0.2653 -2.0552 1.7470 34 1 0.4854 -3.7934 1.4334 35 1 1.8698 -3.0301 3.2238 36 1 1.8951 -3.3536 -2.5164 37 1 3.2416 -2.3556 -1.9167 38 1 3.4680 -4.1048 -2.1558 39 1 0.8995 -4.9791 -1.1124 40 1 1.2229 -4.9772 0.6379 41 1 1.3954 -7.4992 -0.2950 42 1 1.3431 -10.8365 -0.2795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886433581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:21 Heat of formation + Delta-G solvation = -41.578097 kcal Electronic energy + Delta-G solvation = -23834.105619 eV Core-core repulsion = 20393.720786 eV Total energy + Delta-G solvation = -3440.384833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06966 -38.37889 -37.07601 -35.51332 -33.82141 -33.00128 -31.35818 -31.08999 -28.83440 -27.78971 -26.78222 -24.77136 -23.89540 -22.67805 -21.29392 -19.81711 -19.05526 -17.84275 -17.37010 -16.66032 -16.16712 -15.49295 -15.14654 -14.75335 -14.56766 -14.47173 -14.16523 -13.72767 -13.62222 -13.45543 -13.12418 -12.99659 -12.69683 -12.49552 -12.30221 -12.11688 -11.86598 -11.50459 -11.46997 -11.24720 -11.13356 -10.93989 -10.72470 -10.53087 -10.31490 -10.18750 -9.75060 -9.44750 -8.55251 -8.48644 -8.37254 -7.92417 -7.76599 -6.37970 -3.78239 1.46136 1.58514 3.18831 3.29029 3.36498 3.86563 3.95318 3.97635 4.25477 4.38085 4.75398 4.88173 4.97503 5.07287 5.20775 5.23528 5.26255 5.26709 5.35729 5.40818 5.50669 5.56943 5.66508 5.75818 5.76742 5.85025 5.93444 5.98375 6.04208 6.16284 6.28918 6.34156 6.55639 6.59369 6.73337 6.83593 7.18869 7.34836 7.44105 7.59251 7.81784 8.11429 8.67015 9.23028 9.59610 10.12180 10.80145 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.003526 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.247472 B = 7938.828422 C = 8302.489984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.134 4.134 6 C -0.072 4.072 7 C -0.064 4.064 8 C 0.121 3.879 9 H 0.060 0.940 10 C 0.083 3.917 11 O -0.546 6.546 12 N -0.500 5.500 13 C 0.018 3.982 14 C 0.040 3.960 15 C 0.449 3.551 16 O -0.574 6.574 17 N -0.568 5.568 18 C -0.295 4.295 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.904 5.904 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.371 0.629 36 H 0.013 0.987 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.391 0.609 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 18.724 2.242 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.090 4.090 7 C -0.064 4.064 8 C 0.012 3.988 9 H 0.077 0.923 10 C 0.004 3.996 11 O -0.349 6.349 12 N -0.224 5.224 13 C -0.129 4.129 14 C -0.091 4.091 15 C 0.235 3.765 16 O -0.457 6.457 17 N -0.205 5.205 18 C -0.425 4.425 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.546 5.546 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.216 0.784 36 H 0.031 0.969 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.224 0.776 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.982 18.859 1.841 19.362 hybrid contribution -1.134 -0.996 0.042 1.510 sum -5.116 17.862 1.883 18.676 Atomic orbital electron populations 1.20851 0.91840 1.02579 1.02042 1.19658 0.95583 0.92746 1.01064 1.20829 0.94233 0.96883 1.02861 1.21060 0.94253 0.97854 1.00926 1.21199 0.99833 0.92618 1.01591 1.21292 0.93790 0.98752 0.95133 1.19392 0.94121 0.92560 1.00363 1.20659 0.93671 0.89830 0.94594 0.92299 1.22259 0.88373 0.99335 0.89592 1.86689 1.32811 1.94365 1.21055 1.61472 1.38718 0.99597 1.22640 1.22637 0.99997 1.03369 0.86918 1.21993 0.95690 0.89553 1.01838 1.19688 0.89367 0.83258 0.84222 1.90492 1.19365 1.82392 1.53461 1.41860 1.11415 1.04073 1.63171 1.19741 0.92606 0.84840 1.45281 0.87905 1.25236 0.96882 0.98399 0.97524 1.69620 1.15726 1.19329 1.49932 0.85819 0.80562 0.80338 0.77740 1.19232 1.20808 1.20846 0.91365 0.91784 0.91550 0.86690 0.86720 0.86419 0.83949 0.93608 0.92923 0.78377 0.96865 0.91554 0.88830 0.93654 0.89055 0.77631 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.92 36.01 0.32 -0.75 16 2 C -0.09 -1.08 5.88 -104.62 -0.61 -1.70 16 3 C -0.13 -1.47 9.70 -39.58 -0.38 -1.85 16 4 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 6 C -0.07 -1.08 7.53 -39.58 -0.30 -1.38 16 7 C -0.06 -0.89 3.98 -104.62 -0.42 -1.31 16 8 C 0.12 1.69 1.52 -68.87 -0.10 1.58 16 9 H 0.06 0.75 6.41 -51.93 -0.33 0.41 16 10 C 0.08 1.03 6.22 37.16 0.23 1.26 16 11 O -0.55 -7.70 13.07 -35.23 -0.46 -8.16 16 12 N -0.50 -8.62 3.26 -237.72 -0.77 -9.39 16 13 C 0.02 0.31 8.50 60.07 0.51 0.82 16 14 C 0.04 0.73 5.22 -4.97 -0.03 0.71 16 15 C 0.45 10.73 7.52 -10.98 -0.08 10.65 16 16 O -0.57 -15.63 14.13 5.55 0.08 -15.55 16 17 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.59 6.12 -51.93 -0.32 0.28 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 2.51 6.74 -52.49 -0.35 2.16 16 33 H 0.05 0.46 7.11 -51.93 -0.37 0.09 16 34 H 0.05 0.63 5.84 -51.93 -0.30 0.33 16 35 H 0.37 3.55 9.12 45.56 0.42 3.97 16 36 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 37 H 0.07 1.05 5.65 -51.93 -0.29 0.76 16 38 H 0.09 1.88 6.14 -51.93 -0.32 1.56 16 39 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.09 1.52 5.44 -51.93 -0.28 1.24 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -32.86 338.13 -7.24 -40.10 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -4.92 Total: 14.16 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.90 Total: -3.91 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.11 Total: -47.95 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.38 Total: -23.71 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.86 -7.24 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886433581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.480 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds