Wall clock time and date at job start Tue Mar 31 2020 03:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99808 * 2 1 4 4 H 1.48497 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47346 * 299.99872 * 3 2 1 6 6 H 1.48496 * 109.47226 * 60.00082 * 3 2 1 7 7 C 1.38811 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99896 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47052 * 180.02562 * 10 9 7 12 12 C 1.35350 * 126.75487 * 95.01686 * 11 10 9 13 13 N 1.35307 * 106.17738 * 179.97438 * 12 11 10 14 14 C 1.46504 * 125.86774 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46993 * 125.00108 * 14 13 12 16 16 H 1.09004 * 109.82054 * 305.69918 * 15 14 13 17 17 C 1.54379 * 109.83025 * 184.81533 * 15 14 13 18 18 C 1.55445 * 102.18690 * 219.18222 * 17 15 14 19 19 C 1.54944 * 100.98891 * 34.03732 * 18 17 15 20 20 H 1.09001 * 110.30908 * 82.52052 * 19 18 17 21 21 C 1.53004 * 110.39574 * 204.64520 * 19 18 17 22 22 C 1.52995 * 117.50248 * 245.96226 * 21 19 18 23 23 C 1.53001 * 117.50038 * 177.29898 * 21 19 18 24 24 O 1.43236 * 109.83151 * 66.58674 * 15 14 13 25 25 N 1.28719 * 108.26459 * 0.02562 * 13 12 11 26 26 N 1.28634 * 110.17554 * 359.97438 * 25 13 12 27 27 H 0.96991 * 120.00041 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00482 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47089 * 60.00848 * 10 9 7 30 30 H 1.08994 * 109.47639 * 300.00385 * 10 9 7 31 31 H 1.08002 * 126.90855 * 359.92434 * 12 11 10 32 32 H 1.08997 * 109.47010 * 245.00154 * 14 13 12 33 33 H 1.08996 * 109.46830 * 5.00379 * 14 13 12 34 34 H 1.09003 * 110.84438 * 337.32024 * 17 15 14 35 35 H 1.09006 * 110.84653 * 100.93844 * 17 15 14 36 36 H 1.09007 * 111.05615 * 276.12435 * 18 17 15 37 37 H 1.08995 * 111.18437 * 152.01006 * 18 17 15 38 38 H 1.09003 * 115.54652 * 31.63611 * 21 19 18 39 39 H 1.09000 * 117.49547 * 0.02562 * 22 21 19 40 40 H 1.09002 * 117.49395 * 145.01531 * 22 21 19 41 41 H 1.08992 * 117.50148 * 214.98217 * 23 21 19 42 42 H 1.09002 * 117.49461 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0790 -4.8023 -0.0012 12 6 0.6252 -5.4793 -1.0818 13 7 -0.2293 -6.4156 -0.6085 14 6 -0.9680 -7.3899 -1.4156 15 6 -0.6732 -8.8022 -0.9062 16 1 0.4035 -8.9711 -0.8873 17 6 -1.3503 -9.8422 -1.8245 18 6 -1.8560 -10.9007 -0.8046 19 6 -2.2127 -9.9994 0.4042 20 1 -3.2043 -9.5659 0.2732 21 6 -2.1530 -10.8031 1.7047 22 6 -3.4650 -11.0223 2.4607 23 6 -2.4165 -10.0527 3.0117 24 8 -1.2141 -8.9669 0.4099 25 7 -0.2817 -6.3032 0.6727 26 7 0.4874 -5.3501 1.0662 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6847 -3.7146 0.8895 30 1 2.6849 -3.7146 -0.8904 31 1 0.8910 -5.3063 -2.1142 32 1 -2.0368 -7.1910 -1.3371 33 1 -0.6586 -7.3076 -2.4575 34 1 -2.1845 -9.3964 -2.3663 35 1 -0.6281 -10.2797 -2.5138 36 1 -1.0658 -11.6066 -0.5485 37 1 -2.7371 -11.4206 -1.1806 38 1 -1.4191 -11.6088 1.7261 39 1 -4.3708 -10.5942 2.0313 40 1 -3.5941 -11.9721 2.9796 41 1 -1.8563 -10.3650 3.8930 42 1 -2.6319 -8.9863 2.9451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887467478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:02 Heat of formation + Delta-G solvation = 93.834654 kcal Electronic energy + Delta-G solvation = -22827.690174 eV Core-core repulsion = 19425.470029 eV Total energy + Delta-G solvation = -3402.220145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77407 -40.12039 -37.10212 -35.11715 -34.11981 -32.51768 -31.72582 -30.45945 -29.69438 -26.74970 -25.65905 -23.19454 -22.77056 -22.61286 -21.86461 -21.39777 -20.71187 -20.13037 -17.38953 -17.08089 -16.97417 -16.64780 -16.01511 -14.99561 -14.80746 -14.58861 -14.45937 -14.11524 -13.81088 -13.59794 -13.11821 -12.83684 -12.64080 -12.49623 -12.13788 -12.01912 -11.77565 -11.67447 -11.58080 -11.34142 -11.06475 -10.80787 -10.75849 -10.55894 -10.31222 -10.27895 -10.03857 -9.95648 -9.72099 -9.48765 -8.82646 -8.67019 -6.84928 -5.68357 -2.97525 2.02032 2.55588 3.08374 3.17889 3.49087 3.54516 3.57051 3.83841 3.98796 4.11767 4.19124 4.42394 4.58798 4.65636 4.68339 4.75030 4.79524 4.88434 4.93572 5.01844 5.09393 5.20599 5.27672 5.38291 5.40144 5.41914 5.56037 5.59137 5.67819 5.73987 5.76459 5.87607 6.00729 6.03058 6.25828 6.53489 6.77736 6.78255 6.87489 6.97262 7.76897 8.49110 9.06007 9.60740 10.17711 10.53857 11.54625 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.002746 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.783385 B =10195.244097 C =10670.139379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.007 4.007 12 C -0.055 4.055 13 N -0.298 5.298 14 C 0.108 3.892 15 C 0.070 3.930 16 H 0.087 0.913 17 C -0.149 4.149 18 C -0.146 4.146 19 C 0.106 3.894 20 H 0.071 0.929 21 C -0.157 4.157 22 C -0.177 4.177 23 C -0.162 4.162 24 O -0.341 6.341 25 N -0.067 5.067 26 N -0.263 5.263 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.186 0.814 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -27.372 -5.532 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.145 4.145 12 C -0.205 4.205 13 N -0.092 5.092 14 C -0.015 4.015 15 C 0.011 3.989 16 H 0.105 0.895 17 C -0.187 4.187 18 C -0.183 4.183 19 C 0.048 3.952 20 H 0.089 0.911 21 C -0.175 4.175 22 C -0.214 4.214 23 C -0.199 4.199 24 O -0.259 6.259 25 N -0.046 5.046 26 N -0.131 5.131 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.203 0.797 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.323 -27.687 -4.060 28.689 hybrid contribution 0.397 1.186 -1.382 1.864 sum -5.925 -26.501 -5.443 27.696 Atomic orbital electron populations 1.69696 1.05162 1.25443 1.57808 1.24763 0.95526 0.97704 1.03114 0.86085 0.78764 0.84052 0.77107 1.20484 1.21969 1.21888 1.19287 0.91117 0.83865 1.42512 0.90858 1.42330 1.06011 0.99308 1.89433 1.18923 0.90108 0.81459 0.99081 1.22432 1.02690 1.00733 0.88600 1.23382 0.99528 0.95648 1.01918 1.47177 1.30694 1.24414 1.06941 1.22496 0.97825 0.86949 0.94202 1.22968 0.99266 0.92284 0.84357 0.89523 1.23161 1.01321 0.95921 0.98308 1.23305 1.02218 0.98013 0.94809 1.22532 0.92430 0.87114 0.93100 0.91137 1.22305 1.00445 1.02038 0.92758 1.22995 0.92839 1.01550 1.03992 1.22875 1.01857 0.98798 0.96340 1.88766 1.55089 1.55642 1.26452 1.78441 1.18494 1.15590 0.92075 1.75138 1.07089 1.04438 1.26387 0.93621 0.78111 0.94427 0.94633 0.79721 0.88290 0.86944 0.89853 0.89321 0.90090 0.89630 0.87612 0.88767 0.88653 0.88744 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.06 55.49 0.72 -28.65 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.73 -19.72 5.59 -61.09 -0.34 -20.06 16 10 C 0.23 5.16 6.82 -5.19 -0.04 5.12 16 11 C -0.01 -0.14 6.62 -82.78 -0.55 -0.69 16 12 C -0.05 -0.88 11.50 -17.05 -0.20 -1.08 16 13 N -0.30 -4.54 3.44 -61.26 -0.21 -4.75 16 14 C 0.11 1.03 6.03 -4.04 -0.02 1.01 16 15 C 0.07 0.63 3.70 -26.00 -0.10 0.54 16 16 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.15 -0.80 6.56 -24.71 -0.16 -0.96 16 18 C -0.15 -0.85 6.58 -24.41 -0.16 -1.02 16 19 C 0.11 0.92 3.62 -25.70 -0.09 0.82 16 20 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 21 C -0.16 -1.36 5.48 -90.62 -0.50 -1.85 16 22 C -0.18 -1.32 10.19 -26.70 -0.27 -1.60 16 23 C -0.16 -1.57 10.21 -26.69 -0.27 -1.84 16 24 O -0.34 -4.07 9.79 -35.23 -0.35 -4.42 16 25 N -0.07 -1.29 12.18 60.35 0.74 -0.55 16 26 N -0.26 -5.77 12.41 33.29 0.41 -5.36 16 27 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.39 11.29 7.66 -40.82 -0.31 10.98 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.67 8.07 -51.93 -0.42 0.26 16 34 H 0.08 0.35 7.85 -51.93 -0.41 -0.06 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.47 7.94 -51.92 -0.41 0.06 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.11 0.85 7.97 -51.93 -0.41 0.43 16 39 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -36.35 353.11 -7.90 -44.25 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.57 Total: 5.38 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.60 Total: -9.10 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 1.32 Total: -59.37 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.35 Total: -4.42 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.35 -7.90 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887467478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.085 kcal (2) G-P(sol) polarization free energy of solvation -36.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds