Wall clock time and date at job start Tue Mar 31 2020 03:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.34963 * 126.68036 * 94.68090 * 14 13 12 16 16 N 1.34401 * 108.10121 * 179.88520 * 15 14 13 17 17 C 1.29783 * 109.18124 * 0.34693 * 16 15 14 18 18 N 1.35736 * 108.60570 * 359.83628 * 17 16 15 19 19 C 1.46533 * 123.52689 * 179.87402 * 18 17 16 20 20 C 1.53470 * 108.10868 * 343.72272 * 19 18 17 21 21 O 1.43029 * 109.67383 * 48.28735 * 20 19 18 22 22 C 1.43449 * 114.06722 * 289.88802 * 21 20 19 23 23 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 24 24 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 25 25 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 27 27 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 28 28 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 29 29 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 30 30 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 31 31 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 32 32 H 1.08002 * 125.95440 * 359.97438 * 15 14 13 33 33 H 1.08998 * 109.73453 * 103.37248 * 19 18 17 34 34 H 1.08995 * 109.73564 * 224.02129 * 19 18 17 35 35 H 1.09005 * 109.43662 * 168.35363 * 20 19 18 36 36 H 1.09006 * 109.43582 * 288.26672 * 20 19 18 37 37 H 1.09000 * 109.79606 * 169.18971 * 22 21 20 38 38 H 1.09010 * 109.79512 * 290.04180 * 22 21 20 39 39 H 1.09002 * 109.49350 * 303.14487 * 23 12 11 40 40 H 1.08999 * 109.49121 * 183.06761 * 23 12 11 41 41 H 1.08998 * 109.62394 * 350.89040 * 24 9 7 42 42 H 1.09003 * 109.62806 * 111.27869 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.3684 -4.8853 -4.9343 16 7 -1.6009 -5.0019 -5.4574 17 6 -2.3382 -5.7103 -4.6580 18 7 -1.5884 -6.0758 -3.5872 19 6 -2.1014 -6.8842 -2.4779 20 6 -3.6345 -6.8664 -2.5439 21 8 -4.0625 -7.1530 -3.8782 22 6 -3.7870 -6.1055 -4.8187 23 6 2.0052 -4.6207 -1.0114 24 6 1.8271 -3.6605 0.1695 25 1 -0.4850 0.8400 0.0004 26 1 -0.6889 -2.6172 -0.6930 27 1 0.0879 -1.3427 -1.6691 28 1 1.2905 -3.0222 -2.9917 29 1 -0.4418 -3.4325 -2.9953 30 1 1.7579 -5.5891 -3.3968 31 1 0.8077 -6.6863 -2.3663 32 1 0.4588 -4.3481 -5.3742 33 1 -1.7409 -7.9086 -2.5716 34 1 -1.7681 -6.4621 -1.5299 35 1 -4.0356 -7.6188 -1.8647 36 1 -3.9988 -5.8818 -2.2504 37 1 -3.9615 -6.4646 -5.8329 38 1 -4.4284 -5.2480 -4.6145 39 1 2.8210 -4.2714 -1.6443 40 1 2.2358 -5.6182 -0.6375 41 1 2.7786 -3.5350 0.6861 42 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891901315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:11 Heat of formation + Delta-G solvation = 62.579168 kcal Electronic energy + Delta-G solvation = -24315.660259 eV Core-core repulsion = 20912.084775 eV Total energy + Delta-G solvation = -3403.575484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44429 -38.58722 -37.94883 -34.71033 -34.05226 -31.81123 -30.45069 -29.90125 -29.89046 -27.69377 -25.83372 -24.31503 -23.80714 -22.58018 -22.22765 -20.76437 -19.38217 -18.97513 -17.54734 -16.80710 -16.59319 -15.82300 -15.44786 -15.34203 -14.87009 -14.56930 -14.34239 -14.25680 -13.91351 -13.46570 -13.33979 -13.06924 -13.03644 -12.86874 -12.30734 -12.02510 -11.78478 -11.49877 -11.40272 -11.07971 -10.76444 -10.53813 -10.39775 -10.32929 -10.11317 -9.89673 -9.77978 -9.65045 -9.50851 -8.52365 -8.23545 -7.83730 -6.68984 -5.79340 -3.21098 1.97393 2.59166 3.09835 3.37613 3.42746 3.44432 3.45450 4.05328 4.28784 4.42107 4.50137 4.57538 4.70424 4.97403 5.08656 5.17727 5.22477 5.31938 5.34699 5.37848 5.41577 5.42519 5.58887 5.79216 5.87160 5.91767 6.09399 6.23156 6.31369 6.42173 6.50879 6.52927 6.68086 6.81416 6.87157 7.11362 7.21721 7.49274 7.60865 7.67691 7.80076 8.08631 8.42226 9.19746 9.83140 10.41449 11.29401 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.004099 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.767646 B = 6829.614493 C = 7093.894085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.181 3.819 11 C 0.035 3.965 12 N -0.531 5.531 13 C 0.125 3.875 14 C 0.011 3.989 15 C -0.028 4.028 16 N -0.473 5.473 17 C 0.154 3.846 18 N -0.441 5.441 19 C 0.071 3.929 20 C 0.048 3.952 21 O -0.375 6.375 22 C 0.153 3.847 23 C 0.044 3.956 24 C 0.150 3.850 25 H 0.254 0.746 26 H 0.022 0.978 27 H 0.088 0.912 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 -15.612 -6.098 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.055 3.945 11 C -0.094 4.094 12 N -0.256 5.256 13 C -0.004 4.004 14 C -0.105 4.105 15 C -0.177 4.177 16 N -0.192 5.192 17 C -0.108 4.108 18 N -0.125 5.125 19 C -0.051 4.051 20 C -0.029 4.029 21 O -0.292 6.292 22 C 0.075 3.925 23 C -0.085 4.085 24 C 0.023 3.977 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.106 0.894 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.186 0.814 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.824 -15.506 -6.393 17.754 hybrid contribution 1.633 1.018 0.316 1.951 sum -4.191 -14.488 -6.076 16.260 Atomic orbital electron populations 1.70027 1.05256 1.25516 1.54000 1.25023 0.95289 0.98377 1.00914 0.86286 0.79083 0.83673 0.77716 1.21435 1.21727 1.20445 1.19202 0.92591 0.84823 1.41700 0.91612 1.44150 1.34389 1.01265 1.52025 1.20928 0.88713 0.96617 0.88232 1.23042 0.99069 0.88751 0.98532 1.62176 1.34813 1.06109 1.22521 1.20517 0.91897 0.97009 0.90988 1.20939 0.87138 1.03122 0.99344 1.22171 0.95742 1.04972 0.94778 1.69843 1.03135 1.17265 1.29005 1.23799 0.97230 1.02541 0.87260 1.44985 1.09571 1.39835 1.18098 1.22687 0.95843 0.96075 0.90540 1.22999 0.91618 1.03495 0.84819 1.88115 1.80946 1.42066 1.18121 1.21166 0.85586 0.91075 0.94679 1.22645 0.89453 0.99448 0.96938 1.20952 0.97814 0.86538 0.92408 0.93603 0.95975 0.89422 0.95549 0.91760 0.92834 0.90741 0.81401 0.89296 0.87185 0.86351 0.91274 0.85963 0.89919 0.95087 0.92033 0.92531 0.95841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 11.16 55.49 0.62 -25.86 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -7.00 9.63 -15.06 -0.15 -7.15 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 9 N -0.59 -15.07 3.03 -171.73 -0.52 -15.59 16 10 C 0.18 4.45 5.45 -3.36 -0.02 4.43 16 11 C 0.03 0.70 5.06 -3.46 -0.02 0.68 16 12 N -0.53 -9.14 4.77 -235.46 -1.12 -10.27 16 13 C 0.12 1.76 5.63 -4.98 -0.03 1.73 16 14 C 0.01 0.16 4.94 -81.94 -0.40 -0.25 16 15 C -0.03 -0.44 10.53 -17.59 -0.19 -0.63 16 16 N -0.47 -7.76 11.24 -10.56 -0.12 -7.88 16 17 C 0.15 2.20 7.79 -155.21 -1.21 0.99 16 18 N -0.44 -6.07 3.14 -109.09 -0.34 -6.41 16 19 C 0.07 0.73 7.14 -3.78 -0.03 0.70 16 20 C 0.05 0.42 6.82 37.40 0.26 0.67 16 21 O -0.38 -3.92 10.78 -35.23 -0.38 -4.30 16 22 C 0.15 1.62 7.29 36.17 0.26 1.89 16 23 C 0.04 0.76 5.58 -3.70 -0.02 0.74 16 24 C 0.15 3.12 6.69 -3.60 -0.02 3.10 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.29 5.74 -51.93 -0.30 0.99 16 30 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -32.55 332.30 -10.02 -42.58 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.49 Total: -0.99 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.65 Total: 6.90 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -1.49 Total: -66.00 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.38 Total: -4.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.55 -10.02 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891901315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.156 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds