Wall clock time and date at job start Tue Mar 31 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.34963 * 126.68036 * 94.68090 * 14 13 12 16 16 N 1.34401 * 108.10121 * 179.88520 * 15 14 13 17 17 C 1.29783 * 109.18124 * 0.34693 * 16 15 14 18 18 N 1.35736 * 108.60570 * 359.83628 * 17 16 15 19 19 C 1.46533 * 123.52689 * 179.87402 * 18 17 16 20 20 C 1.53470 * 108.10868 * 343.72272 * 19 18 17 21 21 O 1.43029 * 109.67383 * 48.28735 * 20 19 18 22 22 C 1.43449 * 114.06722 * 289.88802 * 21 20 19 23 23 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 24 24 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 25 25 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 27 27 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 28 28 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 29 29 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 30 30 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 31 31 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 32 32 H 1.08002 * 125.95440 * 359.97438 * 15 14 13 33 33 H 1.08998 * 109.73453 * 103.37248 * 19 18 17 34 34 H 1.08995 * 109.73564 * 224.02129 * 19 18 17 35 35 H 1.09005 * 109.43662 * 168.35363 * 20 19 18 36 36 H 1.09006 * 109.43582 * 288.26672 * 20 19 18 37 37 H 1.09000 * 109.79606 * 169.18971 * 22 21 20 38 38 H 1.09010 * 109.79512 * 290.04180 * 22 21 20 39 39 H 1.09002 * 109.49350 * 303.14487 * 23 12 11 40 40 H 1.08999 * 109.49121 * 183.06761 * 23 12 11 41 41 H 1.08998 * 109.62394 * 350.89040 * 24 9 7 42 42 H 1.09003 * 109.62806 * 111.27869 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.3684 -4.8853 -4.9343 16 7 -1.6009 -5.0019 -5.4574 17 6 -2.3382 -5.7103 -4.6580 18 7 -1.5884 -6.0758 -3.5872 19 6 -2.1014 -6.8842 -2.4779 20 6 -3.6345 -6.8664 -2.5439 21 8 -4.0625 -7.1530 -3.8782 22 6 -3.7870 -6.1055 -4.8187 23 6 2.0052 -4.6207 -1.0114 24 6 1.8271 -3.6605 0.1695 25 1 -0.4850 0.8400 0.0004 26 1 -0.6889 -2.6172 -0.6930 27 1 0.0879 -1.3427 -1.6691 28 1 1.2905 -3.0222 -2.9917 29 1 -0.4418 -3.4325 -2.9953 30 1 1.7579 -5.5891 -3.3968 31 1 0.8077 -6.6863 -2.3663 32 1 0.4588 -4.3481 -5.3742 33 1 -1.7409 -7.9086 -2.5716 34 1 -1.7681 -6.4621 -1.5299 35 1 -4.0356 -7.6188 -1.8647 36 1 -3.9988 -5.8818 -2.2504 37 1 -3.9615 -6.4646 -5.8329 38 1 -4.4284 -5.2480 -4.6145 39 1 2.8210 -4.2714 -1.6443 40 1 2.2358 -5.6182 -0.6375 41 1 2.7786 -3.5350 0.6861 42 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891901315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:10 Heat of formation + Delta-G solvation = 39.765681 kcal Electronic energy + Delta-G solvation = -24316.649526 eV Core-core repulsion = 20912.084775 eV Total energy + Delta-G solvation = -3404.564751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50135 -39.76520 -39.16270 -36.39289 -35.09785 -33.55720 -31.81356 -31.54723 -30.86925 -29.07231 -27.20621 -25.77634 -24.73282 -24.25297 -23.81562 -21.83474 -20.90160 -20.18894 -18.78753 -18.40269 -17.57282 -17.07375 -16.71084 -16.32417 -16.26661 -15.87533 -15.76035 -15.48149 -15.31482 -15.11992 -14.88967 -14.63247 -14.26675 -13.91016 -13.49952 -13.29419 -13.15480 -12.94855 -12.79057 -12.63286 -12.34966 -12.22976 -12.09042 -11.95127 -11.66231 -11.48816 -11.24041 -10.98032 -10.61832 -10.57257 -9.47113 -9.16520 -8.71573 -7.90359 -5.35326 0.88347 1.44640 1.46655 1.55121 1.64771 1.96610 2.48752 2.67326 3.04090 3.15431 3.26007 3.45712 3.59130 3.65964 3.97300 4.08070 4.16303 4.25579 4.27268 4.32376 4.34482 4.46710 4.51737 4.56801 4.60780 4.63900 4.65155 4.70031 4.82538 4.88618 5.00570 5.16313 5.31021 5.34487 5.58625 5.61626 5.64015 5.79750 6.06491 6.10679 6.19111 6.34615 6.98302 7.10166 7.81287 8.35235 9.16509 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.004099 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.767646 B = 6829.614493 C = 7093.894085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.613 5.613 10 C 0.192 3.808 11 C 0.061 3.939 12 N -0.534 5.534 13 C 0.132 3.868 14 C 0.002 3.998 15 C -0.049 4.049 16 N -0.507 5.507 17 C 0.150 3.850 18 N -0.445 5.445 19 C 0.066 3.934 20 C 0.047 3.953 21 O -0.379 6.379 22 C 0.154 3.846 23 C 0.055 3.945 24 C 0.144 3.856 25 H 0.249 0.751 26 H -0.007 1.007 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.062 0.938 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.028 0.972 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 -17.665 -5.933 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.065 3.935 11 C -0.068 4.068 12 N -0.259 5.259 13 C 0.004 3.996 14 C -0.115 4.115 15 C -0.198 4.198 16 N -0.227 5.227 17 C -0.113 4.113 18 N -0.128 5.128 19 C -0.055 4.055 20 C -0.029 4.029 21 O -0.296 6.296 22 C 0.076 3.924 23 C -0.073 4.073 24 C 0.018 3.982 25 H 0.059 0.941 26 H 0.011 0.989 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.081 0.919 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.046 0.954 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.223 -17.608 -6.213 19.389 hybrid contribution 1.420 1.583 0.303 2.148 sum -3.803 -16.025 -5.909 17.498 Atomic orbital electron populations 1.70190 1.06777 1.25837 1.55573 1.25796 0.96015 1.01557 1.01257 0.85266 0.78220 0.79492 0.77500 1.21411 1.22124 1.18996 1.19569 0.92990 0.86009 1.40851 0.91182 1.44418 1.34285 1.02423 1.52630 1.20615 0.87793 0.96013 0.89044 1.22545 0.98667 0.89390 0.96214 1.62082 1.35192 1.05029 1.23638 1.20556 0.92004 0.96778 0.90238 1.21032 0.87970 1.03265 0.99184 1.22372 0.96002 1.05738 0.95693 1.69804 1.03734 1.18752 1.30422 1.24481 0.98418 1.01470 0.86931 1.45254 1.09129 1.39692 1.18693 1.22968 0.96823 0.96467 0.89263 1.23188 0.90679 1.04429 0.84624 1.88116 1.80807 1.41977 1.18706 1.21368 0.83575 0.91740 0.95762 1.22515 0.89066 1.00464 0.95290 1.21148 0.97669 0.85305 0.94036 0.94149 0.98871 0.93147 0.96373 0.91979 0.91762 0.87905 0.81298 0.87276 0.87423 0.83022 0.91932 0.84388 0.88873 0.95353 0.87822 0.91813 0.96432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 11.16 21.65 0.24 -56.50 16 2 C -0.05 -2.90 4.93 84.86 0.42 -2.48 16 3 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.26 -14.70 9.63 84.03 0.81 -13.89 16 8 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -31.37 3.03 -697.23 -2.11 -33.48 16 10 C 0.19 9.71 5.45 86.50 0.47 10.18 16 11 C 0.06 2.46 5.06 86.54 0.44 2.90 16 12 N -0.53 -17.39 4.77 -898.86 -4.29 -21.68 16 13 C 0.13 3.36 5.63 85.56 0.48 3.84 16 14 C 0.00 0.06 4.94 41.17 0.20 0.27 16 15 C -0.05 -1.56 10.53 83.55 0.88 -0.68 16 16 N -0.51 -16.58 11.24 -187.32 -2.11 -18.68 16 17 C 0.15 4.14 7.79 138.22 1.08 5.22 16 18 N -0.44 -11.51 3.14 -499.06 -1.57 -13.08 16 19 C 0.07 1.19 7.14 86.53 0.62 1.81 16 20 C 0.05 0.71 6.82 72.14 0.49 1.20 16 21 O -0.38 -7.01 10.78 -148.98 -1.61 -8.61 16 22 C 0.15 3.02 7.29 71.34 0.52 3.54 16 23 C 0.06 1.75 5.58 86.38 0.48 2.24 16 24 C 0.14 5.84 6.69 86.35 0.58 6.42 16 25 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 26 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.05 2.91 6.12 -2.39 -0.01 2.89 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 2.53 5.74 -2.38 -0.01 2.51 16 30 H 0.06 1.55 8.08 -2.38 -0.02 1.53 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 1.03 8.09 -2.38 -0.02 1.01 16 37 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 41 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.95 332.30 -0.94 -72.88 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.00 Total: 11.11 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 7.47 Total: 20.56 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -9.83 Total: -143.41 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -1.61 Total: -8.61 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.95 -0.94 -72.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891901315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.649 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds