Wall clock time and date at job start Tue Mar 31 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33315 * 126.10667 * 2 1 4 4 C 1.30857 * 109.68894 * 180.27499 * 3 2 1 5 5 N 1.34503 * 109.16151 * 359.76910 * 4 3 2 6 6 H 0.96998 * 126.47365 * 180.02562 * 5 4 3 7 7 C 1.36660 * 126.10878 * 179.88432 * 2 1 3 8 8 C 1.46765 * 126.84634 * 359.97438 * 7 2 1 9 9 O 1.21689 * 119.99624 * 359.71212 * 8 7 2 10 10 N 1.34780 * 120.00314 * 179.71077 * 8 7 2 11 11 C 1.46494 * 119.99947 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47089 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.52140 * 54.92110 * 12 11 10 14 14 C 1.53047 * 109.49771 * 174.99943 * 12 11 10 15 15 C 1.53043 * 109.52620 * 181.31352 * 14 12 11 16 16 C 1.53197 * 109.31117 * 298.64048 * 15 14 12 17 17 N 1.46935 * 108.77543 * 54.63623 * 16 15 14 18 18 C 1.36937 * 120.62866 * 126.41090 * 17 16 15 19 19 H 1.07997 * 119.99683 * 207.66800 * 18 17 16 20 20 C 1.38804 * 119.99953 * 27.67595 * 18 17 16 21 21 N 1.31617 * 120.00554 * 17.35896 * 20 18 17 22 22 Si 1.86804 * 119.99695 * 197.36613 * 20 18 17 23 23 H 1.48498 * 109.47214 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47336 * 120.00014 * 22 20 18 25 25 H 1.48506 * 109.46834 * 239.99637 * 22 20 18 26 26 C 1.46922 * 118.73688 * 306.39116 * 17 16 15 27 27 H 1.08999 * 109.46973 * 270.11399 * 1 2 3 28 28 H 1.08999 * 109.47341 * 30.12151 * 1 2 3 29 29 H 1.09007 * 109.46902 * 150.11725 * 1 2 3 30 30 H 1.08002 * 125.42260 * 179.74192 * 4 3 2 31 31 H 0.96999 * 119.99696 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47311 * 59.99938 * 11 10 8 33 33 H 1.09007 * 109.47195 * 300.00217 * 11 10 8 34 34 H 1.08998 * 109.45928 * 61.29803 * 14 12 11 35 35 H 1.08996 * 109.45775 * 301.32073 * 14 12 11 36 36 H 1.08994 * 109.49831 * 58.58858 * 15 14 12 37 37 H 1.08996 * 109.49806 * 178.69480 * 15 14 12 38 38 H 1.09000 * 109.58520 * 174.42198 * 16 15 14 39 39 H 1.08997 * 109.59021 * 294.70633 * 16 15 14 40 40 H 0.96998 * 120.00355 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.58987 * 173.39367 * 26 17 16 42 42 H 1.08999 * 109.59251 * 293.67917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 1 4.4189 -1.1749 -0.0080 7 6 2.3124 -1.1041 0.0022 8 6 1.8822 -2.5073 0.0056 9 8 0.6962 -2.7800 0.0119 10 7 2.8005 -3.4938 0.0016 11 6 2.3710 -4.8943 0.0044 12 6 3.6006 -5.8048 -0.0018 13 1 4.2491 -5.5468 0.8355 14 6 3.1565 -7.2638 0.1269 15 6 4.3875 -8.1727 0.1537 16 6 5.1613 -8.0165 -1.1592 17 7 5.4661 -6.5935 -1.3620 18 6 6.7519 -6.1811 -1.5899 19 1 7.0584 -5.1859 -1.3036 20 6 7.6611 -7.0420 -2.1889 21 7 7.2326 -8.1019 -2.8411 22 14 9.4930 -6.6965 -2.0691 23 1 9.7121 -5.4524 -1.2884 24 1 10.1677 -7.8324 -1.3909 25 1 10.0555 -6.5299 -3.4334 26 6 4.3652 -5.6217 -1.3162 27 1 -0.3633 0.0020 1.0277 28 1 -0.3634 0.8889 -0.5157 29 1 -0.3633 -0.8911 -0.5120 30 1 4.3970 1.3745 -0.0113 31 1 3.7458 -3.2763 -0.0038 32 1 1.7689 -5.0915 -0.8826 33 1 1.7775 -5.0906 0.8974 34 1 2.5281 -7.5284 -0.7235 35 1 2.5909 -7.3911 1.0499 36 1 5.0286 -7.8923 0.9894 37 1 4.0717 -9.2096 0.2686 38 1 6.0897 -8.5851 -1.1060 39 1 4.5547 -8.3840 -1.9869 40 1 7.8680 -8.7037 -3.2594 41 1 4.7682 -4.6102 -1.3666 42 1 3.6939 -5.7899 -2.1584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896632293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:24 Heat of formation + Delta-G solvation = 26.730436 kcal Electronic energy + Delta-G solvation = -23410.752546 eV Core-core repulsion = 20005.622544 eV Total energy + Delta-G solvation = -3405.130002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38335 -39.44493 -37.83080 -35.05038 -33.56069 -32.92434 -31.40217 -30.54676 -30.32380 -27.49486 -25.57155 -25.29876 -23.09210 -22.18936 -21.48199 -20.83315 -19.94514 -19.29430 -18.69391 -16.82726 -16.20051 -15.91287 -15.86969 -15.02173 -14.89033 -14.61228 -14.14968 -13.98854 -13.66201 -13.50977 -13.07287 -12.88914 -12.87747 -12.46164 -12.31331 -12.27307 -12.17624 -11.39147 -11.11123 -10.81312 -10.60142 -10.58707 -10.31487 -10.26437 -10.20637 -10.05944 -9.95536 -9.65389 -9.51306 -9.15417 -8.62380 -8.55858 -6.77788 -5.88494 -3.31705 1.14730 2.67433 2.69258 3.11642 3.23362 3.28763 3.36343 3.38210 4.26587 4.38698 4.65651 4.86406 5.01111 5.07881 5.20394 5.34068 5.36069 5.50840 5.54405 5.70325 5.74498 5.81139 5.85154 5.91217 5.96577 6.13260 6.22459 6.28081 6.34795 6.43723 6.49003 6.61362 6.67175 6.77234 6.85753 6.97678 7.31466 7.36989 7.58889 7.68481 7.72785 8.08441 8.34327 9.10698 9.74304 10.31015 11.19643 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.003825 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.806583 B = 7318.771168 C = 8620.843503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.094 3.906 3 N -0.502 5.502 4 C 0.220 3.780 5 N -0.554 5.554 6 H 0.425 0.575 7 C -0.092 4.092 8 C 0.593 3.407 9 O -0.528 6.528 10 N -0.722 5.722 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.072 0.928 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.154 3.846 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.216 0.784 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 11.001 7.151 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 N -0.222 5.222 4 C -0.065 4.065 5 N -0.159 5.159 6 H 0.264 0.736 7 C -0.207 4.207 8 C 0.379 3.621 9 O -0.404 6.404 10 N -0.373 5.373 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.027 3.973 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.230 0.770 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.542 11.435 7.051 15.920 hybrid contribution 2.442 -0.821 -0.021 2.577 sum -6.100 10.614 7.030 14.117 Atomic orbital electron populations 1.20287 0.86534 1.03656 1.02967 1.21072 0.96914 0.86640 0.99418 1.70137 1.00491 1.30488 1.21087 1.25152 0.97406 0.82108 1.01803 1.43386 1.08161 1.08892 1.55464 0.73618 1.21002 0.84357 0.95232 1.20139 1.16823 0.85940 0.82571 0.76776 1.90809 1.16021 1.82957 1.50641 1.45973 1.09315 1.06941 1.75055 1.21519 0.97425 0.78465 1.02127 1.21962 0.95307 0.94938 1.01666 0.90931 1.21340 0.98030 0.93880 1.00517 1.22169 0.96735 0.97428 1.01749 1.20805 0.98663 0.85559 0.90688 1.44043 1.02696 1.01894 1.82743 1.19160 0.85866 1.00128 1.33466 0.91817 1.25035 0.98633 0.98631 0.97184 1.70043 1.33011 1.15919 1.35360 0.86253 0.85580 0.77677 0.77382 1.20337 1.21470 1.21674 1.20877 0.90322 0.93511 0.92547 0.90835 0.91142 0.89234 0.76792 0.76977 0.91206 0.91596 0.92362 0.93330 0.92767 0.93084 0.89519 0.96393 0.93575 0.93540 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.88 36.01 0.36 -0.53 16 2 C 0.09 1.23 7.15 -82.52 -0.59 0.64 16 3 N -0.50 -6.21 11.20 -10.64 -0.12 -6.33 16 4 C 0.22 1.96 13.01 -90.57 -1.18 0.78 16 5 N -0.55 -5.01 6.07 -10.79 -0.07 -5.07 16 6 H 0.42 2.68 8.32 -40.82 -0.34 2.34 16 7 C -0.09 -1.14 7.08 -82.14 -0.58 -1.72 16 8 C 0.59 8.25 7.79 -12.81 -0.10 8.15 16 9 O -0.53 -8.71 14.82 5.20 0.08 -8.63 16 10 N -0.72 -9.09 5.33 -61.59 -0.33 -9.42 16 11 C 0.13 1.75 5.07 -4.05 -0.02 1.73 16 12 C -0.12 -1.82 2.37 -90.51 -0.21 -2.03 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.10 -1.55 5.17 -26.68 -0.14 -1.69 16 15 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 16 C 0.17 3.85 5.31 -3.70 -0.02 3.83 16 17 N -0.59 -13.95 2.99 -172.33 -0.52 -14.47 16 18 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 19 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16 20 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 21 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 22 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.15 2.94 5.60 -3.73 -0.02 2.92 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.12 6.49 -51.93 -0.34 0.78 16 30 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.40 4.32 6.95 -40.82 -0.28 4.03 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.24 6.04 -51.93 -0.31 1.92 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.05 0.84 7.14 -51.93 -0.37 0.46 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -32.32 340.24 -9.40 -41.71 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.27 Total: 3.47 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.90 Total: 2.57 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.41 Total: -60.01 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.32 -9.40 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.443 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds