Wall clock time and date at job start Tue Mar 31 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33315 * 126.10667 * 2 1 4 4 C 1.30857 * 109.68894 * 180.27499 * 3 2 1 5 5 N 1.34503 * 109.16151 * 359.76910 * 4 3 2 6 6 H 0.96998 * 126.47365 * 180.02562 * 5 4 3 7 7 C 1.36660 * 126.10878 * 179.88432 * 2 1 3 8 8 C 1.46765 * 126.84634 * 359.97438 * 7 2 1 9 9 O 1.21689 * 119.99624 * 359.71212 * 8 7 2 10 10 N 1.34780 * 120.00314 * 179.71077 * 8 7 2 11 11 C 1.46494 * 119.99947 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47089 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.52140 * 54.92110 * 12 11 10 14 14 C 1.53047 * 109.49771 * 174.99943 * 12 11 10 15 15 C 1.53043 * 109.52620 * 181.31352 * 14 12 11 16 16 C 1.53197 * 109.31117 * 298.64048 * 15 14 12 17 17 N 1.46935 * 108.77543 * 54.63623 * 16 15 14 18 18 C 1.36937 * 120.62866 * 126.41090 * 17 16 15 19 19 H 1.07997 * 119.99683 * 207.66800 * 18 17 16 20 20 C 1.38804 * 119.99953 * 27.67595 * 18 17 16 21 21 N 1.31617 * 120.00554 * 17.35896 * 20 18 17 22 22 Si 1.86804 * 119.99695 * 197.36613 * 20 18 17 23 23 H 1.48498 * 109.47214 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47336 * 120.00014 * 22 20 18 25 25 H 1.48506 * 109.46834 * 239.99637 * 22 20 18 26 26 C 1.46922 * 118.73688 * 306.39116 * 17 16 15 27 27 H 1.08999 * 109.46973 * 270.11399 * 1 2 3 28 28 H 1.08999 * 109.47341 * 30.12151 * 1 2 3 29 29 H 1.09007 * 109.46902 * 150.11725 * 1 2 3 30 30 H 1.08002 * 125.42260 * 179.74192 * 4 3 2 31 31 H 0.96999 * 119.99696 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47311 * 59.99938 * 11 10 8 33 33 H 1.09007 * 109.47195 * 300.00217 * 11 10 8 34 34 H 1.08998 * 109.45928 * 61.29803 * 14 12 11 35 35 H 1.08996 * 109.45775 * 301.32073 * 14 12 11 36 36 H 1.08994 * 109.49831 * 58.58858 * 15 14 12 37 37 H 1.08996 * 109.49806 * 178.69480 * 15 14 12 38 38 H 1.09000 * 109.58520 * 174.42198 * 16 15 14 39 39 H 1.08997 * 109.59021 * 294.70633 * 16 15 14 40 40 H 0.96998 * 120.00355 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.58987 * 173.39367 * 26 17 16 42 42 H 1.08999 * 109.59251 * 293.67917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 1 4.4189 -1.1749 -0.0080 7 6 2.3124 -1.1041 0.0022 8 6 1.8822 -2.5073 0.0056 9 8 0.6962 -2.7800 0.0119 10 7 2.8005 -3.4938 0.0016 11 6 2.3710 -4.8943 0.0044 12 6 3.6006 -5.8048 -0.0018 13 1 4.2491 -5.5468 0.8355 14 6 3.1565 -7.2638 0.1269 15 6 4.3875 -8.1727 0.1537 16 6 5.1613 -8.0165 -1.1592 17 7 5.4661 -6.5935 -1.3620 18 6 6.7519 -6.1811 -1.5899 19 1 7.0584 -5.1859 -1.3036 20 6 7.6611 -7.0420 -2.1889 21 7 7.2326 -8.1019 -2.8411 22 14 9.4930 -6.6965 -2.0691 23 1 9.7121 -5.4524 -1.2884 24 1 10.1677 -7.8324 -1.3909 25 1 10.0555 -6.5299 -3.4334 26 6 4.3652 -5.6217 -1.3162 27 1 -0.3633 0.0020 1.0277 28 1 -0.3634 0.8889 -0.5157 29 1 -0.3633 -0.8911 -0.5120 30 1 4.3970 1.3745 -0.0113 31 1 3.7458 -3.2763 -0.0038 32 1 1.7689 -5.0915 -0.8826 33 1 1.7775 -5.0906 0.8974 34 1 2.5281 -7.5284 -0.7235 35 1 2.5909 -7.3911 1.0499 36 1 5.0286 -7.8923 0.9894 37 1 4.0717 -9.2096 0.2686 38 1 6.0897 -8.5851 -1.1060 39 1 4.5547 -8.3840 -1.9869 40 1 7.8680 -8.7037 -3.2594 41 1 4.7682 -4.6102 -1.3666 42 1 3.6939 -5.7899 -2.1584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896632293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:24 Heat of formation + Delta-G solvation = 5.655726 kcal Electronic energy + Delta-G solvation = -23411.666414 eV Core-core repulsion = 20005.622544 eV Total energy + Delta-G solvation = -3406.043870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.20743 -40.57151 -39.28830 -36.38054 -34.87659 -34.09011 -32.45436 -32.30012 -31.63076 -28.46997 -27.27253 -26.66385 -24.10281 -23.73934 -22.72549 -21.94559 -21.08021 -20.51908 -19.67854 -18.65045 -17.17755 -17.02594 -16.86965 -16.75740 -16.12739 -15.69688 -15.41306 -15.22696 -15.04934 -14.94290 -14.52632 -14.04038 -13.92303 -13.78338 -13.72318 -13.58548 -13.08990 -13.02400 -12.91190 -12.53766 -12.25541 -11.96272 -11.84197 -11.62069 -11.54651 -11.33387 -11.11769 -11.02783 -10.89511 -10.55143 -10.24109 -9.50474 -8.69813 -7.87808 -5.33573 0.25157 1.45822 1.48248 1.57633 1.84719 1.89753 2.15872 2.23812 2.50036 3.27490 3.54233 3.56988 3.80727 3.96209 3.99519 4.02385 4.14130 4.29283 4.40080 4.54833 4.59881 4.71295 4.74531 4.82558 4.85900 4.88817 4.97442 4.98878 5.05606 5.09762 5.19917 5.30984 5.35052 5.43317 5.55534 5.56137 5.65887 5.77801 6.29295 6.37466 6.41630 6.90955 7.05144 7.13639 7.85093 8.37232 9.18606 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.003825 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.806583 B = 7318.771168 C = 8620.843503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 N -0.535 5.535 4 C 0.240 3.760 5 N -0.543 5.543 6 H 0.438 0.562 7 C -0.111 4.111 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.715 5.715 11 C 0.138 3.862 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.293 1.293 25 H -0.296 1.296 26 C 0.152 3.848 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.262 0.738 31 H 0.406 0.594 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.051 0.949 39 H -0.009 1.009 40 H 0.248 0.752 41 H 0.057 0.943 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 12.672 8.705 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 N -0.256 5.256 4 C -0.044 4.044 5 N -0.149 5.149 6 H 0.280 0.720 7 C -0.227 4.227 8 C 0.381 3.619 9 O -0.438 6.438 10 N -0.366 5.366 11 C 0.015 3.985 12 C -0.120 4.120 13 H 0.097 0.903 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.185 1.185 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.026 3.974 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.278 0.722 31 H 0.241 0.759 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.009 0.991 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -7.991 13.118 8.626 17.616 hybrid contribution 2.273 -1.275 -0.541 2.662 sum -5.717 11.844 8.085 15.438 Atomic orbital electron populations 1.20252 0.86432 1.03354 1.03182 1.21338 0.97565 0.87271 0.99507 1.70148 1.01928 1.30665 1.22851 1.26088 0.97637 0.82341 0.98362 1.43336 1.07559 1.09185 1.54842 0.72001 1.20753 0.85807 0.94288 1.21883 1.16991 0.85559 0.83257 0.76121 1.90790 1.17316 1.83547 1.52195 1.45854 1.09720 1.06356 1.74651 1.21335 0.96336 0.78609 1.02264 1.21715 0.95504 0.95467 0.99316 0.90321 1.21342 0.96994 0.93124 1.02112 1.21995 0.97140 0.99322 0.98428 1.20634 0.97183 0.85082 0.92468 1.44318 1.03240 1.02755 1.82903 1.19587 0.87066 1.00330 1.32091 0.90855 1.25800 1.02572 0.98854 0.97534 1.70205 1.33949 1.17143 1.36987 0.85245 0.80671 0.77830 0.76907 1.18489 1.22023 1.22336 1.21020 0.89231 0.92991 0.94111 0.90367 0.90269 0.90596 0.72247 0.75878 0.92150 0.90458 0.92648 0.90036 0.92734 0.91337 0.93054 0.99070 0.94247 0.92493 0.97750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 9.88 71.24 0.70 -1.01 16 2 C 0.08 1.95 7.15 41.96 0.30 2.25 16 3 N -0.54 -12.21 11.20 -187.59 -2.10 -14.31 16 4 C 0.24 3.51 13.01 180.33 2.35 5.86 16 5 N -0.54 -8.36 6.07 -188.04 -1.14 -9.50 16 6 H 0.44 4.15 8.32 -92.71 -0.77 3.38 16 7 C -0.11 -2.61 7.08 40.01 0.28 -2.32 16 8 C 0.59 15.83 7.79 86.47 0.67 16.50 16 9 O -0.56 -18.23 14.82 -4.31 -0.06 -18.30 16 10 N -0.71 -16.61 5.33 -466.99 -2.49 -19.10 16 11 C 0.14 3.49 5.07 86.38 0.44 3.93 16 12 C -0.10 -2.85 2.37 -10.72 -0.03 -2.87 16 13 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 14 C -0.10 -2.81 5.17 30.62 0.16 -2.66 16 15 C -0.13 -4.51 6.08 30.67 0.19 -4.32 16 16 C 0.17 8.01 5.31 86.36 0.46 8.46 16 17 N -0.61 -28.71 2.99 -699.14 -2.09 -30.80 16 18 C -0.26 -13.46 9.58 84.03 0.81 -12.65 16 19 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 20 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 21 N -0.94 -54.34 11.19 21.65 0.24 -54.10 16 22 Si 0.96 42.90 29.59 68.60 2.03 44.93 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 26 C 0.15 5.66 5.60 86.35 0.48 6.14 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.94 6.49 -2.38 -0.02 1.92 16 30 H 0.26 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.41 7.84 6.95 -92.71 -0.64 7.20 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.74 6.04 -2.39 -0.01 2.72 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.06 1.96 7.14 -2.39 -0.02 1.94 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -71.59 340.24 1.24 -70.35 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -0.37 Total: 15.93 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 7.23 Total: 14.91 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -7.58 Total: -127.82 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.59 1.24 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.004 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds