Wall clock time and date at job start Tue Mar 31 2020 04:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33318 * 126.10592 * 2 1 4 4 C 1.30859 * 109.68252 * 180.02562 * 3 2 1 5 5 N 1.34496 * 109.16679 * 359.76657 * 4 3 2 6 6 H 0.96994 * 126.47211 * 180.24940 * 5 4 3 7 7 C 1.36658 * 126.10886 * 180.02562 * 2 1 3 8 8 C 1.46767 * 126.84096 * 359.95277 * 7 2 1 9 9 O 1.21684 * 120.00483 * 0.02562 * 8 7 2 10 10 N 1.34782 * 120.00199 * 180.02562 * 8 7 2 11 11 C 1.46489 * 120.00456 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47409 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.49899 * 305.06585 * 12 11 10 14 14 C 1.53039 * 109.49938 * 184.99872 * 12 11 10 15 15 C 1.53045 * 109.53823 * 178.65416 * 14 12 11 16 16 C 1.53190 * 109.31268 * 61.36420 * 15 14 12 17 17 N 1.46922 * 108.77625 * 305.36643 * 16 15 14 18 18 C 1.36943 * 120.63253 * 233.58592 * 17 16 15 19 19 H 1.07990 * 120.00256 * 152.29272 * 18 17 16 20 20 C 1.38815 * 119.99581 * 332.29987 * 18 17 16 21 21 N 1.31620 * 120.00321 * 342.60833 * 20 18 17 22 22 Si 1.86797 * 120.00011 * 162.60927 * 20 18 17 23 23 H 1.48498 * 109.47121 * 94.34418 * 22 20 18 24 24 H 1.48494 * 109.47249 * 214.34635 * 22 20 18 25 25 H 1.48498 * 109.46937 * 334.34891 * 22 20 18 26 26 C 1.46922 * 118.73992 * 53.86210 * 17 16 15 27 27 H 1.09005 * 109.46513 * 269.99749 * 1 2 3 28 28 H 1.09005 * 109.47200 * 29.99647 * 1 2 3 29 29 H 1.08999 * 109.47205 * 149.99774 * 1 2 3 30 30 H 1.08004 * 125.41449 * 180.02562 * 4 3 2 31 31 H 0.97004 * 119.99274 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.47213 * 60.00004 * 11 10 8 33 33 H 1.08999 * 109.47142 * 300.00334 * 11 10 8 34 34 H 1.08998 * 109.45900 * 58.63499 * 14 12 11 35 35 H 1.08997 * 109.45267 * 298.66396 * 14 12 11 36 36 H 1.09000 * 109.49357 * 301.41438 * 15 14 12 37 37 H 1.09006 * 109.52292 * 181.33825 * 15 14 12 38 38 H 1.09003 * 109.58516 * 185.58004 * 16 15 14 39 39 H 1.09000 * 109.70365 * 65.22328 * 16 15 14 40 40 H 0.96992 * 120.00549 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.58771 * 65.92198 * 26 17 16 42 42 H 1.08998 * 109.58854 * 186.35641 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6122 -0.6363 0.0042 6 1 4.4189 -1.1748 0.0084 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5072 -0.0002 9 8 0.6962 -2.7800 0.0002 10 7 2.8004 -3.4938 -0.0002 11 6 2.3709 -4.8943 -0.0004 12 6 3.6005 -5.8048 -0.0011 13 1 4.2439 -5.5468 -0.8422 14 6 3.1557 -7.2637 -0.1270 15 6 4.3863 -8.1729 -0.1615 16 6 5.1682 -8.0170 1.1465 17 7 5.4745 -6.5942 1.3477 18 6 6.7617 -6.1819 1.5677 19 1 7.0668 -5.1870 1.2792 20 6 7.6744 -7.0430 2.1616 21 7 7.2495 -8.1022 2.8171 22 14 9.5056 -6.6984 2.0303 23 1 9.9544 -5.9438 3.2279 24 1 10.2463 -7.9827 1.9481 25 1 9.7717 -5.8945 0.8104 26 6 4.3728 -5.6228 1.3145 27 1 -0.3632 0.0000 1.0278 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 4.3970 1.3745 -0.0003 31 1 3.7457 -3.2763 -0.0001 32 1 1.7732 -5.0910 -0.8906 33 1 1.7730 -5.0911 0.8894 34 1 2.5843 -7.3911 -1.0464 35 1 2.5327 -7.5283 0.7273 36 1 5.0223 -7.8925 -1.0012 37 1 4.0701 -9.2099 -0.2751 38 1 6.0962 -8.5858 1.0875 39 1 4.5678 -8.3828 1.9794 40 1 7.8871 -8.7037 3.2324 41 1 3.7066 -5.7968 2.1595 42 1 4.7757 -4.6114 1.3662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896632294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:29 Heat of formation + Delta-G solvation = 26.775060 kcal Electronic energy + Delta-G solvation = -23408.548699 eV Core-core repulsion = 20003.420633 eV Total energy + Delta-G solvation = -3405.128067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38344 -39.43947 -37.81306 -35.04802 -33.55819 -32.92175 -31.40013 -30.54005 -30.31534 -27.49277 -25.56547 -25.29520 -23.09101 -22.17917 -21.47818 -20.83261 -19.94458 -19.29556 -18.69206 -16.82389 -16.19971 -15.89960 -15.88006 -15.00846 -14.88669 -14.62051 -14.14537 -13.98193 -13.66754 -13.50879 -13.07173 -12.88317 -12.87509 -12.44621 -12.32931 -12.25765 -12.18183 -11.38322 -11.10903 -10.79098 -10.60212 -10.59383 -10.33671 -10.26619 -10.20392 -10.06263 -9.95353 -9.65522 -9.51024 -9.15202 -8.62282 -8.55258 -6.77159 -5.88423 -3.31632 1.14835 2.67253 2.69574 3.11942 3.23405 3.28769 3.36603 3.37762 4.26644 4.38961 4.65725 4.86582 5.01400 5.08066 5.20292 5.34272 5.36651 5.50969 5.54526 5.70946 5.74696 5.81110 5.85238 5.91086 5.96300 6.13870 6.22437 6.27891 6.35077 6.43689 6.49103 6.61545 6.67392 6.77430 6.85832 6.97749 7.31590 7.37159 7.58902 7.68345 7.72831 8.08609 8.34591 9.10820 9.74452 10.31303 11.19677 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.003823 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.047618 B = 7321.798805 C = 8624.024056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.094 3.906 3 N -0.502 5.502 4 C 0.219 3.781 5 N -0.554 5.554 6 H 0.425 0.575 7 C -0.092 4.092 8 C 0.593 3.407 9 O -0.528 6.528 10 N -0.722 5.722 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.072 0.928 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.154 3.846 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.216 0.784 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.255 0.745 41 H 0.020 0.980 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 10.974 -7.157 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 N -0.222 5.222 4 C -0.065 4.065 5 N -0.159 5.159 6 H 0.264 0.736 7 C -0.207 4.207 8 C 0.379 3.621 9 O -0.404 6.404 10 N -0.373 5.373 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.180 4.180 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.027 3.973 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.232 0.768 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.558 11.397 -7.052 15.902 hybrid contribution 2.441 -0.811 0.066 2.573 sum -6.117 10.586 -6.986 14.081 Atomic orbital electron populations 1.20290 0.86535 1.03566 1.03061 1.21074 0.96914 0.86643 0.99415 1.70142 1.00489 1.30481 1.21092 1.25151 0.97408 0.82110 1.01807 1.43382 1.08161 1.08891 1.55459 0.73617 1.21000 0.84354 0.95233 1.20145 1.16823 0.85940 0.82571 0.76776 1.90807 1.16028 1.82951 1.50645 1.45974 1.09313 1.06944 1.75050 1.21519 0.97437 0.78472 1.02116 1.22049 0.95283 0.94902 1.01665 0.90920 1.21338 0.98012 0.93898 1.00518 1.22165 0.96738 0.97416 1.01730 1.20804 0.98600 0.85558 0.90754 1.44050 1.02500 1.01955 1.82865 1.19117 0.85713 1.00145 1.33729 0.91882 1.25041 0.98620 0.98622 0.97178 1.70033 1.33089 1.15945 1.35274 0.86313 0.85467 0.77313 0.77836 1.21434 1.21461 1.20467 1.20974 0.90264 0.93518 0.92506 0.90758 0.91180 0.89265 0.76794 0.76980 0.91624 0.91207 0.93340 0.92374 0.92764 0.93089 0.89532 0.96392 0.93532 0.96218 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.88 36.01 0.36 -0.53 16 2 C 0.09 1.23 7.15 -82.52 -0.59 0.64 16 3 N -0.50 -6.21 11.20 -10.64 -0.12 -6.33 16 4 C 0.22 1.96 13.01 -90.57 -1.18 0.78 16 5 N -0.55 -5.01 6.07 -10.79 -0.07 -5.07 16 6 H 0.42 2.68 8.32 -40.82 -0.34 2.34 16 7 C -0.09 -1.14 7.07 -82.14 -0.58 -1.72 16 8 C 0.59 8.25 7.79 -12.81 -0.10 8.15 16 9 O -0.53 -8.71 14.82 5.20 0.08 -8.64 16 10 N -0.72 -9.09 5.33 -61.60 -0.33 -9.42 16 11 C 0.13 1.75 5.07 -4.05 -0.02 1.73 16 12 C -0.12 -1.82 2.38 -90.27 -0.22 -2.04 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.10 -1.55 5.16 -26.69 -0.14 -1.69 16 15 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 16 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 17 N -0.59 -13.96 2.99 -172.06 -0.51 -14.47 16 18 C -0.26 -6.69 9.58 -15.06 -0.14 -6.84 16 19 H 0.06 1.58 7.89 -52.49 -0.41 1.16 16 20 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 21 N -0.90 -25.34 11.19 55.49 0.62 -24.72 16 22 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.15 2.95 5.63 -3.48 -0.02 2.93 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.10 6.48 -51.93 -0.34 0.77 16 30 H 0.22 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.40 4.32 6.96 -40.82 -0.28 4.03 16 32 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.84 7.16 -51.93 -0.37 0.47 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -32.32 340.31 -9.40 -41.71 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.27 Total: 3.51 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.90 Total: 2.56 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.41 Total: -60.02 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.32 -9.40 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.489 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds