Wall clock time and date at job start Tue Mar 31 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33318 * 126.10592 * 2 1 4 4 C 1.30859 * 109.68252 * 180.02562 * 3 2 1 5 5 N 1.34496 * 109.16679 * 359.76657 * 4 3 2 6 6 H 0.96994 * 126.47211 * 180.24940 * 5 4 3 7 7 C 1.36658 * 126.10886 * 180.02562 * 2 1 3 8 8 C 1.46767 * 126.84096 * 359.95277 * 7 2 1 9 9 O 1.21684 * 120.00483 * 0.02562 * 8 7 2 10 10 N 1.34782 * 120.00199 * 180.02562 * 8 7 2 11 11 C 1.46489 * 120.00456 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47409 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.49899 * 305.06585 * 12 11 10 14 14 C 1.53039 * 109.49938 * 184.99872 * 12 11 10 15 15 C 1.53045 * 109.53823 * 178.65416 * 14 12 11 16 16 C 1.53190 * 109.31268 * 61.36420 * 15 14 12 17 17 N 1.46922 * 108.77625 * 305.36643 * 16 15 14 18 18 C 1.36943 * 120.63253 * 233.58592 * 17 16 15 19 19 H 1.07990 * 120.00256 * 152.29272 * 18 17 16 20 20 C 1.38815 * 119.99581 * 332.29987 * 18 17 16 21 21 N 1.31620 * 120.00321 * 342.60833 * 20 18 17 22 22 Si 1.86797 * 120.00011 * 162.60927 * 20 18 17 23 23 H 1.48498 * 109.47121 * 94.34418 * 22 20 18 24 24 H 1.48494 * 109.47249 * 214.34635 * 22 20 18 25 25 H 1.48498 * 109.46937 * 334.34891 * 22 20 18 26 26 C 1.46922 * 118.73992 * 53.86210 * 17 16 15 27 27 H 1.09005 * 109.46513 * 269.99749 * 1 2 3 28 28 H 1.09005 * 109.47200 * 29.99647 * 1 2 3 29 29 H 1.08999 * 109.47205 * 149.99774 * 1 2 3 30 30 H 1.08004 * 125.41449 * 180.02562 * 4 3 2 31 31 H 0.97004 * 119.99274 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.47213 * 60.00004 * 11 10 8 33 33 H 1.08999 * 109.47142 * 300.00334 * 11 10 8 34 34 H 1.08998 * 109.45900 * 58.63499 * 14 12 11 35 35 H 1.08997 * 109.45267 * 298.66396 * 14 12 11 36 36 H 1.09000 * 109.49357 * 301.41438 * 15 14 12 37 37 H 1.09006 * 109.52292 * 181.33825 * 15 14 12 38 38 H 1.09003 * 109.58516 * 185.58004 * 16 15 14 39 39 H 1.09000 * 109.70365 * 65.22328 * 16 15 14 40 40 H 0.96992 * 120.00549 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.58771 * 65.92198 * 26 17 16 42 42 H 1.08998 * 109.58854 * 186.35641 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6122 -0.6363 0.0042 6 1 4.4189 -1.1748 0.0084 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5072 -0.0002 9 8 0.6962 -2.7800 0.0002 10 7 2.8004 -3.4938 -0.0002 11 6 2.3709 -4.8943 -0.0004 12 6 3.6005 -5.8048 -0.0011 13 1 4.2439 -5.5468 -0.8422 14 6 3.1557 -7.2637 -0.1270 15 6 4.3863 -8.1729 -0.1615 16 6 5.1682 -8.0170 1.1465 17 7 5.4745 -6.5942 1.3477 18 6 6.7617 -6.1819 1.5677 19 1 7.0668 -5.1870 1.2792 20 6 7.6744 -7.0430 2.1616 21 7 7.2495 -8.1022 2.8171 22 14 9.5056 -6.6984 2.0303 23 1 9.9544 -5.9438 3.2279 24 1 10.2463 -7.9827 1.9481 25 1 9.7717 -5.8945 0.8104 26 6 4.3728 -5.6228 1.3145 27 1 -0.3632 0.0000 1.0278 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 4.3970 1.3745 -0.0003 31 1 3.7457 -3.2763 -0.0001 32 1 1.7732 -5.0910 -0.8906 33 1 1.7730 -5.0911 0.8894 34 1 2.5843 -7.3911 -1.0464 35 1 2.5327 -7.5283 0.7273 36 1 5.0223 -7.8925 -1.0012 37 1 4.0701 -9.2099 -0.2751 38 1 6.0962 -8.5858 1.0875 39 1 4.5678 -8.3828 1.9794 40 1 7.8871 -8.7037 3.2324 41 1 3.7066 -5.7968 2.1595 42 1 4.7757 -4.6114 1.3662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896632294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:28 Heat of formation + Delta-G solvation = 5.708486 kcal Electronic energy + Delta-G solvation = -23409.462215 eV Core-core repulsion = 20003.420633 eV Total energy + Delta-G solvation = -3406.041582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.20807 -40.56544 -39.27419 -36.37746 -34.87338 -34.08972 -32.45257 -32.29573 -31.62126 -28.46860 -27.26668 -26.66285 -24.10086 -23.72883 -22.72329 -21.94568 -21.08262 -20.51956 -19.67723 -18.64775 -17.17549 -17.02054 -16.87668 -16.74702 -16.12548 -15.69435 -15.42743 -15.21147 -15.04825 -14.94622 -14.52508 -14.03135 -13.92282 -13.78258 -13.72465 -13.58409 -13.08822 -13.02005 -12.89575 -12.51195 -12.27957 -11.98955 -11.84485 -11.62280 -11.54532 -11.33269 -11.11408 -11.02627 -10.89782 -10.54020 -10.23984 -9.50497 -8.69180 -7.87731 -5.33519 0.25168 1.46046 1.48540 1.57402 1.84547 1.89975 2.16042 2.23711 2.50294 3.27585 3.54345 3.57375 3.80717 3.96464 3.99058 4.02838 4.14282 4.29295 4.40226 4.54448 4.59823 4.71333 4.74930 4.82244 4.86076 4.88611 4.97583 4.98952 5.05622 5.09743 5.19990 5.30994 5.35070 5.43529 5.55501 5.56130 5.65879 5.77881 6.29341 6.37591 6.41670 6.90947 7.05186 7.13751 7.85284 8.37516 9.18524 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.003823 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.047618 B = 7321.798805 C = 8624.024056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 N -0.535 5.535 4 C 0.240 3.760 5 N -0.543 5.543 6 H 0.438 0.562 7 C -0.111 4.111 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.715 5.715 11 C 0.138 3.862 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.152 3.848 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.262 0.738 31 H 0.406 0.594 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.051 0.949 39 H -0.009 1.009 40 H 0.249 0.751 41 H 0.005 0.995 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 12.616 -8.664 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 N -0.256 5.256 4 C -0.044 4.044 5 N -0.149 5.149 6 H 0.280 0.720 7 C -0.227 4.227 8 C 0.381 3.619 9 O -0.439 6.439 10 N -0.366 5.366 11 C 0.014 3.986 12 C -0.120 4.120 13 H 0.097 0.903 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.091 0.909 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.026 3.974 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.278 0.722 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.009 0.991 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.002 13.052 -8.580 17.550 hybrid contribution 2.272 -1.254 0.570 2.657 sum -5.730 11.798 -8.010 15.368 Atomic orbital electron populations 1.20256 0.86434 1.03460 1.03084 1.21339 0.97565 0.87273 0.99511 1.70152 1.01926 1.30661 1.22850 1.26086 0.97639 0.82344 0.98364 1.43331 1.07559 1.09185 1.54837 0.71999 1.20752 0.85808 0.94289 1.21880 1.16991 0.85560 0.83256 0.76120 1.90788 1.17324 1.83542 1.52199 1.45854 1.09719 1.06356 1.74646 1.21335 0.96353 0.78619 1.02251 1.21800 0.95460 0.95437 0.99310 0.90325 1.21340 0.96994 0.93140 1.02100 1.21991 0.97116 0.99313 0.98432 1.20634 0.97155 0.85082 0.92489 1.44325 1.03039 1.02809 1.83035 1.19553 0.86932 1.00366 1.32386 0.90894 1.25809 1.02582 0.98828 0.97514 1.70198 1.34005 1.17163 1.36904 0.85297 0.80553 0.76720 0.78078 1.21454 1.22317 1.18944 1.21117 0.89189 0.92994 0.94069 0.90663 0.90147 0.90415 0.72248 0.75880 0.90477 0.92151 0.90046 0.92658 0.92738 0.91334 0.93057 0.99079 0.94230 0.97722 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 9.88 71.24 0.70 -1.01 16 2 C 0.08 1.95 7.15 41.96 0.30 2.25 16 3 N -0.54 -12.22 11.20 -187.59 -2.10 -14.32 16 4 C 0.24 3.52 13.01 180.33 2.35 5.86 16 5 N -0.54 -8.37 6.07 -188.04 -1.14 -9.51 16 6 H 0.44 4.16 8.32 -92.71 -0.77 3.39 16 7 C -0.11 -2.61 7.07 40.01 0.28 -2.32 16 8 C 0.59 15.84 7.79 86.47 0.67 16.51 16 9 O -0.56 -18.24 14.82 -4.30 -0.06 -18.30 16 10 N -0.71 -16.63 5.33 -467.01 -2.49 -19.12 16 11 C 0.14 3.49 5.07 86.38 0.44 3.93 16 12 C -0.10 -2.85 2.38 -10.57 -0.03 -2.88 16 13 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.10 -2.82 5.16 30.62 0.16 -2.66 16 15 C -0.13 -4.50 6.08 30.67 0.19 -4.31 16 16 C 0.17 8.01 5.31 86.36 0.46 8.47 16 17 N -0.61 -28.73 2.99 -698.26 -2.09 -30.82 16 18 C -0.26 -13.55 9.58 84.03 0.81 -12.75 16 19 H 0.07 3.55 7.89 -2.92 -0.02 3.52 16 20 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 21 N -0.94 -54.33 11.19 21.65 0.24 -54.09 16 22 Si 0.97 42.87 29.59 68.60 2.03 44.90 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 C 0.15 5.66 5.63 86.51 0.49 6.15 16 27 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.08 1.95 6.48 -2.39 -0.02 1.93 16 30 H 0.26 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.41 7.85 6.96 -92.71 -0.65 7.21 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.05 2.74 6.04 -2.39 -0.01 2.72 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 42 H 0.06 1.97 7.16 -2.39 -0.02 1.95 16 Total: -1.00 -71.56 340.31 1.25 -70.31 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.37 Total: 16.09 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.23 Total: 14.85 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -7.58 Total: -127.85 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.56 1.25 -70.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896632294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.023 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds