Wall clock time and date at job start Tue Mar 31 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.52994 * 109.47593 * 199.94092 * 3 2 1 5 5 O 1.42904 * 109.47181 * 63.68540 * 4 3 2 6 6 C 1.46904 * 111.00250 * 123.94838 * 2 1 3 7 7 C 1.53000 * 109.46807 * 66.04669 * 6 2 1 8 8 N 1.46497 * 109.47307 * 179.97438 * 7 6 2 9 9 C 1.34775 * 120.00646 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.47633 * 120.00574 * 180.02562 * 9 8 7 12 12 C 1.40020 * 119.89556 * 0.25220 * 11 9 8 13 13 C 1.36321 * 120.10610 * 180.25395 * 12 11 9 14 14 C 1.40886 * 119.89186 * 359.47965 * 13 12 11 15 15 C 1.41107 * 120.10029 * 180.29622 * 14 13 12 16 16 H 1.08006 * 119.99545 * 153.27367 * 15 14 13 17 17 C 1.40218 * 120.00392 * 333.27783 * 15 14 13 18 18 N 1.30651 * 119.99924 * 346.49151 * 17 15 14 19 19 Si 1.86804 * 120.00402 * 166.49620 * 17 15 14 20 20 H 1.48504 * 109.46898 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47274 * 119.99543 * 19 17 15 22 22 H 1.48495 * 109.46985 * 240.00141 * 19 17 15 23 23 C 1.40894 * 119.79249 * 0.27135 * 14 13 12 24 24 C 1.36309 * 119.89350 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47430 * 290.02271 * 1 2 3 26 26 H 1.08996 * 109.46848 * 50.03324 * 1 2 3 27 27 H 1.09005 * 109.46310 * 170.02772 * 1 2 3 28 28 H 1.09002 * 109.46387 * 319.94296 * 3 2 1 29 29 H 1.09002 * 109.47244 * 79.93763 * 3 2 1 30 30 H 1.09005 * 109.47430 * 183.68312 * 4 3 2 31 31 H 1.09002 * 109.47024 * 303.68642 * 4 3 2 32 32 H 0.96701 * 114.00260 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47178 * 306.05518 * 6 2 1 34 34 H 1.08999 * 109.47294 * 186.04595 * 6 2 1 35 35 H 1.09002 * 109.47272 * 60.00436 * 7 6 2 36 36 H 1.08997 * 109.47598 * 300.00631 * 7 6 2 37 37 H 0.97001 * 119.99756 * 0.02562 * 8 7 6 38 38 H 1.07995 * 119.94487 * 0.03011 * 12 11 9 39 39 H 1.07997 * 120.04916 * 179.74589 * 13 12 11 40 40 H 0.96995 * 119.99858 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.04564 * 180.02562 * 23 14 13 42 42 H 1.07999 * 119.94665 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4441 1.3616 -0.4919 5 8 3.4836 0.9135 -1.8483 6 6 1.9955 -0.7659 1.1377 7 6 1.6315 -2.2425 0.9705 8 7 2.1570 -3.0065 2.1047 9 6 1.9558 -4.3374 2.1720 10 8 1.3385 -4.9042 1.2910 11 6 2.4850 -5.1072 3.3152 12 6 3.1910 -4.4515 4.3311 13 6 3.6860 -5.1589 5.3861 14 6 3.4766 -6.5502 5.4588 15 6 3.9816 -7.2857 6.5520 16 1 3.4990 -8.2034 6.8544 17 6 5.1097 -6.8252 7.2457 18 7 5.8482 -5.8760 6.7351 19 14 5.5570 -7.5689 8.9000 20 1 4.5680 -8.6183 9.2546 21 1 6.9121 -8.1713 8.8217 22 1 5.5461 -6.5079 9.9388 23 6 2.7610 -7.2047 4.4367 24 6 2.2751 -6.4899 3.3826 25 1 -0.3634 0.3518 0.9655 26 1 -0.3633 0.6601 -0.7876 27 1 -0.3632 -1.0122 -0.1780 28 1 1.3913 1.9924 -0.6614 29 1 1.9581 1.7750 1.0119 30 1 3.8557 2.3691 -0.4301 31 1 4.0346 0.6891 0.1303 32 1 4.3731 0.8817 -2.2263 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 2.0659 -2.6214 0.0453 36 1 0.5473 -2.3475 0.9324 37 1 2.6492 -2.5543 2.8076 38 1 3.3469 -3.3842 4.2770 39 1 4.2340 -4.6528 6.1671 40 1 6.6288 -5.5577 7.2149 41 1 2.5977 -8.2711 4.4884 42 1 1.7268 -6.9908 2.5985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899736318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:00 Heat of formation + Delta-G solvation = -67.636290 kcal Electronic energy + Delta-G solvation = -22401.857556 eV Core-core repulsion = 18960.342755 eV Total energy + Delta-G solvation = -3441.514801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.21665 -38.33637 -37.10944 -36.30503 -34.11251 -33.84768 -30.69006 -29.85536 -29.44606 -28.66121 -26.07018 -24.99951 -22.90769 -21.67578 -21.04122 -20.77169 -19.52932 -17.67332 -17.52788 -16.83941 -16.30280 -15.86053 -15.41811 -15.22598 -14.69962 -14.40741 -14.03359 -13.87835 -13.68041 -13.24353 -13.15125 -13.01812 -12.71034 -12.54675 -12.11758 -11.95328 -11.89373 -11.53462 -11.49067 -11.36945 -11.26265 -10.94905 -10.90171 -10.63081 -10.16725 -10.01740 -9.56174 -9.39910 -8.97367 -8.56805 -8.51868 -7.72445 -7.51439 -6.99977 -4.61322 2.22551 2.90888 2.94902 3.00418 3.02916 3.39734 3.74562 3.89037 4.06334 4.12428 4.58447 4.74943 4.82442 4.92534 5.03743 5.11686 5.21661 5.37848 5.40865 5.44598 5.56390 5.56428 5.75395 5.89131 6.01712 6.03202 6.22139 6.32075 6.76183 6.78586 6.81069 6.83586 6.96744 7.07051 7.13612 7.44139 7.48795 7.64652 7.79109 7.86186 8.07523 8.24262 8.40658 8.63758 8.75013 9.08910 9.91458 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.002763 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.907271 B =10131.675557 C =10868.399350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.529 5.529 3 C 0.054 3.946 4 C 0.080 3.920 5 O -0.559 6.559 6 C 0.043 3.957 7 C 0.128 3.872 8 N -0.743 5.743 9 C 0.572 3.428 10 O -0.574 6.574 11 C -0.280 4.280 12 C -0.065 4.065 13 C -0.175 4.175 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.084 0.916 17 C 0.072 3.928 18 N -0.778 5.778 19 Si 0.915 3.085 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.237 4.237 24 C -0.024 4.024 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.374 0.626 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.285 0.715 41 H 0.099 0.901 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 14.314 -5.867 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.254 5.254 3 C -0.074 4.074 4 C 0.002 3.998 5 O -0.363 6.363 6 C -0.086 4.086 7 C 0.004 3.996 8 N -0.396 5.396 9 C 0.367 3.633 10 O -0.455 6.455 11 C -0.285 4.285 12 C -0.084 4.084 13 C -0.194 4.194 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.102 0.898 17 C -0.148 4.148 18 N -0.402 5.402 19 Si 0.738 3.262 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.256 4.256 24 C -0.043 4.043 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.539 13.799 -6.799 15.591 hybrid contribution 0.995 0.506 1.774 2.096 sum -1.543 14.305 -5.025 15.240 Atomic orbital electron populations 1.22488 0.86931 1.03134 1.00120 1.61787 1.08014 1.12945 1.42618 1.22176 0.95661 0.89933 0.99644 1.22183 0.96441 0.97348 0.83835 1.86591 1.33186 1.89968 1.26582 1.22359 1.00769 0.93872 0.91563 1.21069 0.99045 0.89124 0.90369 1.45833 1.59698 1.08556 1.25553 1.18564 0.78165 0.80674 0.85935 1.90641 1.43493 1.69970 1.41432 1.18932 1.15927 0.94409 0.99227 1.20486 0.96564 0.96927 0.94416 1.21030 1.04723 0.94192 0.99462 1.17811 0.87478 0.91898 0.90341 1.19869 1.09205 1.07617 1.10444 0.89754 1.26086 0.95449 0.94059 0.99188 1.69733 1.11852 1.22084 1.36521 0.86142 0.79231 0.80003 0.80775 1.18128 1.19681 1.19475 1.20755 1.09883 0.98205 0.96770 1.20372 0.95187 0.92417 0.96303 0.95563 0.91362 0.90667 0.90034 0.93161 0.93583 0.93544 0.77994 0.94242 0.90256 0.91130 0.92101 0.76965 0.89370 0.85963 0.90400 0.88330 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.22 60.06 0.55 0.77 16 2 N -0.53 -5.87 4.62 -242.92 -1.12 -6.99 16 3 C 0.05 0.48 5.39 -3.83 -0.02 0.46 16 4 C 0.08 0.68 7.23 37.15 0.27 0.94 16 5 O -0.56 -5.61 13.59 -35.23 -0.48 -6.09 16 6 C 0.04 0.49 4.90 -3.82 -0.02 0.47 16 7 C 0.13 1.91 5.60 -4.04 -0.02 1.89 16 8 N -0.74 -12.64 5.50 -61.32 -0.34 -12.97 16 9 C 0.57 12.41 7.76 -12.43 -0.10 12.31 16 10 O -0.57 -14.03 16.32 5.28 0.09 -13.95 16 11 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 12 C -0.06 -1.43 9.47 -39.60 -0.38 -1.80 16 13 C -0.17 -4.27 8.61 -39.27 -0.34 -4.60 16 14 C 0.13 3.26 5.57 -106.80 -0.59 2.66 16 15 C -0.44 -11.03 9.06 -37.75 -0.34 -11.37 16 16 H 0.08 2.01 7.89 -52.48 -0.41 1.60 16 17 C 0.07 1.69 5.21 -17.31 -0.09 1.60 16 18 N -0.78 -18.60 10.84 55.56 0.60 -18.00 16 19 Si 0.91 17.29 29.58 -169.99 -5.03 12.26 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.24 -5.75 9.73 -39.27 -0.38 -6.14 16 24 C -0.02 -0.56 9.52 -39.61 -0.38 -0.94 16 25 H 0.03 0.24 8.06 -51.93 -0.42 -0.18 16 26 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 27 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 28 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 29 H 0.05 0.38 8.00 -51.93 -0.42 -0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.40 6.70 -51.93 -0.35 0.05 16 32 H 0.37 2.15 9.12 45.56 0.42 2.57 16 33 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.08 0.86 6.60 -51.93 -0.34 0.52 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.94 6.69 -51.93 -0.35 0.59 16 37 H 0.40 5.90 6.47 -40.82 -0.26 5.64 16 38 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 39 H 0.12 3.02 6.15 -52.49 -0.32 2.70 16 40 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -30.55 347.64 -8.66 -39.21 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.17 Total: 12.12 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.45 Total: -10.83 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.86 Total: -37.96 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.39 Total: -20.04 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.55 -8.66 -39.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899736318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.423 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds