Wall clock time and date at job start Tue Mar 31 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00257 * 2 1 4 4 C 1.52994 * 109.47593 * 199.94092 * 3 2 1 5 5 O 1.42904 * 109.47181 * 63.68540 * 4 3 2 6 6 C 1.46904 * 111.00250 * 123.94838 * 2 1 3 7 7 C 1.53000 * 109.46807 * 66.04669 * 6 2 1 8 8 N 1.46497 * 109.47307 * 179.97438 * 7 6 2 9 9 C 1.34775 * 120.00646 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.47633 * 120.00574 * 180.02562 * 9 8 7 12 12 C 1.40020 * 119.89556 * 0.25220 * 11 9 8 13 13 C 1.36321 * 120.10610 * 180.25395 * 12 11 9 14 14 C 1.40886 * 119.89186 * 359.47965 * 13 12 11 15 15 C 1.41107 * 120.10029 * 180.29622 * 14 13 12 16 16 H 1.08006 * 119.99545 * 153.27367 * 15 14 13 17 17 C 1.40218 * 120.00392 * 333.27783 * 15 14 13 18 18 N 1.30651 * 119.99924 * 346.49151 * 17 15 14 19 19 Si 1.86804 * 120.00402 * 166.49620 * 17 15 14 20 20 H 1.48504 * 109.46898 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47274 * 119.99543 * 19 17 15 22 22 H 1.48495 * 109.46985 * 240.00141 * 19 17 15 23 23 C 1.40894 * 119.79249 * 0.27135 * 14 13 12 24 24 C 1.36309 * 119.89350 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47430 * 290.02271 * 1 2 3 26 26 H 1.08996 * 109.46848 * 50.03324 * 1 2 3 27 27 H 1.09005 * 109.46310 * 170.02772 * 1 2 3 28 28 H 1.09002 * 109.46387 * 319.94296 * 3 2 1 29 29 H 1.09002 * 109.47244 * 79.93763 * 3 2 1 30 30 H 1.09005 * 109.47430 * 183.68312 * 4 3 2 31 31 H 1.09002 * 109.47024 * 303.68642 * 4 3 2 32 32 H 0.96701 * 114.00260 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47178 * 306.05518 * 6 2 1 34 34 H 1.08999 * 109.47294 * 186.04595 * 6 2 1 35 35 H 1.09002 * 109.47272 * 60.00436 * 7 6 2 36 36 H 1.08997 * 109.47598 * 300.00631 * 7 6 2 37 37 H 0.97001 * 119.99756 * 0.02562 * 8 7 6 38 38 H 1.07995 * 119.94487 * 0.03011 * 12 11 9 39 39 H 1.07997 * 120.04916 * 179.74589 * 13 12 11 40 40 H 0.96995 * 119.99858 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.04564 * 180.02562 * 23 14 13 42 42 H 1.07999 * 119.94665 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4441 1.3616 -0.4919 5 8 3.4836 0.9135 -1.8483 6 6 1.9955 -0.7659 1.1377 7 6 1.6315 -2.2425 0.9705 8 7 2.1570 -3.0065 2.1047 9 6 1.9558 -4.3374 2.1720 10 8 1.3385 -4.9042 1.2910 11 6 2.4850 -5.1072 3.3152 12 6 3.1910 -4.4515 4.3311 13 6 3.6860 -5.1589 5.3861 14 6 3.4766 -6.5502 5.4588 15 6 3.9816 -7.2857 6.5520 16 1 3.4990 -8.2034 6.8544 17 6 5.1097 -6.8252 7.2457 18 7 5.8482 -5.8760 6.7351 19 14 5.5570 -7.5689 8.9000 20 1 4.5680 -8.6183 9.2546 21 1 6.9121 -8.1713 8.8217 22 1 5.5461 -6.5079 9.9388 23 6 2.7610 -7.2047 4.4367 24 6 2.2751 -6.4899 3.3826 25 1 -0.3634 0.3518 0.9655 26 1 -0.3633 0.6601 -0.7876 27 1 -0.3632 -1.0122 -0.1780 28 1 1.3913 1.9924 -0.6614 29 1 1.9581 1.7750 1.0119 30 1 3.8557 2.3691 -0.4301 31 1 4.0346 0.6891 0.1303 32 1 4.3731 0.8817 -2.2263 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6610 1.1757 35 1 2.0659 -2.6214 0.0453 36 1 0.5473 -2.3475 0.9324 37 1 2.6492 -2.5543 2.8076 38 1 3.3469 -3.3842 4.2770 39 1 4.2340 -4.6528 6.1671 40 1 6.6288 -5.5577 7.2149 41 1 2.5977 -8.2711 4.4884 42 1 1.7268 -6.9908 2.5985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899736318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:59 Heat of formation + Delta-G solvation = -90.490918 kcal Electronic energy + Delta-G solvation = -22402.848607 eV Core-core repulsion = 18960.342755 eV Total energy + Delta-G solvation = -3442.505852 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83025 -39.32670 -38.78829 -37.13010 -35.65584 -35.52301 -32.29687 -31.30705 -30.85375 -29.74973 -27.69299 -26.04585 -24.07642 -23.21521 -22.68619 -21.85694 -21.11134 -19.36354 -18.55465 -18.22589 -17.44512 -17.13888 -16.86054 -16.26530 -15.95035 -15.74687 -15.61812 -15.17778 -14.96329 -14.68594 -14.43858 -14.28774 -13.93476 -13.78178 -13.63486 -13.28813 -13.23866 -12.87622 -12.84309 -12.62684 -12.44057 -12.38787 -12.34606 -11.74423 -11.69544 -11.36688 -11.15907 -10.82406 -10.73535 -10.08806 -9.57401 -9.37685 -9.30305 -8.75561 -6.49084 0.42813 1.14763 1.39818 1.42433 1.55800 2.12457 2.18639 2.21250 2.79782 3.08344 3.50024 3.68678 3.80672 3.99475 4.16603 4.25093 4.30751 4.33015 4.37178 4.44673 4.53796 4.56098 4.66587 4.73656 4.88068 4.91110 4.92505 4.95414 5.03898 5.05156 5.16016 5.30432 5.51255 5.59940 5.81688 5.94545 5.99820 6.02351 6.06294 6.23336 6.54941 6.69360 6.78264 6.89018 7.00679 7.42338 8.19034 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.002763 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.907271 B =10131.675557 C =10868.399350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.051 3.949 4 C 0.077 3.923 5 O -0.586 6.586 6 C 0.054 3.946 7 C 0.132 3.868 8 N -0.723 5.723 9 C 0.571 3.429 10 O -0.607 6.607 11 C -0.290 4.290 12 C -0.054 4.054 13 C -0.194 4.194 14 C 0.101 3.899 15 C -0.474 4.474 16 H 0.084 0.916 17 C 0.036 3.964 18 N -0.803 5.803 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.251 4.251 24 C -0.035 4.035 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.390 0.610 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.409 0.591 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.296 0.704 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 16.160 -4.941 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.076 4.076 4 C -0.001 4.001 5 O -0.393 6.393 6 C -0.074 4.074 7 C 0.008 3.992 8 N -0.376 5.376 9 C 0.365 3.635 10 O -0.491 6.491 11 C -0.295 4.295 12 C -0.073 4.073 13 C -0.213 4.213 14 C 0.098 3.902 15 C -0.501 4.501 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.427 5.427 19 Si 0.809 3.191 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.271 4.271 24 C -0.054 4.054 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.238 0.762 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.797 15.698 -5.886 16.861 hybrid contribution 0.768 -0.009 1.384 1.583 sum -1.029 15.689 -4.502 16.354 Atomic orbital electron populations 1.22481 0.86557 1.02558 1.01041 1.61758 1.08583 1.14419 1.42498 1.22288 0.95961 0.88623 1.00766 1.22296 0.96177 0.98550 0.83062 1.86539 1.34955 1.90250 1.27528 1.22210 1.01424 0.91316 0.92466 1.21129 0.98407 0.91136 0.88577 1.45639 1.58544 1.07141 1.26252 1.18422 0.77931 0.82055 0.85134 1.90623 1.45040 1.71045 1.42410 1.19191 1.15866 0.94419 1.00006 1.20749 0.94868 0.98686 0.92974 1.21073 1.05839 0.94031 1.00362 1.18165 0.88191 0.92843 0.91010 1.20127 1.10406 1.08191 1.11395 0.89808 1.26909 0.94629 0.94304 1.02378 1.69748 1.12280 1.22693 1.37941 0.85041 0.78895 0.79218 0.75941 1.18185 1.18934 1.18409 1.20890 1.10449 0.98694 0.97037 1.20513 0.95385 0.93266 0.96231 0.94621 0.90337 0.92135 0.89763 0.91448 0.91259 0.93763 0.76195 0.92827 0.89371 0.93013 0.92700 0.75439 0.85613 0.86472 0.89279 0.87774 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.22 127.69 1.18 1.57 16 2 N -0.55 -11.12 4.62 -922.47 -4.26 -15.38 16 3 C 0.05 0.78 5.39 86.30 0.47 1.25 16 4 C 0.08 1.12 7.23 71.98 0.52 1.64 16 5 O -0.59 -10.84 13.59 -148.98 -2.02 -12.86 16 6 C 0.05 1.12 4.90 86.30 0.42 1.54 16 7 C 0.13 3.77 5.60 86.38 0.48 4.25 16 8 N -0.72 -23.52 5.50 -466.17 -2.57 -26.08 16 9 C 0.57 24.52 7.76 86.72 0.67 25.19 16 10 O -0.61 -29.91 16.32 -4.01 -0.07 -29.97 16 11 C -0.29 -13.32 5.89 -19.93 -0.12 -13.43 16 12 C -0.05 -2.33 9.47 22.25 0.21 -2.12 16 13 C -0.19 -9.48 8.61 22.47 0.19 -9.28 16 14 C 0.10 5.24 5.57 -21.28 -0.12 5.13 16 15 C -0.47 -23.88 9.06 23.46 0.21 -23.67 16 16 H 0.08 4.07 7.89 -2.91 -0.02 4.05 16 17 C 0.04 1.66 5.21 85.35 0.44 2.10 16 18 N -0.80 -38.01 10.84 21.87 0.24 -37.77 16 19 Si 0.99 34.66 29.58 68.60 2.03 36.68 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 23 C -0.25 -12.54 9.73 22.47 0.22 -12.32 16 24 C -0.03 -1.69 9.52 22.25 0.21 -1.47 16 25 H 0.04 0.58 8.06 -2.39 -0.02 0.56 16 26 H 0.08 1.26 7.83 -2.39 -0.02 1.24 16 27 H 0.06 1.27 6.77 -2.38 -0.02 1.26 16 28 H 0.08 1.25 7.73 -2.39 -0.02 1.23 16 29 H 0.07 0.81 8.00 -2.39 -0.02 0.79 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.04 0.65 6.70 -2.39 -0.02 0.63 16 32 H 0.39 3.94 9.12 -74.06 -0.68 3.27 16 33 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.09 1.68 6.60 -2.39 -0.02 1.67 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.66 6.69 -2.39 -0.02 1.65 16 37 H 0.41 11.13 6.47 -92.71 -0.60 10.53 16 38 H 0.13 4.34 6.37 -2.91 -0.02 4.33 16 39 H 0.12 5.79 6.15 -2.91 -0.02 5.77 16 40 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 41 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.10 4.83 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -66.01 347.64 -1.88 -67.89 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.23 Total: 37.12 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.00 Total: -19.63 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -6.59 Total: -79.23 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.09 Total: -42.83 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.68 kcal Total: -66.01 -1.88 -67.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899736318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.602 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds