Wall clock time and date at job start Tue Mar 31 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46972 * 240.00033 * 3 2 1 5 5 H 1.48495 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99816 * 3 2 1 7 7 C 1.37878 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99568 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00499 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99496 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.46850 * 110.99813 * 293.95378 * 14 13 11 16 16 C 1.53033 * 109.52490 * 174.15761 * 15 14 13 17 17 C 1.53119 * 109.27787 * 59.17980 * 16 15 14 18 18 C 1.53126 * 109.16048 * 302.34386 * 17 16 15 19 19 H 1.09006 * 109.50177 * 297.71578 * 18 17 16 20 20 C 1.50701 * 109.50316 * 177.59710 * 18 17 16 21 21 C 1.39869 * 125.89773 * 324.99695 * 20 18 17 22 22 C 1.35316 * 107.91764 * 180.02562 * 21 20 18 23 23 N 1.34954 * 107.74599 * 0.02562 * 22 21 20 24 24 H 0.96999 * 126.03585 * 179.97438 * 23 22 21 25 25 N 1.30837 * 125.89739 * 144.69472 * 20 18 17 26 26 C 1.46845 * 111.00565 * 169.74312 * 14 13 11 27 27 H 0.96997 * 120.00422 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46790 * 59.99714 * 9 7 2 29 29 H 1.09003 * 109.46665 * 300.00223 * 9 7 2 30 30 H 0.96993 * 119.99669 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.47270 * 59.99824 * 13 11 10 32 32 H 1.09003 * 109.47247 * 299.99768 * 13 11 10 33 33 H 1.09005 * 109.46186 * 54.13967 * 15 14 13 34 34 H 1.09004 * 109.45360 * 294.17122 * 15 14 13 35 35 H 1.09004 * 109.50318 * 299.23790 * 16 15 14 36 36 H 1.08999 * 109.53400 * 179.13825 * 16 15 14 37 37 H 1.08999 * 109.52185 * 182.44278 * 17 16 15 38 38 H 1.08993 * 109.52436 * 62.24928 * 17 16 15 39 39 H 1.07997 * 126.03992 * 0.02856 * 21 20 18 40 40 H 1.08002 * 126.12594 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46315 * 65.81881 * 26 14 13 42 42 H 1.09005 * 109.45975 * 305.85394 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5614 -5.1050 0.0026 13 6 2.7331 -6.0288 0.0044 14 7 1.9987 -7.3010 0.0042 15 6 1.2520 -7.4777 1.2564 16 6 0.3875 -8.7370 1.1630 17 6 1.2867 -9.9498 0.9076 18 6 2.0889 -9.7192 -0.3762 19 1 1.4058 -9.6288 -1.2208 20 6 3.0200 -10.8822 -0.6033 21 6 3.6757 -11.6143 0.3918 22 6 4.4164 -12.5707 -0.2147 23 7 4.2362 -12.4476 -1.5465 24 1 4.6446 -13.0003 -2.2310 25 7 3.3502 -11.3849 -1.7653 26 6 2.9041 -8.4314 -0.2381 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0028 31 1 3.3590 -5.9703 0.8948 32 1 3.3605 -5.9719 -0.8852 33 1 0.6134 -6.6104 1.4239 34 1 1.9524 -7.5786 2.0855 35 1 -0.3223 -8.6311 0.3425 36 1 -0.1551 -8.8767 2.0979 37 1 0.6714 -10.8426 0.7972 38 1 1.9708 -10.0790 1.7463 39 1 3.6036 -11.4461 1.4562 40 1 5.0407 -13.3010 0.2786 41 1 3.5966 -8.5278 0.5981 42 1 3.4654 -8.2568 -1.1560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916741972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:52 Heat of formation + Delta-G solvation = 33.748207 kcal Electronic energy + Delta-G solvation = -22822.257172 eV Core-core repulsion = 19417.431483 eV Total energy + Delta-G solvation = -3404.825688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47319 -39.45268 -37.95191 -34.31842 -33.82834 -32.36915 -32.11796 -30.21853 -29.74729 -28.28282 -26.34752 -23.86841 -23.30305 -22.15515 -21.71356 -20.35510 -19.55371 -19.15604 -18.33746 -17.00671 -16.00845 -15.60684 -15.23561 -15.01906 -14.89654 -14.74406 -14.34595 -14.05117 -13.82149 -13.70948 -13.57870 -13.04322 -12.78225 -12.55839 -12.33109 -12.00230 -11.85064 -11.44917 -11.31271 -10.97372 -10.95635 -10.85485 -10.64900 -10.48785 -10.41981 -10.26459 -9.60785 -9.37515 -8.98893 -8.90737 -8.69248 -8.12032 -7.79512 -6.13527 -4.20341 1.63888 2.52222 2.61832 3.27152 3.31885 3.33345 3.45888 3.73099 4.26989 4.40425 4.50991 4.53709 4.81646 4.84580 5.10806 5.22285 5.25593 5.31655 5.35001 5.44196 5.47333 5.52984 5.60162 5.62382 5.66891 5.75758 5.82627 5.95418 6.03921 6.12082 6.34375 6.39309 6.45037 7.00157 7.08960 7.24264 7.37630 7.45429 7.50927 7.56914 7.71729 8.01083 8.69195 8.83230 9.18941 9.46454 10.96637 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.002570 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.698313 B =10893.190570 C =11344.504732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.499 3.501 12 O -0.537 6.537 13 C 0.037 3.963 14 N -0.518 5.518 15 C 0.049 3.951 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.005 4.005 19 H 0.095 0.905 20 C 0.090 3.910 21 C -0.266 4.266 22 C 0.053 3.947 23 N -0.482 5.482 24 H 0.438 0.562 25 N -0.291 5.291 26 C 0.071 3.929 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.389 0.611 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.147 0.853 40 H 0.175 0.825 41 H 0.035 0.965 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -24.980 2.165 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.283 3.717 12 O -0.415 6.415 13 C -0.095 4.095 14 N -0.242 5.242 15 C -0.079 4.079 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.025 4.025 19 H 0.114 0.886 20 C -0.078 4.078 21 C -0.295 4.295 22 C -0.094 4.094 23 N -0.189 5.189 24 H 0.281 0.719 25 N -0.114 5.114 26 C -0.058 4.058 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.221 0.779 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.164 0.836 40 H 0.192 0.808 41 H 0.053 0.947 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.518 -24.895 0.535 26.317 hybrid contribution 2.029 0.530 1.171 2.401 sum 10.547 -24.365 1.705 26.604 Atomic orbital electron populations 1.69961 1.06091 1.27374 1.48865 1.24950 0.94911 0.99414 0.94757 0.86481 0.79415 0.82383 0.78658 1.20084 1.21092 1.20104 1.21201 0.93208 0.90531 1.53223 0.92004 1.19065 0.88275 0.81881 0.97667 1.46451 1.11030 1.06124 1.72922 1.20285 0.89579 0.84036 0.77795 1.90623 1.16640 1.84494 1.49766 1.21983 0.95438 0.89522 1.02512 1.61479 1.26315 1.00088 1.36328 1.22308 0.96861 1.00138 0.88557 1.21547 0.98015 0.93223 1.02341 1.21616 0.98247 0.98584 0.96231 1.19550 0.94335 0.88662 1.00001 0.88648 1.22319 0.97816 0.97304 0.90331 1.21446 1.06213 1.01108 1.00739 1.22586 1.01149 1.00858 0.84798 1.46371 1.38083 1.28007 1.06464 0.71897 1.77358 1.09582 1.01826 1.22598 1.22003 0.93436 0.89506 1.00890 0.92413 0.95549 0.95652 0.77873 0.92498 0.88413 0.88180 0.95671 0.90636 0.91334 0.91660 0.91838 0.83570 0.80823 0.94690 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.50 9.99 7.50 -10.99 -0.08 9.90 16 12 O -0.54 -12.84 14.34 5.56 0.08 -12.77 16 13 C 0.04 0.54 5.45 -4.98 -0.03 0.52 16 14 N -0.52 -7.55 4.39 -236.11 -1.04 -8.59 16 15 C 0.05 0.69 5.11 -3.83 -0.02 0.67 16 16 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 17 C -0.11 -1.09 4.92 -26.60 -0.13 -1.22 16 18 C 0.00 -0.05 2.81 -91.69 -0.26 -0.31 16 19 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.09 0.99 6.13 -82.41 -0.51 0.49 16 21 C -0.27 -2.34 9.97 -40.01 -0.40 -2.74 16 22 C 0.05 0.36 11.99 -17.22 -0.21 0.16 16 23 N -0.48 -3.83 7.36 30.45 0.22 -3.61 16 24 H 0.44 2.03 8.96 -182.61 -1.64 0.40 16 25 N -0.29 -3.43 12.70 33.67 0.43 -3.00 16 26 C 0.07 0.85 4.72 -3.84 -0.02 0.83 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 31 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.10 1.27 7.98 -51.93 -0.41 0.85 16 33 H 0.10 1.75 5.80 -51.93 -0.30 1.44 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 7.19 -51.93 -0.37 0.20 16 39 H 0.15 1.07 7.37 -52.49 -0.39 0.69 16 40 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -34.29 344.21 -9.63 -43.92 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.63 Total: 3.89 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.25 Total: 0.01 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.01 Total: -56.17 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.29 -9.63 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916741972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.669 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds