Wall clock time and date at job start Tue Mar 31 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46972 * 240.00033 * 3 2 1 5 5 H 1.48495 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47144 * 119.99816 * 3 2 1 7 7 C 1.37878 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99568 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00499 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99496 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.46850 * 110.99813 * 293.95378 * 14 13 11 16 16 C 1.53033 * 109.52490 * 174.15761 * 15 14 13 17 17 C 1.53119 * 109.27787 * 59.17980 * 16 15 14 18 18 C 1.53126 * 109.16048 * 302.34386 * 17 16 15 19 19 H 1.09006 * 109.50177 * 297.71578 * 18 17 16 20 20 C 1.50701 * 109.50316 * 177.59710 * 18 17 16 21 21 C 1.39869 * 125.89773 * 324.99695 * 20 18 17 22 22 C 1.35316 * 107.91764 * 180.02562 * 21 20 18 23 23 N 1.34954 * 107.74599 * 0.02562 * 22 21 20 24 24 H 0.96999 * 126.03585 * 179.97438 * 23 22 21 25 25 N 1.30837 * 125.89739 * 144.69472 * 20 18 17 26 26 C 1.46845 * 111.00565 * 169.74312 * 14 13 11 27 27 H 0.96997 * 120.00422 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46790 * 59.99714 * 9 7 2 29 29 H 1.09003 * 109.46665 * 300.00223 * 9 7 2 30 30 H 0.96993 * 119.99669 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.47270 * 59.99824 * 13 11 10 32 32 H 1.09003 * 109.47247 * 299.99768 * 13 11 10 33 33 H 1.09005 * 109.46186 * 54.13967 * 15 14 13 34 34 H 1.09004 * 109.45360 * 294.17122 * 15 14 13 35 35 H 1.09004 * 109.50318 * 299.23790 * 16 15 14 36 36 H 1.08999 * 109.53400 * 179.13825 * 16 15 14 37 37 H 1.08999 * 109.52185 * 182.44278 * 17 16 15 38 38 H 1.08993 * 109.52436 * 62.24928 * 17 16 15 39 39 H 1.07997 * 126.03992 * 0.02856 * 21 20 18 40 40 H 1.08002 * 126.12594 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46315 * 65.81881 * 26 14 13 42 42 H 1.09005 * 109.45975 * 305.85394 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0025 12 8 0.5614 -5.1050 0.0026 13 6 2.7331 -6.0288 0.0044 14 7 1.9987 -7.3010 0.0042 15 6 1.2520 -7.4777 1.2564 16 6 0.3875 -8.7370 1.1630 17 6 1.2867 -9.9498 0.9076 18 6 2.0889 -9.7192 -0.3762 19 1 1.4058 -9.6288 -1.2208 20 6 3.0200 -10.8822 -0.6033 21 6 3.6757 -11.6143 0.3918 22 6 4.4164 -12.5707 -0.2147 23 7 4.2362 -12.4476 -1.5465 24 1 4.6446 -13.0003 -2.2310 25 7 3.3502 -11.3849 -1.7653 26 6 2.9041 -8.4314 -0.2381 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0028 31 1 3.3590 -5.9703 0.8948 32 1 3.3605 -5.9719 -0.8852 33 1 0.6134 -6.6104 1.4239 34 1 1.9524 -7.5786 2.0855 35 1 -0.3223 -8.6311 0.3425 36 1 -0.1551 -8.8767 2.0979 37 1 0.6714 -10.8426 0.7972 38 1 1.9708 -10.0790 1.7463 39 1 3.6036 -11.4461 1.4562 40 1 5.0407 -13.3010 0.2786 41 1 3.5966 -8.5278 0.5981 42 1 3.4654 -8.2568 -1.1560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916741972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:52 Heat of formation + Delta-G solvation = 7.100984 kcal Electronic energy + Delta-G solvation = -22823.412682 eV Core-core repulsion = 19417.431483 eV Total energy + Delta-G solvation = -3405.981199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13459 -40.82984 -39.27318 -36.11885 -35.00931 -34.31857 -33.09024 -30.87373 -30.59801 -29.95123 -27.95289 -25.01011 -24.62268 -23.69279 -22.33856 -21.52174 -21.02739 -20.00156 -18.99934 -18.77269 -17.50764 -17.22633 -16.57625 -16.54296 -15.94688 -15.91213 -15.46724 -15.31828 -15.03569 -14.65948 -14.40580 -14.18401 -14.08124 -13.97422 -13.79409 -13.54051 -13.12900 -12.90377 -12.77327 -12.61665 -12.26393 -12.22633 -11.77000 -11.58587 -11.52757 -11.48673 -11.28561 -10.77301 -10.59120 -10.29235 -9.76827 -9.59222 -9.21007 -8.27460 -6.44160 1.03110 1.43603 1.47953 1.56044 1.84082 1.84814 2.06947 2.31022 2.50273 3.07059 3.08808 3.66437 3.83047 3.91631 4.03288 4.16339 4.24507 4.33805 4.37335 4.39791 4.50691 4.65658 4.67181 4.72708 4.81626 4.89562 5.01150 5.06426 5.11163 5.14681 5.25236 5.27234 5.33520 5.50561 5.51958 5.72459 5.73808 5.87176 6.02648 6.19771 6.54639 6.67112 6.80029 6.99108 7.25438 7.57474 8.84541 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.002570 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.698313 B =10893.190570 C =11344.504732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.495 3.505 12 O -0.582 6.582 13 C 0.050 3.950 14 N -0.541 5.541 15 C 0.051 3.949 16 C -0.110 4.110 17 C -0.097 4.097 18 C -0.002 4.002 19 H 0.069 0.931 20 C 0.077 3.923 21 C -0.285 4.285 22 C 0.072 3.928 23 N -0.476 5.476 24 H 0.450 0.550 25 N -0.339 5.339 26 C 0.078 3.922 27 H 0.268 0.732 28 H -0.016 1.016 29 H -0.013 1.013 30 H 0.408 0.592 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.219 0.781 41 H 0.053 0.947 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.475 -26.370 3.108 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.462 6.462 13 C -0.081 4.081 14 N -0.266 5.266 15 C -0.077 4.077 16 C -0.148 4.148 17 C -0.135 4.135 18 C -0.022 4.022 19 H 0.087 0.913 20 C -0.089 4.089 21 C -0.314 4.314 22 C -0.076 4.076 23 N -0.185 5.185 24 H 0.296 0.704 25 N -0.163 5.163 26 C -0.050 4.050 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.004 0.996 30 H 0.243 0.757 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.179 0.821 40 H 0.235 0.765 41 H 0.071 0.929 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.993 -26.325 1.467 28.965 hybrid contribution 0.933 0.843 0.855 1.520 sum 12.926 -25.482 2.321 28.667 Atomic orbital electron populations 1.70133 1.08293 1.28595 1.49981 1.26083 0.95782 1.03950 0.93903 0.85204 0.77898 0.76586 0.79505 1.18711 1.21150 1.18552 1.21603 0.94306 0.90617 1.52866 0.89805 1.18482 0.88662 0.84327 0.93883 1.46186 1.11124 1.05510 1.73362 1.21317 0.90006 0.84697 0.75824 1.90612 1.19185 1.85148 1.51295 1.21903 0.93880 0.87247 1.05020 1.61409 1.27508 1.00790 1.36907 1.22211 0.96920 0.99404 0.89135 1.21518 0.97762 0.93264 1.02255 1.21533 0.98082 0.97644 0.96229 1.19432 0.94193 0.89001 0.99617 0.91280 1.22267 0.98172 0.97423 0.91057 1.21708 1.06823 1.01632 1.01236 1.23270 0.99927 1.00370 0.83995 1.46421 1.37205 1.27193 1.07660 0.70399 1.77273 1.11564 1.03798 1.23664 1.21966 0.93128 0.88564 1.01321 0.92280 0.99795 0.99555 0.75694 0.89462 0.85987 0.92241 0.93751 0.92983 0.89790 0.90882 0.89871 0.82087 0.76457 0.92916 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.68 29.54 68.60 2.03 44.70 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.56 -30.60 9.28 25.60 0.24 -30.37 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 15.06 5.43 85.63 0.46 15.53 16 10 N -0.71 -30.51 5.55 -466.79 -2.59 -33.10 16 11 C 0.49 20.24 7.50 87.66 0.66 20.90 16 12 O -0.58 -29.44 14.34 -3.01 -0.04 -29.49 16 13 C 0.05 1.42 5.45 85.56 0.47 1.88 16 14 N -0.54 -15.53 4.39 -900.93 -3.96 -19.49 16 15 C 0.05 1.43 5.11 86.32 0.44 1.87 16 16 C -0.11 -2.59 6.09 30.65 0.19 -2.40 16 17 C -0.10 -1.81 4.92 30.68 0.15 -1.65 16 18 C 0.00 -0.03 2.81 -11.49 -0.03 -0.07 16 19 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 20 C 0.08 1.59 6.13 43.10 0.26 1.86 16 21 C -0.28 -4.17 9.97 21.99 0.22 -3.95 16 22 C 0.07 0.72 11.99 83.54 1.00 1.72 16 23 N -0.48 -6.48 7.36 -57.59 -0.42 -6.90 16 24 H 0.45 3.20 8.96 -213.34 -1.91 1.28 16 25 N -0.34 -7.67 12.70 -47.38 -0.60 -8.27 16 26 C 0.08 1.77 4.72 86.33 0.41 2.17 16 27 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 28 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 30 H 0.41 14.29 8.32 -92.71 -0.77 13.51 16 31 H 0.09 1.99 8.12 -2.39 -0.02 1.97 16 32 H 0.12 2.88 7.98 -2.39 -0.02 2.86 16 33 H 0.06 2.18 5.80 -2.38 -0.01 2.16 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.25 7.19 -2.39 -0.02 1.24 16 39 H 0.16 1.77 7.37 -2.91 -0.02 1.74 16 40 H 0.22 0.08 8.06 -2.91 -0.02 0.05 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.67 8.01 -2.38 -0.02 1.65 16 Total: -1.00 -79.25 344.21 -2.02 -81.27 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -1.64 Total: 19.87 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 4.93 Total: 8.08 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -7.29 Total: -124.44 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -79.25 -2.02 -81.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916741972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.370 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds