Wall clock time and date at job start Tue Mar 31 2020 04:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35359 * 127.24543 * 2 1 4 4 N 1.35040 * 107.22848 * 180.26176 * 3 2 1 5 5 H 0.96993 * 124.88688 * 179.72451 * 4 3 2 6 6 N 1.28476 * 110.22480 * 359.76268 * 4 3 2 7 7 C 1.31803 * 110.07737 * 0.02562 * 6 4 3 8 8 C 1.47707 * 126.52097 * 179.97438 * 7 6 4 9 9 O 1.21566 * 120.00330 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99852 * 0.29925 * 8 7 6 11 11 C 1.46503 * 120.00202 * 179.72561 * 10 8 7 12 12 H 1.09000 * 109.46059 * 34.96506 * 11 10 8 13 13 C 1.53042 * 109.45890 * 274.99594 * 11 10 8 14 14 C 1.53190 * 109.31296 * 178.60984 * 13 11 10 15 15 N 1.46932 * 108.77232 * 54.63705 * 14 13 11 16 16 C 1.36943 * 120.62810 * 126.40940 * 15 14 13 17 17 H 1.07991 * 119.99865 * 207.67032 * 16 15 14 18 18 C 1.38810 * 119.99684 * 27.67870 * 16 15 14 19 19 N 1.31615 * 120.00615 * 17.35641 * 18 16 15 20 20 Si 1.86801 * 119.99506 * 197.36341 * 18 16 15 21 21 H 1.48502 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47500 * 119.99751 * 20 18 16 23 23 H 1.48502 * 109.47100 * 239.99699 * 20 18 16 24 24 C 1.46925 * 118.73963 * 306.39067 * 15 14 13 25 25 H 1.08998 * 109.58824 * 173.39566 * 24 15 14 26 26 C 1.53000 * 109.58600 * 293.67797 * 24 15 14 27 27 C 1.53045 * 109.46160 * 154.92962 * 11 10 8 28 28 H 1.08999 * 109.46869 * 270.11847 * 1 2 3 29 29 H 1.08997 * 109.47091 * 30.11975 * 1 2 3 30 30 H 1.09000 * 109.46705 * 150.11593 * 1 2 3 31 31 H 1.07998 * 126.38954 * 0.02562 * 3 2 1 32 32 H 0.97007 * 119.99938 * 359.71970 * 10 8 7 33 33 H 1.08993 * 109.49815 * 298.56795 * 13 11 10 34 34 H 1.09007 * 109.49601 * 58.66241 * 13 11 10 35 35 H 1.08999 * 109.58443 * 174.41963 * 14 13 11 36 36 H 1.08996 * 109.59153 * 294.70870 * 14 13 11 37 37 H 0.97004 * 120.00057 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.46975 * 59.99787 * 26 24 15 39 39 H 1.08995 * 109.47005 * 179.97438 * 26 24 15 40 40 H 1.09002 * 109.47112 * 300.00311 * 26 24 15 41 41 H 1.08994 * 109.49576 * 301.33783 * 27 11 10 42 42 H 1.09003 * 109.49686 * 61.43428 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0059 5 1 4.3887 1.1730 -0.0111 6 7 3.5998 -0.6695 -0.0045 7 6 2.3635 -1.1264 0.0017 8 6 1.9506 -2.5446 0.0047 9 8 0.7699 -2.8339 0.0101 10 7 2.8828 -3.5178 0.0071 11 6 2.4733 -4.9245 0.0161 12 1 1.5613 -5.0409 -0.5693 13 6 2.2148 -5.3710 1.4569 14 6 1.7534 -6.8317 1.4596 15 7 2.7488 -7.6433 0.7457 16 6 3.3029 -8.7471 1.3372 17 1 4.2931 -9.0717 1.0538 18 6 2.5917 -9.4487 2.3010 19 7 1.2905 -9.2834 2.4090 20 14 3.4817 -10.6273 3.4448 21 1 4.9307 -10.6329 3.1200 22 1 3.2909 -10.1909 4.8514 23 1 2.9308 -11.9955 3.2720 24 6 3.1380 -7.2482 -0.6148 25 1 3.9612 -7.8757 -0.9562 26 6 1.9440 -7.4110 -1.5575 27 6 3.5838 -5.7827 -0.5942 28 1 -0.3633 0.0021 1.0277 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3633 -0.8910 -0.5120 31 1 2.0220 2.1138 0.0004 32 1 3.8250 -3.2870 0.0027 33 1 3.1330 -5.2783 2.0368 34 1 1.4401 -4.7440 1.8986 35 1 1.6633 -7.1845 2.4870 36 1 0.7880 -6.9110 0.9599 37 1 0.7936 -9.7735 3.0827 38 1 1.1236 -6.7789 -1.2173 39 1 2.2346 -7.1171 -2.5660 40 1 1.6228 -8.4527 -1.5605 41 1 3.7836 -5.4489 -1.6124 42 1 4.4892 -5.6862 0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947290963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:20 Heat of formation + Delta-G solvation = 51.476757 kcal Electronic energy + Delta-G solvation = -23793.309681 eV Core-core repulsion = 20389.252761 eV Total energy + Delta-G solvation = -3404.056921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79938 -39.42754 -37.58930 -34.44951 -33.12338 -32.54872 -31.56872 -30.54934 -29.36287 -27.25367 -26.83922 -24.70873 -23.73322 -21.88750 -21.52416 -20.61115 -19.93671 -18.49899 -18.18025 -17.11117 -16.44341 -15.94341 -15.72192 -14.69749 -14.26804 -14.15537 -13.74431 -13.67329 -13.54430 -13.23276 -12.97693 -12.93085 -12.52866 -12.40841 -12.19241 -12.14509 -11.35126 -11.03083 -10.95024 -10.86005 -10.75019 -10.55787 -10.27913 -10.12338 -9.99634 -9.74126 -9.65459 -9.56725 -9.28752 -9.00691 -8.61057 -8.34317 -6.63779 -5.73677 -3.15744 1.52880 1.96823 2.67748 3.39913 3.45833 3.48452 3.50362 3.56523 4.39886 4.52979 4.61815 5.07855 5.17613 5.36528 5.40110 5.45474 5.47118 5.68533 5.73654 5.85792 5.88288 6.05680 6.09462 6.14666 6.32857 6.35965 6.43474 6.52245 6.54755 6.65890 6.73685 6.76438 6.86794 6.97187 7.03328 7.22155 7.45688 7.58652 7.75823 7.85218 7.90942 8.47919 8.50874 9.26430 9.90135 10.46871 11.34504 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.003488 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.191939 B = 8025.561633 C = 8062.990718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.146 4.146 3 C -0.025 4.025 4 N -0.385 5.385 5 H 0.445 0.555 6 N -0.260 5.260 7 C -0.007 4.007 8 C 0.598 3.402 9 O -0.530 6.530 10 N -0.711 5.711 11 C 0.150 3.850 12 H 0.087 0.913 13 C -0.147 4.147 14 C 0.174 3.826 15 N -0.586 5.586 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.170 3.830 25 H 0.065 0.935 26 C -0.162 4.162 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.183 0.817 32 H 0.400 0.600 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 20.995 -6.011 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.169 4.169 4 N -0.098 5.098 5 H 0.289 0.711 6 N -0.097 5.097 7 C -0.169 4.169 8 C 0.381 3.619 9 O -0.404 6.404 10 N -0.360 5.360 11 C 0.047 3.953 12 H 0.105 0.895 13 C -0.187 4.187 14 C 0.048 3.952 15 N -0.307 5.307 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.062 3.938 25 H 0.083 0.917 26 C -0.222 4.222 27 C -0.172 4.172 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.200 0.800 32 H 0.234 0.766 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.749 20.269 -5.887 21.437 hybrid contribution 0.546 0.269 0.688 0.919 sum 4.294 20.539 -5.199 21.617 Atomic orbital electron populations 1.20192 0.88010 1.03093 1.02521 1.20443 0.97707 0.90463 1.07004 1.22680 0.84227 1.00501 1.09468 1.43203 1.08507 1.04457 1.53669 0.71061 1.73533 1.23316 0.93758 1.19070 1.22092 0.89306 0.95584 1.09890 1.16883 0.85753 0.82427 0.76815 1.90777 1.16801 1.82526 1.50332 1.46204 1.09474 1.06758 1.73600 1.21145 0.98631 0.77310 0.98249 0.89517 1.22577 1.00872 1.00591 0.94698 1.20739 0.90265 0.84896 0.99318 1.44183 1.48392 1.28462 1.09671 1.19206 0.97059 1.03525 1.18296 0.91639 1.25034 0.94905 0.97997 1.01654 1.70048 1.05014 1.44103 1.35219 0.86262 0.79195 0.80535 0.80999 1.20308 1.21637 1.21814 1.20435 0.95331 0.91316 0.86713 0.91687 1.22302 1.00278 1.01931 0.97669 1.22299 0.97792 0.97839 0.99296 0.91371 0.92114 0.89695 0.80020 0.76595 0.92690 0.92836 0.89327 0.96008 0.93707 0.93146 0.94505 0.92614 0.92565 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.92 36.01 0.36 -0.51 16 2 C -0.15 -1.72 6.25 -104.40 -0.65 -2.37 16 3 C -0.02 -0.20 11.97 -17.17 -0.21 -0.40 16 4 N -0.38 -3.11 6.83 30.47 0.21 -2.90 16 5 H 0.45 1.74 8.96 -190.44 -1.71 0.03 16 6 N -0.26 -3.14 11.92 33.42 0.40 -2.74 16 7 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 8 C 0.60 10.04 7.79 -12.39 -0.10 9.94 16 9 O -0.53 -10.34 14.78 5.31 0.08 -10.26 16 10 N -0.71 -11.33 5.07 -54.75 -0.28 -11.61 16 11 C 0.15 2.72 2.21 -67.88 -0.15 2.57 16 12 H 0.09 1.73 5.94 -51.93 -0.31 1.43 16 13 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16 14 C 0.17 4.26 4.89 -3.71 -0.02 4.24 16 15 N -0.59 -14.50 2.70 -164.78 -0.45 -14.95 16 16 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 17 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 20 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 C 0.17 3.51 3.28 -67.60 -0.22 3.29 16 25 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 26 C -0.16 -3.18 9.04 37.16 0.34 -2.84 16 27 C -0.13 -2.30 5.03 -26.61 -0.13 -2.44 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.12 6.72 -51.93 -0.35 0.77 16 31 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.40 5.62 8.33 -40.82 -0.34 5.28 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 36 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.05 1.02 5.75 -51.93 -0.30 0.72 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -32.93 337.63 -8.59 -41.52 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.47 Total: 4.14 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.76 Total: 0.60 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.50 Total: -57.83 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.93 -8.59 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947290963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.992 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds