Wall clock time and date at job start Tue Mar 31 2020 04:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35359 * 127.24543 * 2 1 4 4 N 1.35040 * 107.22848 * 180.26176 * 3 2 1 5 5 H 0.96993 * 124.88688 * 179.72451 * 4 3 2 6 6 N 1.28476 * 110.22480 * 359.76268 * 4 3 2 7 7 C 1.31803 * 110.07737 * 0.02562 * 6 4 3 8 8 C 1.47707 * 126.52097 * 179.97438 * 7 6 4 9 9 O 1.21566 * 120.00330 * 180.02562 * 8 7 6 10 10 N 1.34771 * 119.99852 * 0.29925 * 8 7 6 11 11 C 1.46503 * 120.00202 * 179.72561 * 10 8 7 12 12 H 1.09000 * 109.46059 * 34.96506 * 11 10 8 13 13 C 1.53042 * 109.45890 * 274.99594 * 11 10 8 14 14 C 1.53190 * 109.31296 * 178.60984 * 13 11 10 15 15 N 1.46932 * 108.77232 * 54.63705 * 14 13 11 16 16 C 1.36943 * 120.62810 * 126.40940 * 15 14 13 17 17 H 1.07991 * 119.99865 * 207.67032 * 16 15 14 18 18 C 1.38810 * 119.99684 * 27.67870 * 16 15 14 19 19 N 1.31615 * 120.00615 * 17.35641 * 18 16 15 20 20 Si 1.86801 * 119.99506 * 197.36341 * 18 16 15 21 21 H 1.48502 * 109.47298 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47500 * 119.99751 * 20 18 16 23 23 H 1.48502 * 109.47100 * 239.99699 * 20 18 16 24 24 C 1.46925 * 118.73963 * 306.39067 * 15 14 13 25 25 H 1.08998 * 109.58824 * 173.39566 * 24 15 14 26 26 C 1.53000 * 109.58600 * 293.67797 * 24 15 14 27 27 C 1.53045 * 109.46160 * 154.92962 * 11 10 8 28 28 H 1.08999 * 109.46869 * 270.11847 * 1 2 3 29 29 H 1.08997 * 109.47091 * 30.11975 * 1 2 3 30 30 H 1.09000 * 109.46705 * 150.11593 * 1 2 3 31 31 H 1.07998 * 126.38954 * 0.02562 * 3 2 1 32 32 H 0.97007 * 119.99938 * 359.71970 * 10 8 7 33 33 H 1.08993 * 109.49815 * 298.56795 * 13 11 10 34 34 H 1.09007 * 109.49601 * 58.66241 * 13 11 10 35 35 H 1.08999 * 109.58443 * 174.41963 * 14 13 11 36 36 H 1.08996 * 109.59153 * 294.70870 * 14 13 11 37 37 H 0.97004 * 120.00057 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.46975 * 59.99787 * 26 24 15 39 39 H 1.08995 * 109.47005 * 179.97438 * 26 24 15 40 40 H 1.09002 * 109.47112 * 300.00311 * 26 24 15 41 41 H 1.08994 * 109.49576 * 301.33783 * 27 11 10 42 42 H 1.09003 * 109.49686 * 61.43428 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0059 5 1 4.3887 1.1730 -0.0111 6 7 3.5998 -0.6695 -0.0045 7 6 2.3635 -1.1264 0.0017 8 6 1.9506 -2.5446 0.0047 9 8 0.7699 -2.8339 0.0101 10 7 2.8828 -3.5178 0.0071 11 6 2.4733 -4.9245 0.0161 12 1 1.5613 -5.0409 -0.5693 13 6 2.2148 -5.3710 1.4569 14 6 1.7534 -6.8317 1.4596 15 7 2.7488 -7.6433 0.7457 16 6 3.3029 -8.7471 1.3372 17 1 4.2931 -9.0717 1.0538 18 6 2.5917 -9.4487 2.3010 19 7 1.2905 -9.2834 2.4090 20 14 3.4817 -10.6273 3.4448 21 1 4.9307 -10.6329 3.1200 22 1 3.2909 -10.1909 4.8514 23 1 2.9308 -11.9955 3.2720 24 6 3.1380 -7.2482 -0.6148 25 1 3.9612 -7.8757 -0.9562 26 6 1.9440 -7.4110 -1.5575 27 6 3.5838 -5.7827 -0.5942 28 1 -0.3633 0.0021 1.0277 29 1 -0.3633 0.8889 -0.5157 30 1 -0.3633 -0.8910 -0.5120 31 1 2.0220 2.1138 0.0004 32 1 3.8250 -3.2870 0.0027 33 1 3.1330 -5.2783 2.0368 34 1 1.4401 -4.7440 1.8986 35 1 1.6633 -7.1845 2.4870 36 1 0.7880 -6.9110 0.9599 37 1 0.7936 -9.7735 3.0827 38 1 1.1236 -6.7789 -1.2173 39 1 2.2346 -7.1171 -2.5660 40 1 1.6228 -8.4527 -1.5605 41 1 3.7836 -5.4489 -1.6124 42 1 4.4892 -5.6862 0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947290963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:19 Heat of formation + Delta-G solvation = 28.092383 kcal Electronic energy + Delta-G solvation = -23794.323704 eV Core-core repulsion = 20389.252761 eV Total energy + Delta-G solvation = -3405.070943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.60613 -40.84668 -39.20757 -36.04564 -34.34267 -33.96033 -32.78369 -32.14095 -31.04491 -28.58393 -27.98954 -26.33441 -25.20450 -23.66762 -23.00021 -21.49752 -21.19318 -20.00333 -19.13757 -18.72280 -17.84626 -17.32240 -16.81316 -16.57920 -15.75774 -15.51449 -15.49762 -15.11222 -14.84488 -14.42157 -14.24299 -14.08342 -13.99588 -13.86128 -13.76040 -13.15442 -13.02376 -12.91295 -12.65661 -12.55337 -12.27981 -12.03717 -11.97589 -11.84286 -11.74761 -11.48846 -11.20658 -10.91289 -10.55349 -10.44178 -9.97947 -9.75704 -8.67862 -7.84276 -5.29063 0.54108 1.20261 1.47263 1.49301 1.59652 1.94276 2.32976 2.38377 2.53018 3.31201 3.43775 3.63555 3.82866 3.97393 4.09083 4.21650 4.29596 4.45115 4.52160 4.52478 4.60066 4.71638 4.76514 4.85813 4.89610 4.93192 5.04941 5.08814 5.13019 5.17320 5.22037 5.33985 5.45184 5.49840 5.55448 5.60157 5.69900 5.76963 6.18441 6.42282 6.53431 6.91621 7.17067 7.22947 7.88906 8.41443 9.22529 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.003488 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.191939 B = 8025.561633 C = 8062.990718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.178 4.178 3 C 0.009 3.991 4 N -0.362 5.362 5 H 0.466 0.534 6 N -0.271 5.271 7 C -0.042 4.042 8 C 0.594 3.406 9 O -0.567 6.567 10 N -0.702 5.702 11 C 0.162 3.838 12 H 0.068 0.932 13 C -0.132 4.132 14 C 0.186 3.814 15 N -0.600 5.600 16 C -0.257 4.257 17 H 0.072 0.928 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.161 3.839 25 H 0.071 0.929 26 C -0.153 4.153 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.233 0.767 32 H 0.412 0.588 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.053 0.947 36 H -0.006 1.006 37 H 0.248 0.752 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.089 0.911 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 23.871 -6.979 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.189 4.189 3 C -0.136 4.136 4 N -0.079 5.079 5 H 0.314 0.686 6 N -0.109 5.109 7 C -0.201 4.201 8 C 0.379 3.621 9 O -0.445 6.445 10 N -0.352 5.352 11 C 0.057 3.943 12 H 0.086 0.914 13 C -0.172 4.172 14 C 0.060 3.940 15 N -0.322 5.322 16 C -0.387 4.387 17 H 0.090 0.910 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.222 1.222 24 C 0.054 3.946 25 H 0.089 0.911 26 C -0.212 4.212 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.249 0.751 32 H 0.248 0.752 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.012 0.988 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.108 0.892 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.175 23.176 -6.885 24.953 hybrid contribution -0.167 -0.502 0.938 1.077 sum 6.008 22.673 -5.947 24.198 Atomic orbital electron populations 1.20129 0.88045 1.03012 1.02242 1.20724 0.98273 0.90981 1.08885 1.23291 0.83026 1.01614 1.05651 1.43357 1.09797 1.03519 1.51210 0.68571 1.73447 1.22323 0.95637 1.19520 1.21769 0.90884 0.94459 1.13034 1.17335 0.85220 0.83805 0.75709 1.90755 1.18357 1.83426 1.51924 1.45965 1.10102 1.05555 1.73576 1.20789 0.98518 0.79000 0.95945 0.91372 1.22337 1.00345 0.97729 0.96832 1.20402 0.89549 0.87166 0.96916 1.44390 1.48120 1.28091 1.11632 1.19571 0.97280 1.03676 1.18219 0.91046 1.25798 0.95490 1.00113 1.03362 1.70212 1.06513 1.45529 1.35906 0.85237 0.78718 0.78091 0.78577 1.18769 1.22055 1.22155 1.20694 0.95701 0.93496 0.84673 0.91091 1.22182 0.99400 1.00077 0.99560 1.22137 0.97194 0.95079 1.01345 0.91807 0.88948 0.92952 0.75091 0.75167 0.92469 0.93739 0.92826 0.98811 0.94305 0.94608 0.90710 0.95077 0.89215 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.92 71.24 0.71 -0.89 16 2 C -0.18 -3.86 6.25 -19.72 -0.12 -3.98 16 3 C 0.01 0.11 11.97 83.53 1.00 1.11 16 4 N -0.36 -4.43 6.83 -57.51 -0.39 -4.82 16 5 H 0.47 1.52 8.96 -220.00 -1.97 -0.46 16 6 N -0.27 -5.87 11.92 -48.18 -0.57 -6.45 16 7 C -0.04 -1.15 7.13 42.46 0.30 -0.85 16 8 C 0.59 20.09 7.79 86.75 0.68 20.77 16 9 O -0.57 -23.07 14.78 -3.92 -0.06 -23.13 16 10 N -0.70 -21.93 5.07 -445.40 -2.26 -24.19 16 11 C 0.16 5.88 2.21 45.02 0.10 5.97 16 12 H 0.07 2.78 5.94 -2.39 -0.01 2.77 16 13 C -0.13 -5.62 5.65 30.67 0.17 -5.44 16 14 C 0.19 9.57 4.89 86.36 0.42 9.99 16 15 N -0.60 -30.29 2.70 -675.24 -1.82 -32.12 16 16 C -0.26 -14.18 9.59 84.03 0.81 -13.37 16 17 H 0.07 3.79 7.89 -2.92 -0.02 3.77 16 18 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 19 N -0.94 -56.89 11.19 21.65 0.24 -56.65 16 20 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 C 0.16 6.53 3.28 44.97 0.15 6.67 16 25 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 26 C -0.15 -5.96 9.04 71.98 0.65 -5.31 16 27 C -0.12 -3.89 5.03 30.67 0.15 -3.74 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.43 6.72 -2.39 -0.02 1.41 16 31 H 0.23 0.31 8.06 -2.91 -0.02 0.28 16 32 H 0.41 10.90 8.33 -92.70 -0.77 10.13 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.05 3.11 6.04 -2.39 -0.01 3.10 16 36 H -0.01 -0.35 7.51 -2.39 -0.02 -0.36 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 38 H 0.03 1.48 5.75 -2.38 -0.01 1.46 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.90 337.63 0.90 -75.00 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -1.69 Total: 16.34 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.43 Total: 8.39 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -4.81 Total: -124.23 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.90 0.90 -75.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947290963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.093 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds