Wall clock time and date at job start Tue Mar 31 2020 04:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35370 * 127.24527 * 2 1 4 4 N 1.35037 * 107.22515 * 180.25515 * 3 2 1 5 5 H 0.97000 * 124.88218 * 179.72858 * 4 3 2 6 6 N 1.28464 * 110.23367 * 359.72938 * 4 3 2 7 7 C 1.31813 * 110.07282 * 359.97438 * 6 4 3 8 8 C 1.47706 * 126.51791 * 180.02562 * 7 6 4 9 9 O 1.21572 * 120.00042 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99974 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99842 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.49625 * 35.07440 * 11 10 8 13 13 C 1.53183 * 109.50238 * 275.00580 * 11 10 8 14 14 N 1.46927 * 108.78012 * 185.38158 * 13 11 10 15 15 C 1.36933 * 120.63353 * 233.59018 * 14 13 11 16 16 H 1.08000 * 120.00191 * 151.84471 * 15 14 13 17 17 C 1.38816 * 120.00216 * 331.84389 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.07025 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.07047 * 17 15 14 20 20 H 1.48493 * 109.47484 * 90.00085 * 19 17 15 21 21 H 1.48503 * 109.47169 * 210.00310 * 19 17 15 22 22 H 1.48506 * 109.47138 * 329.99723 * 19 17 15 23 23 C 1.46927 * 118.73625 * 53.60636 * 14 13 11 24 24 C 1.53188 * 108.89428 * 306.32307 * 23 14 13 25 25 C 1.53047 * 109.52372 * 155.15123 * 11 10 8 26 26 H 1.08999 * 109.45547 * 61.32512 * 25 11 10 27 27 C 1.53002 * 109.45598 * 301.35896 * 25 11 10 28 28 H 1.08992 * 109.47616 * 270.18177 * 1 2 3 29 29 H 1.08998 * 109.47032 * 30.19241 * 1 2 3 30 30 H 1.09004 * 109.46737 * 150.19035 * 1 2 3 31 31 H 1.07993 * 126.38648 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00057 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.58943 * 65.59275 * 13 11 10 34 34 H 1.08997 * 109.59011 * 305.16874 * 13 11 10 35 35 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 36 36 H 1.09007 * 109.58506 * 66.18326 * 23 14 13 37 37 H 1.09000 * 109.58539 * 186.46214 * 23 14 13 38 38 H 1.08999 * 109.49809 * 174.65694 * 24 23 14 39 39 H 1.08993 * 109.50069 * 294.75424 * 24 23 14 40 40 H 1.08999 * 109.47631 * 60.00181 * 27 25 11 41 41 H 1.09003 * 109.46594 * 180.02562 * 27 25 11 42 42 H 1.09002 * 109.47240 * 299.99097 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0057 5 1 4.3886 1.1730 -0.0108 6 7 3.5998 -0.6693 -0.0035 7 6 2.3635 -1.1263 0.0042 8 6 1.9507 -2.5445 0.0095 9 8 0.7699 -2.8339 0.0161 10 7 2.8830 -3.5178 0.0071 11 6 2.4735 -4.9244 0.0129 12 1 1.5613 -5.0401 -0.5724 13 6 2.2172 -5.3764 1.4539 14 7 1.9343 -6.8182 1.4541 15 6 0.7977 -7.3061 2.0416 16 1 0.3544 -8.2227 1.6814 17 6 0.2153 -6.6227 3.1003 18 7 0.9054 -5.7137 3.7559 19 14 -1.5477 -6.9931 3.5942 20 1 -1.5600 -8.0754 4.6108 21 1 -2.1690 -5.7709 4.1648 22 1 -2.3157 -7.4272 2.3996 23 6 2.8944 -7.7265 0.8123 24 6 3.1437 -7.2516 -0.6226 25 6 3.5840 -5.7829 -0.5970 26 1 4.4887 -5.6861 0.0031 27 6 3.8666 -5.3115 -2.0249 28 1 -0.3634 0.0033 1.0275 29 1 -0.3633 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5109 31 1 2.0219 2.1138 -0.0004 32 1 3.8251 -3.2869 0.0022 33 1 1.3620 -4.8362 1.8598 34 1 3.0997 -5.1772 2.0618 35 1 0.4985 -5.2364 4.4959 36 1 3.8322 -7.7189 1.3679 37 1 2.4870 -8.7374 0.7971 38 1 3.9247 -7.8611 -1.0770 39 1 2.2251 -7.3455 -1.2017 40 1 4.1819 -4.2683 -2.0075 41 1 4.6572 -5.9232 -2.4596 42 1 2.9618 -5.4078 -2.6251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965984797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:39 Heat of formation + Delta-G solvation = 51.180937 kcal Electronic energy + Delta-G solvation = -24214.300105 eV Core-core repulsion = 20810.230357 eV Total energy + Delta-G solvation = -3404.069749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62079 -39.25452 -37.39488 -34.27194 -33.12309 -32.88538 -31.32360 -30.83780 -28.73110 -27.29837 -26.99868 -24.29840 -23.76303 -21.87381 -20.96809 -20.45947 -19.74550 -19.10979 -18.17983 -16.71898 -16.69302 -15.73800 -15.40574 -14.74651 -14.09133 -13.96040 -13.64856 -13.61194 -13.27125 -13.23099 -13.04751 -12.85318 -12.77026 -12.32831 -12.00620 -11.91272 -11.57228 -11.50900 -10.83770 -10.78034 -10.62906 -10.54869 -10.37193 -10.09547 -9.91766 -9.82944 -9.45866 -9.38193 -9.34391 -8.82719 -8.38476 -8.34597 -6.57187 -5.68133 -3.11540 1.72224 2.15681 2.84278 3.46624 3.54422 3.57280 3.64728 3.82844 4.57314 4.61972 4.77626 5.24119 5.27174 5.34164 5.37949 5.48009 5.57342 5.62062 5.68329 5.92182 5.99016 6.04668 6.10868 6.11261 6.19983 6.23675 6.32919 6.47997 6.53252 6.57938 6.64978 6.81711 6.84074 6.92783 7.04428 7.07685 7.39187 7.77553 7.81901 7.90995 8.13400 8.55764 8.75266 9.30548 9.94687 10.49984 11.39832 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.005570 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.783676 B = 5025.634088 C = 6474.948655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.145 4.145 3 C -0.027 4.027 4 N -0.387 5.387 5 H 0.444 0.556 6 N -0.262 5.262 7 C -0.002 4.002 8 C 0.597 3.403 9 O -0.522 6.522 10 N -0.705 5.705 11 C 0.125 3.875 12 H 0.083 0.917 13 C 0.167 3.833 14 N -0.588 5.588 15 C -0.256 4.256 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.142 3.858 24 C -0.125 4.125 25 C -0.092 4.092 26 H 0.067 0.933 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.397 0.603 33 H 0.095 0.905 34 H 0.017 0.983 35 H 0.253 0.747 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 12.749 -10.154 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.155 4.155 3 C -0.171 4.171 4 N -0.100 5.100 5 H 0.288 0.712 6 N -0.098 5.098 7 C -0.164 4.164 8 C 0.380 3.620 9 O -0.396 6.396 10 N -0.355 5.355 11 C 0.019 3.981 12 H 0.101 0.899 13 C 0.040 3.960 14 N -0.311 5.311 15 C -0.386 4.386 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.542 5.542 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.016 3.984 24 C -0.165 4.165 25 C -0.111 4.111 26 H 0.085 0.915 27 C -0.202 4.202 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.199 0.801 32 H 0.231 0.769 33 H 0.113 0.887 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.430 12.211 -9.999 17.444 hybrid contribution -0.620 0.791 0.408 1.084 sum 6.811 13.002 -9.590 17.533 Atomic orbital electron populations 1.20190 0.88079 1.02938 1.02634 1.20438 0.97691 0.90500 1.06869 1.22644 0.84270 1.00406 1.09758 1.43172 1.08398 1.04493 1.53943 0.71212 1.73520 1.23363 0.93668 1.19300 1.22132 0.89208 0.95673 1.09383 1.16823 0.85790 0.82309 0.77083 1.90809 1.16734 1.82321 1.49720 1.45904 1.09171 1.06544 1.73855 1.22010 0.97059 0.77372 1.01619 0.89867 1.21100 1.00834 0.84981 0.89125 1.43952 1.21746 1.00531 1.64836 1.19125 1.00613 1.08953 1.09865 0.91681 1.25035 0.98830 0.99645 0.95723 1.70020 1.35086 1.27936 1.21195 0.86316 0.85168 0.77166 0.78237 1.21516 1.21532 1.20381 1.20957 0.92896 0.94092 0.90496 1.22119 1.00323 0.94088 0.99924 1.21354 0.98189 0.96002 0.95574 0.91508 1.21849 1.01037 1.00420 0.96846 0.91285 0.92254 0.89693 0.80133 0.76873 0.88660 0.96515 0.93703 0.96488 0.92673 0.92626 0.92094 0.93158 0.93211 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.92 36.00 0.36 -0.71 16 2 C -0.14 -2.02 6.25 -104.40 -0.65 -2.67 16 3 C -0.03 -0.26 11.97 -17.16 -0.21 -0.47 16 4 N -0.39 -3.75 6.83 30.47 0.21 -3.54 16 5 H 0.44 2.36 8.96 -190.44 -1.71 0.65 16 6 N -0.26 -3.62 11.92 33.42 0.40 -3.22 16 7 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 8 C 0.60 11.64 7.79 -12.39 -0.10 11.54 16 9 O -0.52 -11.97 14.78 5.30 0.08 -11.89 16 10 N -0.70 -12.79 4.37 -54.68 -0.24 -13.03 16 11 C 0.12 2.53 2.06 -67.81 -0.14 2.39 16 12 H 0.08 1.90 7.58 -51.93 -0.39 1.51 16 13 C 0.17 4.20 4.88 -3.71 -0.02 4.18 16 14 N -0.59 -15.27 2.99 -172.32 -0.52 -15.79 16 15 C -0.26 -7.32 9.58 -15.06 -0.14 -7.46 16 16 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 17 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 18 N -0.90 -27.34 11.20 55.49 0.62 -26.72 16 19 Si 0.90 22.84 29.59 -169.99 -5.03 17.81 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.14 3.02 6.50 -3.71 -0.02 2.99 16 24 C -0.12 -2.18 5.39 -26.45 -0.14 -2.32 16 25 C -0.09 -1.55 2.27 -90.41 -0.21 -1.76 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 C -0.14 -2.02 9.02 37.16 0.34 -1.68 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.33 6.73 -51.93 -0.35 0.98 16 31 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.40 6.30 8.03 -40.82 -0.33 5.97 16 33 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -34.77 340.87 -8.62 -43.39 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.66 Total: 4.33 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.61 Total: 3.52 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.47 Total: -62.30 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.77 -8.62 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965984797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.567 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds