Wall clock time and date at job start Tue Mar 31 2020 03:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 126.12859 * 2 1 4 4 C 1.50698 * 126.04114 * 359.97438 * 3 2 1 5 5 C 1.50704 * 109.47177 * 85.00060 * 4 3 2 6 6 O 1.21276 * 120.00017 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99540 * 180.02562 * 5 4 3 8 8 C 1.47422 * 125.65574 * 0.02562 * 7 5 4 9 9 C 1.54904 * 104.83588 * 155.83543 * 8 7 5 10 10 C 1.55163 * 101.58089 * 37.01349 * 9 8 7 11 11 H 1.09002 * 110.71868 * 83.03475 * 10 9 8 12 12 N 1.46490 * 110.71993 * 206.13410 * 10 9 8 13 13 C 1.36935 * 120.00121 * 273.54103 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46653 * 299.99639 * 17 15 13 20 20 H 1.48495 * 109.47483 * 60.00002 * 17 15 13 21 21 C 1.47030 * 125.64522 * 179.97438 * 7 5 4 22 22 C 1.39875 * 107.91988 * 180.23891 * 3 2 1 23 23 N 1.30838 * 108.20244 * 359.55492 * 22 3 2 24 24 N 1.34952 * 126.12379 * 179.97438 * 2 1 3 25 25 C 1.46498 * 126.03700 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.46993 * 90.00066 * 1 2 3 27 27 H 1.09003 * 109.47404 * 210.00712 * 1 2 3 28 28 H 1.09000 * 109.46873 * 330.00003 * 1 2 3 29 29 H 1.08997 * 109.47077 * 324.99762 * 4 3 2 30 30 H 1.08997 * 109.47174 * 205.00296 * 4 3 2 31 31 H 1.09000 * 110.36241 * 36.99895 * 8 7 5 32 32 H 1.09002 * 110.37154 * 274.68108 * 8 7 5 33 33 H 1.08994 * 111.00996 * 278.93912 * 9 8 7 34 34 H 1.09004 * 111.00310 * 155.08595 * 9 8 7 35 35 H 0.97000 * 120.00577 * 93.54703 * 12 10 9 36 36 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.88565 * 61.67072 * 21 7 5 38 38 H 1.08999 * 109.87582 * 300.50826 * 21 7 5 39 39 H 1.08002 * 125.89750 * 179.72980 * 22 3 2 40 40 H 1.09007 * 109.47343 * 89.99862 * 25 24 2 41 41 H 1.09000 * 109.46927 * 209.99183 * 25 24 2 42 42 H 1.08994 * 109.47384 * 329.99968 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 -0.0005 5 6 1.5711 2.9682 1.4147 6 8 1.7361 2.1937 2.3333 7 7 1.1444 4.2229 1.6594 8 6 0.9027 5.2621 0.6420 9 6 -0.1153 6.2289 1.2967 10 6 0.3644 6.2338 2.7723 11 1 1.1862 6.9369 2.9084 12 7 -0.7433 6.5528 3.6763 13 6 -1.0466 7.8591 3.9533 14 1 -0.4694 8.6542 3.5050 15 6 -2.0959 8.1615 4.8103 16 7 -2.7990 7.1924 5.3571 17 14 -2.5100 9.9435 5.1875 18 1 -3.6622 9.9967 6.1229 19 1 -1.3351 10.6031 5.8122 20 1 -2.8613 10.6474 3.9281 21 6 0.8418 4.7818 2.9852 22 6 3.6335 0.6558 -0.0055 23 7 3.6334 -0.6526 0.0009 24 7 2.3026 -1.0901 0.0005 25 6 1.8538 -2.4846 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.9310 2.6154 -0.5904 30 1 2.6188 3.1584 -0.4348 31 1 0.4794 4.8192 -0.2595 32 1 1.8288 5.7874 0.4087 33 1 -1.1304 5.8401 1.2172 34 1 -0.0448 7.2250 0.8597 35 1 -1.2620 5.8388 4.0788 36 1 -2.5842 6.2671 5.1609 37 1 1.7387 4.7736 3.6045 38 1 0.0541 4.1986 3.4622 39 1 4.5084 1.2890 -0.0111 40 1 1.7428 -2.8307 -1.0271 41 1 2.5896 -3.1030 0.5147 42 1 0.8952 -2.5578 0.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968881015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:05 Heat of formation + Delta-G solvation = 57.832260 kcal Electronic energy + Delta-G solvation = -23093.746698 eV Core-core repulsion = 19689.965372 eV Total energy + Delta-G solvation = -3403.781326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47559 -39.65374 -37.31071 -34.39662 -33.83466 -33.02908 -31.59205 -29.85934 -29.43671 -27.59346 -26.87800 -25.57641 -23.43480 -22.82072 -21.08299 -20.30094 -19.78283 -18.78810 -17.55249 -16.98343 -16.63553 -15.95338 -15.72692 -15.11975 -14.67877 -14.44956 -14.43436 -13.74373 -13.66636 -13.40827 -13.27131 -13.18934 -12.76038 -12.72348 -12.49272 -12.40149 -12.32980 -11.93876 -11.75460 -11.69503 -11.05444 -10.75219 -10.70134 -10.63139 -10.31721 -10.01400 -9.68140 -9.35300 -9.24224 -8.98131 -8.40348 -8.38721 -7.12572 -6.16013 -3.17787 1.74017 2.36561 2.61187 2.84104 3.30433 3.49168 3.52375 3.70052 4.32120 4.49291 4.62467 4.74417 4.81432 4.85683 4.95452 4.98637 5.03817 5.13486 5.18021 5.25736 5.30199 5.36498 5.47848 5.52839 5.58971 5.64039 5.71765 5.78173 5.89718 5.99073 6.05068 6.18647 6.31513 6.50911 6.53030 6.57448 6.82898 6.88733 7.59867 7.73615 7.76288 8.39532 8.69154 9.13918 10.00475 10.14145 11.31923 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.002828 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.150117 B = 9899.980648 C =10178.814809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.221 4.221 4 C -0.053 4.053 5 C 0.523 3.477 6 O -0.538 6.538 7 N -0.616 5.616 8 C 0.098 3.902 9 C -0.153 4.153 10 C 0.176 3.824 11 H 0.064 0.936 12 N -0.728 5.728 13 C -0.335 4.335 14 H 0.067 0.933 15 C -0.043 4.043 16 N -0.941 5.941 17 Si 1.081 2.919 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.294 1.294 21 C 0.102 3.898 22 C 0.064 3.936 23 N -0.302 5.302 24 N -0.376 5.376 25 C 0.102 3.898 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.369 0.631 36 H 0.256 0.744 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.181 0.819 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -13.629 -16.077 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C -0.233 4.233 4 C -0.094 4.094 5 C 0.311 3.689 6 O -0.414 6.414 7 N -0.351 5.351 8 C -0.025 4.025 9 C -0.195 4.195 10 C 0.065 3.935 11 H 0.082 0.918 12 N -0.370 5.370 13 C -0.466 4.466 14 H 0.085 0.915 15 C -0.240 4.240 16 N -0.586 5.586 17 Si 0.911 3.089 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.222 1.222 21 C -0.022 4.022 22 C -0.122 4.122 23 N -0.122 5.122 24 N -0.158 5.158 25 C -0.039 4.039 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.198 0.802 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.261 -14.164 -14.781 22.076 hybrid contribution 0.461 -0.450 -0.782 1.013 sum 8.722 -14.614 -15.563 23.062 Atomic orbital electron populations 1.20467 0.87450 1.04225 1.02996 1.20756 0.94379 0.87039 1.00452 1.19147 0.92585 0.93889 1.17655 1.19856 1.02911 0.92578 0.94088 1.20395 0.76930 0.80067 0.91520 1.90699 1.52011 1.52181 1.46531 1.48541 1.66140 1.11354 1.09088 1.22396 0.99260 0.89373 0.91452 1.23528 0.98443 0.98377 0.99131 1.21125 0.91453 0.91695 0.89236 0.91760 1.42373 1.35090 1.05567 1.53961 1.20009 1.15795 0.83705 1.27089 0.91541 1.25818 0.94989 1.06564 0.96677 1.70886 1.41953 0.99741 1.45975 0.83234 0.76076 0.73546 0.76014 1.21022 1.22186 1.22187 1.22234 1.00400 0.95499 0.84040 1.23665 0.97429 0.92053 0.99059 1.77321 0.96524 1.12885 1.25489 1.48299 1.03970 1.05822 1.57733 1.21805 1.01077 0.77980 1.03085 0.90135 0.91054 0.89634 0.88717 0.88305 0.91204 0.91559 0.90838 0.90527 0.79736 0.93301 0.91785 0.91590 0.80233 0.90885 0.89349 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.80 36.01 0.35 -0.47 16 2 C 0.10 1.20 6.93 -82.26 -0.57 0.63 16 3 C -0.22 -2.77 4.59 -105.05 -0.48 -3.26 16 4 C -0.05 -0.59 4.74 -29.03 -0.14 -0.72 16 5 C 0.52 7.96 7.84 -10.98 -0.09 7.87 16 6 O -0.54 -10.46 16.36 5.56 0.09 -10.37 16 7 N -0.62 -9.28 3.33 -170.52 -0.57 -9.85 16 8 C 0.10 1.21 6.69 -2.53 -0.02 1.19 16 9 C -0.15 -2.43 6.77 -24.58 -0.17 -2.60 16 10 C 0.18 3.37 3.59 -66.10 -0.24 3.13 16 11 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 12 N -0.73 -17.68 5.25 -51.66 -0.27 -17.95 16 13 C -0.34 -9.11 9.98 -15.06 -0.15 -9.26 16 14 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 15 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 16 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 17 Si 1.08 25.33 29.92 -169.99 -5.09 20.24 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.10 1.81 6.61 -3.06 -0.02 1.79 16 22 C 0.06 0.81 11.96 -17.36 -0.21 0.61 16 23 N -0.30 -4.16 12.58 30.63 0.39 -3.78 16 24 N -0.38 -4.47 4.01 -63.89 -0.26 -4.73 16 25 C 0.10 0.74 11.27 59.85 0.67 1.42 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.54 7.08 -51.93 -0.37 0.17 16 28 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 29 H 0.09 0.85 7.72 -51.93 -0.40 0.45 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.68 7.47 -51.93 -0.39 0.30 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.37 9.38 6.34 -40.82 -0.26 9.12 16 36 H 0.26 7.71 6.77 -40.82 -0.28 7.43 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 39 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.47 7.05 -51.93 -0.37 0.10 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -35.97 349.90 -7.11 -43.09 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.30 Total: 7.00 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.14 Total: -0.97 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: 0.05 Total: -64.27 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.97 -7.11 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968881015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.920 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds