Wall clock time and date at job start Tue Mar 31 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35308 * 126.12859 * 2 1 4 4 C 1.50698 * 126.04114 * 359.97438 * 3 2 1 5 5 C 1.50704 * 109.47177 * 85.00060 * 4 3 2 6 6 O 1.21276 * 120.00017 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99540 * 180.02562 * 5 4 3 8 8 C 1.47422 * 125.65574 * 0.02562 * 7 5 4 9 9 C 1.54904 * 104.83588 * 155.83543 * 8 7 5 10 10 C 1.55163 * 101.58089 * 37.01349 * 9 8 7 11 11 H 1.09002 * 110.71868 * 83.03475 * 10 9 8 12 12 N 1.46490 * 110.71993 * 206.13410 * 10 9 8 13 13 C 1.36935 * 120.00121 * 273.54103 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46653 * 299.99639 * 17 15 13 20 20 H 1.48495 * 109.47483 * 60.00002 * 17 15 13 21 21 C 1.47030 * 125.64522 * 179.97438 * 7 5 4 22 22 C 1.39875 * 107.91988 * 180.23891 * 3 2 1 23 23 N 1.30838 * 108.20244 * 359.55492 * 22 3 2 24 24 N 1.34952 * 126.12379 * 179.97438 * 2 1 3 25 25 C 1.46498 * 126.03700 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.46993 * 90.00066 * 1 2 3 27 27 H 1.09003 * 109.47404 * 210.00712 * 1 2 3 28 28 H 1.09000 * 109.46873 * 330.00003 * 1 2 3 29 29 H 1.08997 * 109.47077 * 324.99762 * 4 3 2 30 30 H 1.08997 * 109.47174 * 205.00296 * 4 3 2 31 31 H 1.09000 * 110.36241 * 36.99895 * 8 7 5 32 32 H 1.09002 * 110.37154 * 274.68108 * 8 7 5 33 33 H 1.08994 * 111.00996 * 278.93912 * 9 8 7 34 34 H 1.09004 * 111.00310 * 155.08595 * 9 8 7 35 35 H 0.97000 * 120.00577 * 93.54703 * 12 10 9 36 36 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.88565 * 61.67072 * 21 7 5 38 38 H 1.08999 * 109.87582 * 300.50826 * 21 7 5 39 39 H 1.08002 * 125.89750 * 179.72980 * 22 3 2 40 40 H 1.09007 * 109.47343 * 89.99862 * 25 24 2 41 41 H 1.09000 * 109.46927 * 209.99183 * 25 24 2 42 42 H 1.08994 * 109.47384 * 329.99968 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 -0.0005 5 6 1.5711 2.9682 1.4147 6 8 1.7361 2.1937 2.3333 7 7 1.1444 4.2229 1.6594 8 6 0.9027 5.2621 0.6420 9 6 -0.1153 6.2289 1.2967 10 6 0.3644 6.2338 2.7723 11 1 1.1862 6.9369 2.9084 12 7 -0.7433 6.5528 3.6763 13 6 -1.0466 7.8591 3.9533 14 1 -0.4694 8.6542 3.5050 15 6 -2.0959 8.1615 4.8103 16 7 -2.7990 7.1924 5.3571 17 14 -2.5100 9.9435 5.1875 18 1 -3.6622 9.9967 6.1229 19 1 -1.3351 10.6031 5.8122 20 1 -2.8613 10.6474 3.9281 21 6 0.8418 4.7818 2.9852 22 6 3.6335 0.6558 -0.0055 23 7 3.6334 -0.6526 0.0009 24 7 2.3026 -1.0901 0.0005 25 6 1.8538 -2.4846 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 0.9310 2.6154 -0.5904 30 1 2.6188 3.1584 -0.4348 31 1 0.4794 4.8192 -0.2595 32 1 1.8288 5.7874 0.4087 33 1 -1.1304 5.8401 1.2172 34 1 -0.0448 7.2250 0.8597 35 1 -1.2620 5.8388 4.0788 36 1 -2.5842 6.2671 5.1609 37 1 1.7387 4.7736 3.6045 38 1 0.0541 4.1986 3.4622 39 1 4.5084 1.2890 -0.0111 40 1 1.7428 -2.8307 -1.0271 41 1 2.5896 -3.1030 0.5147 42 1 0.8952 -2.5578 0.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968881015.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:04 Heat of formation + Delta-G solvation = 32.723210 kcal Electronic energy + Delta-G solvation = -23094.835508 eV Core-core repulsion = 19689.965372 eV Total energy + Delta-G solvation = -3404.870136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33527 -40.89647 -38.70630 -36.20983 -34.64505 -33.92421 -33.24338 -31.03371 -30.63584 -29.02435 -27.60633 -26.59515 -25.36768 -24.07565 -22.01147 -21.68157 -20.80845 -19.84312 -19.50688 -18.15232 -17.47205 -17.27378 -16.69778 -16.55661 -16.04477 -15.87412 -15.45482 -15.22949 -14.72774 -14.59069 -14.40047 -14.00154 -13.89313 -13.66442 -13.39309 -13.35001 -13.26958 -13.17372 -12.98558 -12.72822 -12.61790 -12.42272 -12.35595 -11.87296 -11.78465 -11.54421 -11.28416 -10.92660 -10.91239 -10.19404 -9.66736 -9.26577 -9.14184 -8.38393 -5.34125 0.88855 1.59126 1.61415 1.68558 1.69740 1.71192 1.86896 2.17308 2.73903 3.38903 3.58039 3.61852 3.66793 3.76287 3.87363 4.04989 4.10732 4.20672 4.24155 4.32944 4.37504 4.39799 4.44304 4.47229 4.59996 4.63481 4.68033 4.75480 4.85196 4.93616 4.97123 5.02076 5.17732 5.21953 5.26384 5.41245 5.62074 5.69379 6.12981 6.48224 6.59807 6.72616 7.06394 7.21608 7.95572 8.08696 9.13035 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.002828 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.150117 B = 9899.980648 C =10178.814809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.093 3.907 3 C -0.245 4.245 4 C -0.040 4.040 5 C 0.521 3.479 6 O -0.588 6.588 7 N -0.615 5.615 8 C 0.106 3.894 9 C -0.144 4.144 10 C 0.168 3.832 11 H 0.065 0.935 12 N -0.744 5.744 13 C -0.327 4.327 14 H 0.075 0.925 15 C -0.107 4.107 16 N -0.978 5.978 17 Si 1.129 2.871 18 H -0.297 1.297 19 H -0.278 1.278 20 H -0.273 1.273 21 C 0.111 3.889 22 C 0.052 3.948 23 N -0.337 5.337 24 N -0.382 5.382 25 C 0.091 3.909 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.358 0.642 36 H 0.242 0.758 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.198 0.802 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.876 -13.028 -18.803 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.256 4.256 4 C -0.081 4.081 5 C 0.312 3.688 6 O -0.468 6.468 7 N -0.350 5.350 8 C -0.015 4.015 9 C -0.185 4.185 10 C 0.059 3.941 11 H 0.083 0.917 12 N -0.386 5.386 13 C -0.458 4.458 14 H 0.093 0.907 15 C -0.297 4.297 16 N -0.626 5.626 17 Si 0.953 3.047 18 H -0.224 1.224 19 H -0.204 1.204 20 H -0.199 1.199 21 C -0.014 4.014 22 C -0.133 4.133 23 N -0.159 5.159 24 N -0.165 5.165 25 C -0.049 4.049 26 H 0.125 0.875 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.190 0.810 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.215 0.785 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.807 -13.568 -17.587 23.895 hybrid contribution 0.371 -0.733 0.049 0.824 sum 9.178 -14.302 -17.538 24.420 Atomic orbital electron populations 1.20543 0.85552 1.04117 1.04654 1.21295 0.95709 0.87108 0.99420 1.19449 0.92646 0.94903 1.18616 1.19902 1.05070 0.92106 0.90992 1.21262 0.75500 0.79172 0.92895 1.90680 1.54140 1.53498 1.48504 1.48626 1.65918 1.12107 1.08313 1.22574 0.99614 0.88015 0.91326 1.23331 0.98533 1.00127 0.96503 1.21336 0.90083 0.92209 0.90464 0.91697 1.42579 1.36382 1.04459 1.55193 1.20372 1.14818 0.85046 1.25564 0.90726 1.27243 0.95641 1.09563 0.97289 1.71000 1.43741 0.99557 1.48286 0.82618 0.75874 0.69697 0.76474 1.22385 1.20420 1.19874 1.21887 0.99030 0.94596 0.85837 1.24082 0.98484 0.92117 0.98660 1.77243 0.98067 1.13668 1.26888 1.48669 1.03438 1.07259 1.57092 1.22141 1.01854 0.76121 1.04739 0.87456 0.89895 0.90995 0.85996 0.85299 0.87329 0.88660 0.92614 0.89420 0.81037 0.94729 0.92703 0.94220 0.78511 0.88854 0.89319 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.80 71.24 0.70 -0.71 16 2 C 0.09 2.06 6.93 41.40 0.29 2.35 16 3 C -0.24 -5.70 4.59 -20.14 -0.09 -5.79 16 4 C -0.04 -0.76 4.74 29.10 0.14 -0.62 16 5 C 0.52 15.03 7.84 87.66 0.69 15.71 16 6 O -0.59 -22.99 16.36 -3.02 -0.05 -23.04 16 7 N -0.62 -17.40 3.33 -811.80 -2.70 -20.10 16 8 C 0.11 2.20 6.69 86.85 0.58 2.78 16 9 C -0.14 -4.26 6.77 31.99 0.22 -4.04 16 10 C 0.17 6.36 3.59 46.18 0.17 6.52 16 11 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 12 N -0.74 -36.79 5.25 -317.34 -1.67 -38.45 16 13 C -0.33 -17.76 9.98 84.03 0.84 -16.92 16 14 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.11 -6.09 5.50 84.86 0.47 -5.63 16 16 N -0.98 -61.30 13.70 21.65 0.30 -61.00 16 17 Si 1.13 50.85 29.92 68.60 2.05 52.91 16 18 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 C 0.11 4.00 6.61 86.73 0.57 4.57 16 22 C 0.05 1.26 11.96 85.24 1.02 2.28 16 23 N -0.34 -9.14 12.58 -57.02 -0.72 -9.86 16 24 N -0.38 -8.66 4.01 -356.04 -1.43 -10.09 16 25 C 0.09 1.20 11.27 127.77 1.44 2.64 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.07 7.08 -2.39 -0.02 1.06 16 28 H 0.07 1.34 7.89 -2.39 -0.02 1.32 16 29 H 0.12 1.64 7.72 -2.39 -0.02 1.62 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 1.51 7.47 -2.39 -0.02 1.49 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.36 19.00 6.34 -92.71 -0.59 18.41 16 36 H 0.24 15.25 6.77 -92.71 -0.63 14.62 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.63 7.69 -2.39 -0.02 1.61 16 39 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 0.94 7.05 -2.39 -0.02 0.92 16 Total: -1.00 -81.18 349.90 3.39 -77.79 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.58 Total: 28.70 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 7.02 Total: 3.15 kcal Atomic # 7 Polarization: -133.29 SS G_CDS: -6.22 Total: -139.51 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.91 kcal Total: -81.18 3.39 -77.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968881015.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.514 kcal (2) G-P(sol) polarization free energy of solvation -81.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds