Wall clock time and date at job start Tue Mar 31 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30841 * 125.89246 * 2 1 4 4 N 1.40087 * 108.20217 * 180.25649 * 3 2 1 5 5 C 1.46501 * 126.03986 * 179.73858 * 4 3 2 6 6 C 1.34955 * 107.92345 * 359.71621 * 4 3 2 7 7 C 1.35316 * 107.74459 * 0.02562 * 6 4 3 8 8 C 1.50698 * 126.03674 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47177 * 265.02492 * 8 7 6 10 10 O 1.21276 * 120.00017 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99540 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.65574 * 0.02562 * 11 9 8 13 13 C 1.54904 * 104.83588 * 155.83543 * 12 11 9 14 14 C 1.55163 * 101.58089 * 37.01349 * 13 12 11 15 15 H 1.09002 * 110.71868 * 83.03475 * 14 13 12 16 16 N 1.46490 * 110.71993 * 206.13410 * 14 13 12 17 17 C 1.36935 * 120.00121 * 273.54103 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.47030 * 125.64522 * 179.97438 * 11 9 8 26 26 H 1.08998 * 109.47368 * 270.21089 * 1 2 3 27 27 H 1.09000 * 109.47430 * 30.21603 * 1 2 3 28 28 H 1.09001 * 109.46906 * 150.21105 * 1 2 3 29 29 H 1.08995 * 109.47425 * 269.97406 * 5 4 3 30 30 H 1.08997 * 109.46705 * 29.97903 * 5 4 3 31 31 H 1.09006 * 109.46888 * 149.97505 * 5 4 3 32 32 H 1.08001 * 126.12548 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47077 * 145.02194 * 8 7 6 34 34 H 1.08997 * 109.47174 * 25.02728 * 8 7 6 35 35 H 1.09000 * 110.36241 * 36.99895 * 12 11 9 36 36 H 1.09002 * 110.37154 * 274.68108 * 12 11 9 37 37 H 1.08994 * 111.00996 * 278.93912 * 13 12 11 38 38 H 1.09004 * 111.00310 * 155.08595 * 13 12 11 39 39 H 0.97000 * 120.00577 * 93.54703 * 16 14 13 40 40 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 41 41 H 1.08999 * 109.88565 * 61.67072 * 25 11 9 42 42 H 1.08999 * 109.87582 * 300.50826 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6343 -0.0060 5 6 4.7898 1.5010 -0.0134 6 6 3.6142 -0.7153 -0.0032 7 6 2.3272 -1.1329 0.0037 8 6 1.8600 -2.5657 0.0084 9 6 1.5803 -3.0074 -1.4050 10 8 1.7446 -2.2351 -2.3255 11 7 1.1476 -4.2609 -1.6460 12 6 0.9059 -5.2975 -0.6261 13 6 -0.1185 -6.2613 -1.2752 14 6 0.3551 -6.2703 -2.7527 15 1 1.1735 -6.9769 -2.8910 16 7 -0.7575 -6.5863 -3.6517 17 6 -1.0671 -7.8918 -3.9254 18 1 -0.4913 -8.6885 -3.4782 19 6 -2.1211 -8.1913 -4.7777 20 7 -2.8226 -7.2203 -5.3232 21 14 -2.5438 -9.9723 -5.1505 22 1 -1.7790 -10.4237 -6.3408 23 1 -2.1895 -10.8198 -3.9838 24 1 -3.9988 -10.0889 -5.4236 25 6 0.8374 -4.8205 -2.9698 26 1 -0.3634 0.0038 1.0276 27 1 -0.3634 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 5.0779 1.7138 -1.0428 30 1 4.5587 2.4344 0.4997 31 1 5.6117 0.9994 0.4976 32 1 4.4892 -1.3484 -0.0067 33 1 0.9497 -2.6491 0.6020 34 1 2.6348 -3.1990 0.4404 35 1 0.4880 -4.8515 0.2764 36 1 1.8309 -5.8261 -0.3957 37 1 -1.1318 -5.8683 -1.1922 38 1 -0.0503 -7.2570 -0.8369 39 1 -1.2750 -5.8708 -4.0532 40 1 -2.6033 -6.2955 -5.1293 41 1 1.7318 -4.8169 -3.5928 42 1 0.0501 -4.2350 -3.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968935534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:09 Heat of formation + Delta-G solvation = 58.193877 kcal Electronic energy + Delta-G solvation = -23013.754470 eV Core-core repulsion = 19609.988826 eV Total energy + Delta-G solvation = -3403.765645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41916 -39.65066 -37.30981 -34.39085 -34.30219 -32.24451 -31.37534 -29.86267 -29.44668 -28.35705 -26.99969 -24.96790 -23.42158 -22.81629 -21.01065 -20.26497 -19.81892 -18.88408 -17.54787 -16.97143 -16.77373 -15.86466 -15.63858 -15.16772 -14.71215 -14.53265 -14.08999 -13.76902 -13.62086 -13.58641 -13.28189 -13.05686 -12.88836 -12.52453 -12.39891 -12.24274 -12.19954 -12.04657 -11.76940 -11.66620 -11.05384 -10.74794 -10.62615 -10.58077 -10.31023 -10.04063 -9.68904 -9.28698 -9.23828 -8.97284 -8.43760 -8.40066 -7.11541 -6.15255 -3.17077 1.76377 2.36986 2.56802 2.84109 3.30264 3.49577 3.54186 3.68178 4.27629 4.61290 4.62911 4.73553 4.82183 4.88499 4.99538 5.00868 5.10541 5.10854 5.24308 5.29715 5.36564 5.46580 5.52417 5.54498 5.59332 5.71965 5.83084 5.90000 5.92471 5.95640 5.99652 6.19319 6.31899 6.52829 6.53720 6.60156 6.83529 6.87782 7.62759 7.74280 7.76764 8.39590 8.70047 9.14829 10.01337 10.15021 11.32792 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037888 B = 0.002771 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.833328 B =10101.012278 C =10239.019091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.301 5.301 4 N -0.379 5.379 5 C 0.105 3.895 6 C 0.067 3.933 7 C -0.216 4.216 8 C -0.054 4.054 9 C 0.523 3.477 10 O -0.537 6.537 11 N -0.616 5.616 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.177 3.823 15 H 0.064 0.936 16 N -0.728 5.728 17 C -0.335 4.335 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.941 5.941 21 Si 1.084 2.916 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.102 3.898 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 11.865 16.126 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.123 5.123 4 N -0.161 5.161 5 C -0.037 4.037 6 C -0.079 4.079 7 C -0.227 4.227 8 C -0.095 4.095 9 C 0.311 3.689 10 O -0.414 6.414 11 N -0.351 5.351 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.065 3.935 15 H 0.082 0.918 16 N -0.370 5.370 17 C -0.466 4.466 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.586 5.586 21 Si 0.914 3.086 22 H -0.223 1.223 23 H -0.221 1.221 24 H -0.214 1.214 25 C -0.022 4.022 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.188 0.812 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.203 0.797 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.342 12.551 14.853 23.583 hybrid contribution 1.112 0.248 0.736 1.356 sum 14.454 12.799 15.589 24.814 Atomic orbital electron populations 1.20182 0.86790 1.03673 1.02612 1.22156 0.96799 0.90130 0.98222 1.77279 0.86305 1.22664 1.26101 1.48248 1.05558 1.04624 1.57645 1.21808 0.83613 0.94903 1.03335 1.22206 0.98986 0.84971 1.01763 1.19318 0.91987 0.94717 1.16705 1.19848 1.03032 0.92401 0.94258 1.20369 0.77026 0.80035 0.91462 1.90704 1.52167 1.52163 1.46323 1.48537 1.65941 1.11498 1.09141 1.22395 0.99204 0.89433 0.91451 1.23530 0.98438 0.98381 0.99140 1.21121 0.91384 0.91700 0.89284 0.91804 1.42380 1.34733 1.05581 1.54312 1.20035 1.15521 0.83711 1.27348 0.91514 1.25817 0.94960 1.06555 0.96738 1.70849 1.41963 0.99728 1.46049 0.83186 0.76334 0.73532 0.75515 1.22256 1.22084 1.21359 1.22236 1.00345 0.95522 0.84073 0.90534 0.90831 0.90486 0.90857 0.89437 0.89613 0.81175 0.88342 0.88607 0.91158 0.91635 0.90779 0.90539 0.79714 0.93226 0.91834 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.22 36.01 0.37 -0.46 16 2 C 0.09 1.27 7.22 -82.41 -0.59 0.68 16 3 N -0.30 -4.28 12.58 33.67 0.42 -3.86 16 4 N -0.38 -4.37 4.01 -68.16 -0.27 -4.65 16 5 C 0.10 0.69 11.47 59.85 0.69 1.38 16 6 C 0.07 0.74 11.40 -17.22 -0.20 0.54 16 7 C -0.22 -2.72 4.59 -105.06 -0.48 -3.20 16 8 C -0.05 -0.60 4.82 -29.03 -0.14 -0.74 16 9 C 0.52 8.00 7.84 -10.98 -0.09 7.92 16 10 O -0.54 -10.51 16.36 5.56 0.09 -10.42 16 11 N -0.62 -9.31 3.33 -170.52 -0.57 -9.88 16 12 C 0.10 1.21 6.69 -2.53 -0.02 1.20 16 13 C -0.15 -2.45 6.77 -24.58 -0.17 -2.61 16 14 C 0.18 3.38 3.59 -66.10 -0.24 3.14 16 15 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 16 N -0.73 -17.74 5.25 -51.66 -0.27 -18.01 16 17 C -0.34 -9.13 9.98 -15.06 -0.15 -9.28 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 20 N -0.94 -28.86 13.70 55.49 0.76 -28.10 16 21 Si 1.08 25.46 29.92 -169.99 -5.09 20.38 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 C 0.10 1.82 6.61 -3.06 -0.02 1.80 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.10 0.92 7.80 -51.93 -0.41 0.51 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.70 7.47 -51.93 -0.39 0.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.37 9.44 6.34 -40.82 -0.26 9.18 16 40 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.31 7.69 -51.93 -0.40 0.91 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -36.30 352.64 -7.16 -43.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.42 Total: 6.72 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.13 Total: -0.96 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: 0.07 Total: -64.49 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.30 -7.16 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968935534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.657 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds