Wall clock time and date at job start Tue Mar 31 2020 03:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30841 * 125.89246 * 2 1 4 4 N 1.40087 * 108.20217 * 180.25649 * 3 2 1 5 5 C 1.46501 * 126.03986 * 179.73858 * 4 3 2 6 6 C 1.34955 * 107.92345 * 359.71621 * 4 3 2 7 7 C 1.35316 * 107.74459 * 0.02562 * 6 4 3 8 8 C 1.50698 * 126.03674 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47177 * 265.02492 * 8 7 6 10 10 O 1.21276 * 120.00017 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99540 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.65574 * 0.02562 * 11 9 8 13 13 C 1.54904 * 104.83588 * 155.83543 * 12 11 9 14 14 C 1.55163 * 101.58089 * 37.01349 * 13 12 11 15 15 H 1.09002 * 110.71868 * 83.03475 * 14 13 12 16 16 N 1.46490 * 110.71993 * 206.13410 * 14 13 12 17 17 C 1.36935 * 120.00121 * 273.54103 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46685 * 269.99637 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99716 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00435 * 21 19 17 25 25 C 1.47030 * 125.64522 * 179.97438 * 11 9 8 26 26 H 1.08998 * 109.47368 * 270.21089 * 1 2 3 27 27 H 1.09000 * 109.47430 * 30.21603 * 1 2 3 28 28 H 1.09001 * 109.46906 * 150.21105 * 1 2 3 29 29 H 1.08995 * 109.47425 * 269.97406 * 5 4 3 30 30 H 1.08997 * 109.46705 * 29.97903 * 5 4 3 31 31 H 1.09006 * 109.46888 * 149.97505 * 5 4 3 32 32 H 1.08001 * 126.12548 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47077 * 145.02194 * 8 7 6 34 34 H 1.08997 * 109.47174 * 25.02728 * 8 7 6 35 35 H 1.09000 * 110.36241 * 36.99895 * 12 11 9 36 36 H 1.09002 * 110.37154 * 274.68108 * 12 11 9 37 37 H 1.08994 * 111.00996 * 278.93912 * 13 12 11 38 38 H 1.09004 * 111.00310 * 155.08595 * 13 12 11 39 39 H 0.97000 * 120.00577 * 93.54703 * 16 14 13 40 40 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 41 41 H 1.08999 * 109.88565 * 61.67072 * 25 11 9 42 42 H 1.08999 * 109.87582 * 300.50826 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6343 -0.0060 5 6 4.7898 1.5010 -0.0134 6 6 3.6142 -0.7153 -0.0032 7 6 2.3272 -1.1329 0.0037 8 6 1.8600 -2.5657 0.0084 9 6 1.5803 -3.0074 -1.4050 10 8 1.7446 -2.2351 -2.3255 11 7 1.1476 -4.2609 -1.6460 12 6 0.9059 -5.2975 -0.6261 13 6 -0.1185 -6.2613 -1.2752 14 6 0.3551 -6.2703 -2.7527 15 1 1.1735 -6.9769 -2.8910 16 7 -0.7575 -6.5863 -3.6517 17 6 -1.0671 -7.8918 -3.9254 18 1 -0.4913 -8.6885 -3.4782 19 6 -2.1211 -8.1913 -4.7777 20 7 -2.8226 -7.2203 -5.3232 21 14 -2.5438 -9.9723 -5.1505 22 1 -1.7790 -10.4237 -6.3408 23 1 -2.1895 -10.8198 -3.9838 24 1 -3.9988 -10.0889 -5.4236 25 6 0.8374 -4.8205 -2.9698 26 1 -0.3634 0.0038 1.0276 27 1 -0.3634 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 5.0779 1.7138 -1.0428 30 1 4.5587 2.4344 0.4997 31 1 5.6117 0.9994 0.4976 32 1 4.4892 -1.3484 -0.0067 33 1 0.9497 -2.6491 0.6020 34 1 2.6348 -3.1990 0.4404 35 1 0.4880 -4.8515 0.2764 36 1 1.8309 -5.8261 -0.3957 37 1 -1.1318 -5.8683 -1.1922 38 1 -0.0503 -7.2570 -0.8369 39 1 -1.2750 -5.8708 -4.0532 40 1 -2.6033 -6.2955 -5.1293 41 1 1.7318 -4.8169 -3.5928 42 1 0.0501 -4.2350 -3.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968935534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:08 Heat of formation + Delta-G solvation = 32.713334 kcal Electronic energy + Delta-G solvation = -23014.859390 eV Core-core repulsion = 19609.988826 eV Total energy + Delta-G solvation = -3404.870564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27729 -40.89025 -38.70492 -36.20933 -35.10874 -33.51280 -32.77069 -30.90594 -30.59895 -29.61939 -28.20063 -25.92204 -25.27952 -24.05713 -21.96135 -21.62718 -20.84172 -19.95872 -19.50455 -18.14426 -17.64420 -17.12776 -16.70689 -16.51775 -16.07624 -15.82140 -15.47889 -15.09728 -14.73698 -14.55182 -14.32499 -14.13780 -13.94723 -13.73708 -13.36737 -13.26827 -13.20755 -13.03183 -12.95195 -12.75491 -12.66006 -12.39872 -12.36134 -11.84798 -11.77194 -11.46655 -11.28692 -10.93309 -10.92314 -10.16149 -9.66397 -9.29429 -9.14172 -8.38483 -5.34232 0.93030 1.58042 1.61185 1.68409 1.70083 1.71675 1.85286 2.16940 2.73867 3.39081 3.56265 3.60157 3.66966 3.87632 3.89586 4.02198 4.20031 4.20974 4.30464 4.35845 4.40124 4.40995 4.44714 4.46856 4.62854 4.66146 4.73726 4.74183 4.84994 4.95965 4.97366 5.09237 5.13969 5.17925 5.25906 5.41695 5.62383 5.71214 6.16390 6.47975 6.60196 6.75155 7.06323 7.22031 7.95393 8.08889 9.13038 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037888 B = 0.002771 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.833328 B =10101.012278 C =10239.019091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 N -0.341 5.341 4 N -0.383 5.383 5 C 0.095 3.905 6 C 0.071 3.929 7 C -0.242 4.242 8 C -0.041 4.041 9 C 0.521 3.479 10 O -0.589 6.589 11 N -0.615 5.615 12 C 0.107 3.893 13 C -0.145 4.145 14 C 0.169 3.831 15 H 0.067 0.933 16 N -0.745 5.745 17 C -0.325 4.325 18 H 0.076 0.924 19 C -0.108 4.108 20 N -0.979 5.979 21 Si 1.131 2.869 22 H -0.287 1.287 23 H -0.266 1.266 24 H -0.297 1.297 25 C 0.111 3.889 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.207 0.793 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.357 0.643 40 H 0.242 0.758 41 H 0.056 0.944 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.082 10.647 18.899 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 N -0.165 5.165 4 N -0.164 5.164 5 C -0.045 4.045 6 C -0.076 4.076 7 C -0.254 4.254 8 C -0.081 4.081 9 C 0.311 3.689 10 O -0.469 6.469 11 N -0.350 5.350 12 C -0.015 4.015 13 C -0.186 4.186 14 C 0.059 3.941 15 H 0.085 0.915 16 N -0.387 5.387 17 C -0.457 4.457 18 H 0.094 0.906 19 C -0.299 4.299 20 N -0.627 5.627 21 Si 0.956 3.044 22 H -0.214 1.214 23 H -0.191 1.191 24 H -0.224 1.224 25 C -0.014 4.014 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.224 0.776 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.189 0.811 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.526 11.340 17.703 26.135 hybrid contribution 0.579 0.716 -0.111 0.928 sum 16.105 12.056 17.592 26.725 Atomic orbital electron populations 1.20197 0.86171 1.02849 1.03818 1.22549 0.97680 0.90775 0.98393 1.77192 0.87946 1.23734 1.27667 1.48661 1.05604 1.05544 1.56633 1.22169 0.83024 0.95125 1.04163 1.22835 0.99816 0.85148 0.99828 1.19615 0.92554 0.95183 1.18006 1.19894 1.05179 0.92035 0.91019 1.21267 0.75605 0.79103 0.92881 1.90685 1.54354 1.53473 1.48351 1.48627 1.65704 1.12271 1.08364 1.22575 0.99615 0.88062 0.91241 1.23339 0.98491 1.00175 0.96591 1.21341 0.90009 0.92251 0.90453 0.91522 1.42601 1.36068 1.04471 1.55541 1.20401 1.14498 0.85039 1.25718 0.90634 1.27257 0.95651 1.09561 0.97388 1.70969 1.43776 0.99527 1.48433 0.82580 0.75523 0.69759 0.76531 1.21430 1.19130 1.22359 1.21891 0.98997 0.94576 0.85905 0.88265 0.91529 0.91348 0.90530 0.89083 0.86157 0.77623 0.86251 0.84858 0.87456 0.88406 0.92790 0.89360 0.81093 0.94717 0.92520 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.22 71.24 0.73 -0.88 16 2 C 0.07 1.91 7.22 43.10 0.31 2.22 16 3 N -0.34 -9.62 12.58 -47.39 -0.60 -10.22 16 4 N -0.38 -8.21 4.01 -369.56 -1.48 -9.70 16 5 C 0.09 1.07 11.47 127.77 1.47 2.53 16 6 C 0.07 1.38 11.40 83.54 0.95 2.33 16 7 C -0.24 -5.58 4.59 -20.15 -0.09 -5.68 16 8 C -0.04 -0.76 4.82 29.10 0.14 -0.62 16 9 C 0.52 15.03 7.84 87.66 0.69 15.72 16 10 O -0.59 -23.14 16.36 -3.02 -0.05 -23.19 16 11 N -0.62 -17.40 3.33 -811.80 -2.70 -20.10 16 12 C 0.11 2.19 6.69 86.85 0.58 2.77 16 13 C -0.15 -4.31 6.77 31.99 0.22 -4.10 16 14 C 0.17 6.37 3.59 46.18 0.17 6.53 16 15 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 16 N -0.75 -37.01 5.25 -317.34 -1.67 -38.67 16 17 C -0.33 -17.72 9.98 84.03 0.84 -16.88 16 18 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 20 N -0.98 -61.81 13.70 21.65 0.30 -61.51 16 21 Si 1.13 51.16 29.92 68.60 2.05 53.21 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.11 4.00 6.61 86.73 0.57 4.57 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.61 7.96 -2.39 -0.02 1.59 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.12 1.73 7.80 -2.39 -0.02 1.71 16 34 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.52 7.47 -2.39 -0.02 1.50 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.36 19.16 6.34 -92.71 -0.59 18.57 16 40 H 0.24 15.39 6.77 -92.71 -0.63 14.77 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 1.56 7.69 -2.39 -0.02 1.54 16 Total: -1.00 -82.86 352.64 3.46 -79.40 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.57 Total: 27.98 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 7.04 Total: 2.79 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -6.15 Total: -140.20 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.05 Total: 53.21 kcal Total: -82.86 3.46 -79.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968935534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.113 kcal (2) G-P(sol) polarization free energy of solvation -82.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds