Wall clock time and date at job start Tue Mar 31 2020 04:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35373 * 126.38311 * 2 1 4 4 C 1.41495 * 105.50100 * 180.14087 * 3 2 1 5 5 C 1.47710 * 126.51902 * 179.84546 * 4 3 2 6 6 O 1.21565 * 120.00080 * 359.71016 * 5 4 3 7 7 N 1.34784 * 119.99987 * 179.71236 * 5 4 3 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47706 * 34.99696 * 8 7 5 10 10 C 1.53005 * 109.47118 * 274.99773 * 8 7 5 11 11 C 1.53004 * 109.46982 * 155.00372 * 8 7 5 12 12 C 1.53944 * 113.73727 * 278.74049 * 11 8 7 13 13 N 1.47816 * 86.03487 * 222.08381 * 12 11 8 14 14 C 1.36939 * 134.45971 * 204.64478 * 13 12 11 15 15 H 1.07996 * 120.00665 * 179.86658 * 14 13 12 16 16 C 1.38819 * 119.99784 * 359.86523 * 14 13 12 17 17 N 1.31629 * 119.99868 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47152 * 59.99623 * 18 16 14 20 20 H 1.48496 * 109.47412 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46824 * 300.00046 * 18 16 14 22 22 C 1.47583 * 91.05319 * 24.54964 * 13 12 11 23 23 N 1.31810 * 106.96322 * 359.58239 * 4 3 2 24 24 N 1.28465 * 110.07656 * 0.26012 * 23 4 3 25 25 C 1.46494 * 124.88836 * 180.02562 * 24 23 4 26 26 H 1.09009 * 109.46940 * 270.32530 * 1 2 3 27 27 H 1.08994 * 109.46988 * 30.32078 * 1 2 3 28 28 H 1.08999 * 109.47107 * 150.32628 * 1 2 3 29 29 H 1.07998 * 127.25121 * 359.97438 * 3 2 1 30 30 H 0.96995 * 120.00015 * 359.72414 * 7 5 4 31 31 H 1.08997 * 109.47041 * 60.00616 * 10 8 7 32 32 H 1.09005 * 109.46855 * 180.02562 * 10 8 7 33 33 H 1.08996 * 109.47503 * 300.00392 * 10 8 7 34 34 H 1.08998 * 112.94289 * 50.32855 * 11 8 7 35 35 H 1.09004 * 113.77307 * 336.34244 * 12 11 8 36 36 H 1.08996 * 113.77420 * 107.74669 * 12 11 8 37 37 H 0.96994 * 119.99433 * 179.97438 * 17 16 14 38 38 H 1.08991 * 113.77031 * 221.15438 * 22 13 12 39 39 H 1.08996 * 113.87112 * 89.76232 * 22 13 12 40 40 H 1.09003 * 109.47678 * 90.02417 * 25 24 23 41 41 H 1.09004 * 109.47220 * 210.02937 * 25 24 23 42 42 H 1.09004 * 109.47290 * 330.02467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3101 1.0898 0.0000 4 6 3.6321 0.5855 -0.0034 5 6 4.8765 1.3813 -0.0079 6 8 4.8214 2.5957 -0.0143 7 7 6.0731 0.7610 -0.0049 8 6 7.3072 1.5503 -0.0099 9 1 7.1601 2.4586 0.5744 10 6 7.6685 1.9228 -1.4493 11 6 8.4415 0.7272 0.6039 12 6 8.4492 0.7337 2.1433 13 7 9.9153 0.8863 2.0331 14 6 10.9745 0.5900 2.8490 15 1 11.9821 0.8050 2.5255 16 6 10.7529 0.0134 4.0922 17 7 9.5247 -0.2482 4.4868 18 14 12.1975 -0.3901 5.2055 19 1 12.9461 0.8543 5.5156 20 1 11.6971 -0.9946 6.4663 21 1 13.0978 -1.3514 4.5194 22 6 9.7796 1.4836 0.6904 23 7 3.5420 -0.7295 0.0041 24 7 2.3081 -1.0870 0.0062 25 6 1.8377 -2.4744 0.0146 26 1 -0.3633 0.0058 1.0277 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5088 29 1 2.0058 2.1261 -0.0004 30 1 6.1171 -0.2079 0.0043 31 1 6.8605 2.5092 -1.8865 32 1 8.5870 2.5097 -1.4530 33 1 7.8157 1.0146 -2.0336 34 1 8.5276 -0.2685 0.1688 35 1 7.9493 1.5975 2.5815 36 1 8.1369 -0.2111 2.5882 37 1 9.3699 -0.6515 5.3553 38 1 10.5274 1.1364 -0.0225 39 1 9.6714 2.5681 0.6990 40 1 1.7205 -2.8122 1.0443 41 1 0.8785 -2.5359 -0.4994 42 1 2.5642 -3.1075 -0.4950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969361359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:01 Heat of formation + Delta-G solvation = 94.107422 kcal Electronic energy + Delta-G solvation = -23077.029114 eV Core-core repulsion = 19674.820798 eV Total energy + Delta-G solvation = -3402.208316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.75883 -39.43250 -37.87168 -34.66768 -33.73893 -32.83478 -32.08991 -30.35259 -27.71287 -27.44082 -27.07446 -24.83145 -24.02635 -23.05502 -21.18095 -20.78946 -19.79156 -18.70790 -17.22476 -16.68758 -16.54682 -16.36624 -15.81997 -14.82703 -14.60317 -14.35509 -14.09127 -13.81870 -13.57014 -13.39356 -13.29743 -13.08077 -12.85619 -12.71176 -12.49113 -12.31021 -11.99793 -11.57151 -11.24804 -11.20908 -10.89379 -10.84753 -10.67839 -10.28617 -10.00601 -9.71141 -9.66370 -9.32937 -9.20225 -9.02050 -8.73046 -8.64458 -6.80323 -5.69865 -3.02030 1.59932 2.03483 2.30862 3.42563 3.44077 3.47334 3.48750 3.62774 4.19072 4.40687 4.50849 4.68070 4.76838 4.80809 5.03147 5.16346 5.16581 5.35818 5.39141 5.41458 5.46040 5.56309 5.61352 5.76387 5.80657 5.91118 6.04745 6.13474 6.30474 6.36669 6.45366 6.50314 6.63111 6.68059 6.76425 6.92359 7.31979 7.45411 7.63739 7.68683 7.96711 8.04927 8.49143 9.11078 9.77455 10.67811 11.47065 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.003350 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.465394 B = 8356.374355 C = 9246.315644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.003 3.997 3 C -0.179 4.179 4 C -0.009 4.009 5 C 0.603 3.397 6 O -0.539 6.539 7 N -0.703 5.703 8 C 0.150 3.850 9 H 0.089 0.911 10 C -0.158 4.158 11 C -0.146 4.146 12 C 0.171 3.829 13 N -0.613 5.613 14 C -0.222 4.222 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.131 3.869 23 N -0.260 5.260 24 N -0.284 5.284 25 C 0.085 3.915 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.405 0.595 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.392 -3.431 -12.455 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.169 4.169 5 C 0.387 3.613 6 O -0.414 6.414 7 N -0.353 5.353 8 C 0.045 3.955 9 H 0.107 0.893 10 C -0.216 4.216 11 C -0.166 4.166 12 C 0.046 3.954 13 N -0.339 5.339 14 C -0.350 4.350 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.004 3.996 23 N -0.095 5.095 24 N -0.073 5.073 25 C -0.055 4.055 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.240 0.760 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.633 -3.783 -12.145 22.561 hybrid contribution 0.276 -0.037 0.803 0.850 sum -18.357 -3.820 -11.342 21.914 Atomic orbital electron populations 1.20330 0.86752 1.03648 1.03248 1.21385 0.95365 0.86802 1.08485 1.21515 0.90604 0.99532 1.09084 1.21994 0.95332 0.89653 1.09947 1.16872 0.81727 0.86370 0.76330 1.90769 1.86827 1.12901 1.50895 1.45949 1.05079 1.10856 1.73447 1.21132 0.82580 0.95245 0.96498 0.89342 1.22132 1.01675 1.01398 0.96419 1.23810 0.94006 0.99018 0.99774 1.22295 0.84638 0.99993 0.88518 1.45996 1.02411 1.70144 1.15385 1.18983 0.85809 1.33866 0.96352 0.90351 1.24788 0.96596 1.01689 0.97486 1.69823 1.18128 1.48151 1.20735 0.86207 0.81424 0.78081 0.80088 1.21226 1.21607 1.21143 1.22486 0.92976 0.95431 0.88695 1.73558 1.01606 1.15029 1.19340 1.45307 1.02868 1.07462 1.51623 1.22148 1.01414 0.77408 1.04537 0.90370 0.89637 0.91325 0.82149 0.76006 0.92717 0.91379 0.92748 0.89399 0.95577 0.91067 0.93687 0.93794 0.94716 0.89626 0.88846 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.10 36.01 0.36 -0.08 16 2 C 0.00 0.04 6.92 -82.20 -0.57 -0.53 16 3 C -0.18 -2.32 10.73 -39.36 -0.42 -2.75 16 4 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 5 C 0.60 10.38 7.79 -12.39 -0.10 10.29 16 6 O -0.54 -10.63 16.59 5.31 0.09 -10.55 16 7 N -0.70 -11.36 5.08 -54.79 -0.28 -11.64 16 8 C 0.15 2.53 2.38 -67.93 -0.16 2.37 16 9 H 0.09 1.68 7.41 -51.93 -0.39 1.30 16 10 C -0.16 -2.28 9.31 37.16 0.35 -1.93 16 11 C -0.15 -2.78 3.46 -89.69 -0.31 -3.09 16 12 C 0.17 4.18 7.08 -2.84 -0.02 4.16 16 13 N -0.61 -16.28 3.70 -177.71 -0.66 -16.94 16 14 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.27 5.50 -17.42 -0.10 -0.36 16 17 N -0.92 -28.11 11.39 55.49 0.63 -27.48 16 18 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.13 2.73 7.64 -2.96 -0.02 2.70 16 23 N -0.26 -3.61 11.67 33.42 0.39 -3.22 16 24 N -0.28 -3.02 3.70 -63.85 -0.24 -3.26 16 25 C 0.09 0.48 11.11 59.84 0.66 1.15 16 26 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.24 7.00 -51.93 -0.36 -0.12 16 29 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.41 6.09 8.33 -40.82 -0.34 5.75 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.93 7.52 -51.93 -0.39 0.53 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 36 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.25 6.95 -51.93 -0.36 -0.11 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -36.12 352.64 -7.25 -43.37 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.40 Total: 2.17 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.08 Total: 4.59 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.15 Total: -62.54 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.12 -7.25 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969361359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.477 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds