Wall clock time and date at job start Tue Mar 31 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39670 * 126.07158 * 2 1 4 4 C 1.38411 * 105.36030 * 180.09162 * 3 2 1 5 5 C 1.47164 * 126.88303 * 179.91651 * 4 3 2 6 6 O 1.21629 * 119.99863 * 184.82675 * 5 4 3 7 7 N 1.34779 * 120.00109 * 4.82701 * 5 4 3 8 8 C 1.46493 * 119.99915 * 175.13374 * 7 5 4 9 9 H 1.09000 * 109.47366 * 325.00378 * 8 7 5 10 10 C 1.52998 * 109.47285 * 85.00044 * 8 7 5 11 11 C 1.52998 * 109.47493 * 205.00243 * 8 7 5 12 12 C 1.53493 * 114.21137 * 180.02562 * 11 8 7 13 13 N 1.47065 * 87.98632 * 220.34547 * 12 11 8 14 14 C 1.36938 * 136.05520 * 207.08678 * 13 12 11 15 15 H 1.07997 * 120.00267 * 6.23422 * 14 13 12 16 16 C 1.38814 * 120.00045 * 186.23104 * 14 13 12 17 17 N 1.31616 * 120.00150 * 194.83374 * 16 14 13 18 18 Si 1.86806 * 119.99732 * 14.82888 * 16 14 13 19 19 H 1.48502 * 109.46920 * 270.00032 * 18 16 14 20 20 H 1.48498 * 109.46969 * 29.99983 * 18 16 14 21 21 H 1.48502 * 109.46981 * 150.00254 * 18 16 14 22 22 C 1.47068 * 87.88688 * 27.33946 * 13 12 11 23 23 N 1.36593 * 106.22828 * 359.64962 * 4 3 2 24 24 C 1.46507 * 125.18766 * 180.20585 * 23 4 3 25 25 N 1.28442 * 109.62301 * 0.22560 * 23 4 3 26 26 H 1.09001 * 109.47205 * 270.28914 * 1 2 3 27 27 H 1.08999 * 109.46956 * 30.28612 * 1 2 3 28 28 H 1.08998 * 109.47310 * 150.28609 * 1 2 3 29 29 H 1.08001 * 127.32041 * 359.96943 * 3 2 1 30 30 H 0.96999 * 119.99798 * 355.13659 * 7 5 4 31 31 H 1.09007 * 109.47421 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47100 * 300.00116 * 10 8 7 33 33 H 1.09003 * 109.47107 * 60.00107 * 10 8 7 34 34 H 1.09006 * 113.41147 * 313.20374 * 11 8 7 35 35 H 1.08995 * 113.46651 * 105.56295 * 12 11 8 36 36 H 1.09002 * 113.51884 * 335.13427 * 12 11 8 37 37 H 0.96997 * 120.00166 * 354.94827 * 17 16 14 38 38 H 1.08999 * 113.46291 * 87.43535 * 22 13 12 39 39 H 1.08997 * 113.46525 * 217.88016 * 22 13 12 40 40 H 1.08998 * 109.46707 * 91.02129 * 24 23 4 41 41 H 1.08997 * 109.47086 * 211.01693 * 24 23 4 42 42 H 1.09001 * 109.46923 * 331.02228 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6240 0.6394 -0.0021 5 6 4.8665 1.4281 -0.0047 6 8 5.9423 0.8678 -0.0951 7 7 4.8123 2.7712 0.0930 8 6 6.0496 3.5485 0.1979 9 1 6.7838 2.9868 0.7755 10 6 6.6021 3.8193 -1.2029 11 6 5.7592 4.8778 0.8974 12 6 6.9877 5.7827 1.0646 13 7 6.4926 6.1191 2.4079 14 6 6.6058 7.1830 3.2627 15 1 7.0984 8.0872 2.9371 16 6 6.0874 7.0991 4.5477 17 7 5.9294 8.1906 5.2661 18 14 5.6139 5.4372 5.2571 19 1 4.1942 5.1468 4.9328 20 1 6.4811 4.3837 4.6712 21 1 5.7902 5.4600 6.7315 22 6 5.8276 4.8076 2.4319 23 7 3.5173 -0.7223 0.0047 24 6 4.6450 -1.6575 0.0096 25 7 2.2774 -1.0578 0.0059 26 1 -0.3634 0.0052 1.0277 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3634 -0.8925 -0.5094 29 1 2.0207 2.1639 -0.0005 30 1 3.9541 3.2232 0.0940 31 1 7.5225 4.3981 -1.1249 32 1 6.8090 2.8723 -1.7013 33 1 5.8680 4.3811 -1.7806 34 1 4.8780 5.3884 0.5087 35 1 6.9981 6.6313 0.3807 36 1 7.9316 5.2375 1.0738 37 1 6.2424 9.0438 4.9272 38 1 6.4651 4.0045 2.8015 39 1 4.8496 4.8256 2.9127 40 1 4.9128 -1.8983 1.0384 41 1 4.3625 -2.5700 -0.5153 42 1 5.4986 -1.2000 -0.4905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969365299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:05 Heat of formation + Delta-G solvation = 98.721030 kcal Electronic energy + Delta-G solvation = -23408.913288 eV Core-core repulsion = 20006.905033 eV Total energy + Delta-G solvation = -3402.008255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72199 -39.88450 -38.51349 -35.28242 -34.13128 -32.57271 -31.75604 -30.01103 -29.87529 -27.78282 -25.76707 -25.43547 -24.31389 -23.09558 -21.52100 -20.62872 -20.08470 -19.16102 -17.79875 -17.47823 -16.57602 -16.41839 -15.97171 -15.22595 -14.80473 -14.69437 -14.15180 -13.88826 -13.76205 -13.70132 -13.41450 -13.27793 -13.04938 -12.68421 -12.52309 -12.45221 -12.30428 -11.95322 -11.85410 -11.54156 -10.97778 -10.88163 -10.75109 -10.45085 -10.16936 -10.01214 -9.51931 -9.36570 -9.19880 -9.06963 -9.02499 -8.71621 -7.20090 -6.32524 -3.24142 1.09226 2.18598 2.34818 3.04626 3.12490 3.39852 3.47564 3.61505 4.24188 4.37490 4.57590 4.66264 4.79762 4.87088 4.94218 5.01342 5.06793 5.16320 5.32751 5.37310 5.39489 5.42203 5.42994 5.52348 5.61302 5.70594 5.76292 5.81543 5.95658 6.10739 6.20836 6.24280 6.28209 6.30336 6.36231 6.49750 6.54249 6.88659 7.10342 7.33745 7.86464 8.01824 8.22078 8.95747 9.49029 10.35182 11.17940 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.003989 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.860726 B = 7018.113922 C = 7748.921066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.022 3.978 3 C -0.187 4.187 4 C -0.034 4.034 5 C 0.592 3.408 6 O -0.543 6.543 7 N -0.703 5.703 8 C 0.155 3.845 9 H 0.091 0.909 10 C -0.159 4.159 11 C -0.140 4.140 12 C 0.132 3.868 13 N -0.625 5.625 14 C -0.306 4.306 15 H 0.082 0.918 16 C -0.023 4.023 17 N -0.932 5.932 18 Si 1.061 2.939 19 H -0.294 1.294 20 H -0.282 1.282 21 H -0.295 1.295 22 C 0.108 3.892 23 N -0.258 5.258 24 C 0.083 3.917 25 N -0.280 5.280 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.404 0.596 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -17.123 -14.661 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C -0.216 4.216 4 C -0.162 4.162 5 C 0.377 3.623 6 O -0.422 6.422 7 N -0.353 5.353 8 C 0.050 3.950 9 H 0.109 0.891 10 C -0.217 4.217 11 C -0.160 4.160 12 C 0.005 3.995 13 N -0.352 5.352 14 C -0.432 4.432 15 H 0.100 0.900 16 C -0.222 4.222 17 N -0.574 5.574 18 Si 0.893 3.107 19 H -0.221 1.221 20 H -0.208 1.208 21 H -0.223 1.223 22 C -0.018 4.018 23 N -0.045 5.045 24 C -0.057 4.057 25 N -0.114 5.114 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.179 0.821 30 H 0.239 0.761 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.851 -19.279 -13.194 24.345 hybrid contribution 0.471 1.776 -1.183 2.185 sum -6.380 -17.503 -14.377 23.532 Atomic orbital electron populations 1.20089 0.86368 1.03144 1.02888 1.22010 0.97150 0.88786 1.05504 1.22147 0.90290 1.00405 1.08731 1.21446 0.95817 0.85358 1.13600 1.16895 0.86434 0.82376 0.76600 1.90762 1.29871 1.70837 1.50684 1.45822 1.10885 1.05239 1.73344 1.21095 0.85426 0.91500 0.96933 0.89093 1.22128 1.01534 1.01851 0.96199 1.23567 1.01268 0.94209 0.96944 1.22270 0.93573 0.94945 0.88748 1.46192 1.58284 1.13985 1.16779 1.20146 1.38638 0.90431 0.94009 0.89988 1.25733 0.98995 1.04812 0.92653 1.70898 1.46233 0.98637 1.41664 0.83800 0.76074 0.75075 0.75771 1.22130 1.20830 1.22251 1.22749 0.96999 0.89471 0.92566 1.45529 1.05099 1.04352 1.49522 1.22392 0.85925 0.92553 1.04797 1.73123 0.89499 1.27931 1.20857 0.90742 0.90458 0.91094 0.82094 0.76132 0.91089 0.92394 0.92418 0.88221 0.93402 0.94481 0.92837 0.93769 0.93152 0.89790 0.89002 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.12 16 2 C 0.02 0.24 7.22 -82.47 -0.60 -0.36 16 3 C -0.19 -2.01 10.44 -38.98 -0.41 -2.42 16 4 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 5 C 0.59 7.87 7.75 -12.64 -0.10 7.77 16 6 O -0.54 -8.37 14.33 5.25 0.08 -8.29 16 7 N -0.70 -8.39 5.07 -54.97 -0.28 -8.67 16 8 C 0.15 2.06 2.43 -67.94 -0.17 1.89 16 9 H 0.09 1.38 7.40 -51.93 -0.38 0.99 16 10 C -0.16 -1.84 9.29 37.16 0.35 -1.49 16 11 C -0.14 -2.19 3.67 -89.97 -0.33 -2.52 16 12 C 0.13 2.45 7.33 -8.50 -0.06 2.39 16 13 N -0.62 -15.10 3.64 -184.59 -0.67 -15.77 16 14 C -0.31 -8.78 11.04 -15.06 -0.17 -8.94 16 15 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 16 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 17 N -0.93 -29.42 13.70 55.49 0.76 -28.66 16 18 Si 1.06 26.78 25.47 -169.99 -4.33 22.45 16 19 H -0.29 -7.07 6.97 56.52 0.39 -6.68 16 20 H -0.28 -6.67 5.60 56.52 0.32 -6.35 16 21 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 22 C 0.11 2.21 5.18 -8.36 -0.04 2.16 16 23 N -0.26 -3.19 3.75 -63.88 -0.24 -3.43 16 24 C 0.08 0.79 10.91 59.85 0.65 1.44 16 25 N -0.28 -3.54 11.90 33.64 0.40 -3.14 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.16 1.28 7.58 -52.49 -0.40 0.88 16 30 H 0.40 3.94 7.63 -40.82 -0.31 3.63 16 31 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 38 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 39 H 0.05 1.07 6.06 -51.93 -0.31 0.75 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.11 1.14 6.16 -51.93 -0.32 0.82 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -35.08 342.99 -6.64 -41.71 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.36 Total: 0.58 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.16 Total: -1.96 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.03 Total: -59.66 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.33 Total: 22.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.08 -6.64 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969365299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.436 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds