Wall clock time and date at job start Tue Mar 31 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39670 * 126.07158 * 2 1 4 4 C 1.38411 * 105.36030 * 180.09162 * 3 2 1 5 5 C 1.47164 * 126.88303 * 179.91651 * 4 3 2 6 6 O 1.21629 * 119.99863 * 184.82675 * 5 4 3 7 7 N 1.34779 * 120.00109 * 4.82701 * 5 4 3 8 8 C 1.46493 * 119.99915 * 175.13374 * 7 5 4 9 9 H 1.09000 * 109.47366 * 325.00378 * 8 7 5 10 10 C 1.52998 * 109.47285 * 85.00044 * 8 7 5 11 11 C 1.52998 * 109.47493 * 205.00243 * 8 7 5 12 12 C 1.53493 * 114.21137 * 180.02562 * 11 8 7 13 13 N 1.47065 * 87.98632 * 220.34547 * 12 11 8 14 14 C 1.36938 * 136.05520 * 207.08678 * 13 12 11 15 15 H 1.07997 * 120.00267 * 6.23422 * 14 13 12 16 16 C 1.38814 * 120.00045 * 186.23104 * 14 13 12 17 17 N 1.31616 * 120.00150 * 194.83374 * 16 14 13 18 18 Si 1.86806 * 119.99732 * 14.82888 * 16 14 13 19 19 H 1.48502 * 109.46920 * 270.00032 * 18 16 14 20 20 H 1.48498 * 109.46969 * 29.99983 * 18 16 14 21 21 H 1.48502 * 109.46981 * 150.00254 * 18 16 14 22 22 C 1.47068 * 87.88688 * 27.33946 * 13 12 11 23 23 N 1.36593 * 106.22828 * 359.64962 * 4 3 2 24 24 C 1.46507 * 125.18766 * 180.20585 * 23 4 3 25 25 N 1.28442 * 109.62301 * 0.22560 * 23 4 3 26 26 H 1.09001 * 109.47205 * 270.28914 * 1 2 3 27 27 H 1.08999 * 109.46956 * 30.28612 * 1 2 3 28 28 H 1.08998 * 109.47310 * 150.28609 * 1 2 3 29 29 H 1.08001 * 127.32041 * 359.96943 * 3 2 1 30 30 H 0.96999 * 119.99798 * 355.13659 * 7 5 4 31 31 H 1.09007 * 109.47421 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47100 * 300.00116 * 10 8 7 33 33 H 1.09003 * 109.47107 * 60.00107 * 10 8 7 34 34 H 1.09006 * 113.41147 * 313.20374 * 11 8 7 35 35 H 1.08995 * 113.46651 * 105.56295 * 12 11 8 36 36 H 1.09002 * 113.51884 * 335.13427 * 12 11 8 37 37 H 0.96997 * 120.00166 * 354.94827 * 17 16 14 38 38 H 1.08999 * 113.46291 * 87.43535 * 22 13 12 39 39 H 1.08997 * 113.46525 * 217.88016 * 22 13 12 40 40 H 1.08998 * 109.46707 * 91.02129 * 24 23 4 41 41 H 1.08997 * 109.47086 * 211.01693 * 24 23 4 42 42 H 1.09001 * 109.46923 * 331.02228 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6240 0.6394 -0.0021 5 6 4.8665 1.4281 -0.0047 6 8 5.9423 0.8678 -0.0951 7 7 4.8123 2.7712 0.0930 8 6 6.0496 3.5485 0.1979 9 1 6.7838 2.9868 0.7755 10 6 6.6021 3.8193 -1.2029 11 6 5.7592 4.8778 0.8974 12 6 6.9877 5.7827 1.0646 13 7 6.4926 6.1191 2.4079 14 6 6.6058 7.1830 3.2627 15 1 7.0984 8.0872 2.9371 16 6 6.0874 7.0991 4.5477 17 7 5.9294 8.1906 5.2661 18 14 5.6139 5.4372 5.2571 19 1 4.1942 5.1468 4.9328 20 1 6.4811 4.3837 4.6712 21 1 5.7902 5.4600 6.7315 22 6 5.8276 4.8076 2.4319 23 7 3.5173 -0.7223 0.0047 24 6 4.6450 -1.6575 0.0096 25 7 2.2774 -1.0578 0.0059 26 1 -0.3634 0.0052 1.0277 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3634 -0.8925 -0.5094 29 1 2.0207 2.1639 -0.0005 30 1 3.9541 3.2232 0.0940 31 1 7.5225 4.3981 -1.1249 32 1 6.8090 2.8723 -1.7013 33 1 5.8680 4.3811 -1.7806 34 1 4.8780 5.3884 0.5087 35 1 6.9981 6.6313 0.3807 36 1 7.9316 5.2375 1.0738 37 1 6.2424 9.0438 4.9272 38 1 6.4651 4.0045 2.8015 39 1 4.8496 4.8256 2.9127 40 1 4.9128 -1.8983 1.0384 41 1 4.3625 -2.5700 -0.5153 42 1 5.4986 -1.2000 -0.4905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969365299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:04 Heat of formation + Delta-G solvation = 73.074699 kcal Electronic energy + Delta-G solvation = -23410.025397 eV Core-core repulsion = 20006.905033 eV Total energy + Delta-G solvation = -3403.120364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.55758 -41.07889 -39.88657 -36.45469 -34.96774 -34.51237 -32.91316 -31.08210 -30.53699 -29.46339 -27.02544 -26.45433 -25.59046 -24.39254 -22.71951 -21.69226 -21.41766 -20.31388 -19.52798 -18.72484 -17.57289 -17.34739 -16.98538 -16.94928 -15.98923 -15.77815 -15.65459 -15.26939 -15.11923 -14.70872 -14.36686 -14.32618 -14.10781 -13.63709 -13.32826 -13.27051 -13.22652 -13.19539 -13.11094 -13.07314 -12.60124 -12.47289 -11.89050 -11.73486 -11.69263 -11.45245 -11.18963 -10.97073 -10.84130 -10.34582 -10.01028 -9.82821 -9.23543 -8.62217 -5.45733 0.19352 1.36411 1.37316 1.48933 1.54165 1.63334 2.10344 2.18250 2.51370 3.01821 3.15987 3.38583 3.52277 3.59662 3.85433 4.05867 4.21327 4.27050 4.32780 4.36583 4.42400 4.47427 4.61496 4.62650 4.66585 4.67955 4.71663 4.82112 4.88632 4.91394 5.00921 5.05502 5.15576 5.21242 5.31866 5.39620 5.51837 5.58021 5.75775 5.96335 6.40052 6.70821 7.00592 7.08797 7.34065 8.28892 8.90069 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.003989 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.860726 B = 7018.113922 C = 7748.921066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.012 3.988 3 C -0.180 4.180 4 C -0.055 4.055 5 C 0.593 3.407 6 O -0.569 6.569 7 N -0.694 5.694 8 C 0.165 3.835 9 H 0.075 0.925 10 C -0.153 4.153 11 C -0.102 4.102 12 C 0.128 3.872 13 N -0.659 5.659 14 C -0.291 4.291 15 H 0.052 0.948 16 C -0.082 4.082 17 N -0.970 5.970 18 Si 1.099 2.901 19 H -0.274 1.274 20 H -0.260 1.260 21 H -0.304 1.304 22 C 0.097 3.903 23 N -0.269 5.269 24 C 0.080 3.920 25 N -0.301 5.301 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.189 0.811 30 H 0.416 0.584 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.247 0.753 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -18.713 -16.362 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C -0.209 4.209 4 C -0.183 4.183 5 C 0.379 3.621 6 O -0.449 6.449 7 N -0.345 5.345 8 C 0.060 3.940 9 H 0.093 0.907 10 C -0.211 4.211 11 C -0.122 4.122 12 C 0.003 3.997 13 N -0.387 5.387 14 C -0.419 4.419 15 H 0.070 0.930 16 C -0.274 4.274 17 N -0.616 5.616 18 Si 0.925 3.075 19 H -0.200 1.200 20 H -0.185 1.185 21 H -0.233 1.233 22 C -0.027 4.027 23 N -0.057 5.057 24 C -0.059 4.059 25 N -0.136 5.136 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.207 0.793 30 H 0.254 0.746 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.231 -20.890 -14.961 26.981 hybrid contribution 0.937 2.279 -0.763 2.579 sum -7.294 -18.611 -15.724 25.433 Atomic orbital electron populations 1.20222 0.84109 1.04334 1.03701 1.22645 0.98663 0.88511 1.04589 1.22556 0.89425 1.01726 1.07212 1.21502 0.96048 0.85680 1.15069 1.16996 0.86393 0.82578 0.76086 1.90752 1.30871 1.71370 1.51931 1.45660 1.11063 1.04853 1.72921 1.20858 0.85668 0.89910 0.97584 0.90707 1.22069 1.02133 1.01996 0.94871 1.23248 1.00426 0.94858 0.93689 1.22502 0.95311 0.95981 0.85950 1.46303 1.59859 1.14460 1.18068 1.20027 1.36239 0.91099 0.94536 0.93002 1.26937 1.00017 1.06901 0.93568 1.70998 1.49043 0.98801 1.42732 0.83335 0.77353 0.72197 0.74622 1.20044 1.18537 1.23261 1.22959 0.96258 0.87439 0.96074 1.45789 1.05451 1.04699 1.49718 1.22494 0.85230 0.92874 1.05302 1.73118 0.89858 1.28961 1.21621 0.90023 0.88398 0.90818 0.79335 0.74621 0.90653 0.92790 0.90723 0.86301 0.92496 0.93167 0.94323 0.93710 0.93550 0.89309 0.87177 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 71.24 0.74 -0.05 16 2 C 0.01 0.23 7.22 43.05 0.31 0.55 16 3 C -0.18 -3.37 10.44 22.66 0.24 -3.13 16 4 C -0.05 -1.25 6.96 40.79 0.28 -0.97 16 5 C 0.59 14.55 7.75 86.59 0.67 15.22 16 6 O -0.57 -16.78 14.33 -4.12 -0.06 -16.84 16 7 N -0.69 -14.39 5.07 -446.07 -2.26 -16.65 16 8 C 0.16 3.86 2.43 44.99 0.11 3.97 16 9 H 0.07 2.07 7.40 -2.39 -0.02 2.06 16 10 C -0.15 -3.01 9.29 71.98 0.67 -2.34 16 11 C -0.10 -2.87 3.67 -10.37 -0.04 -2.91 16 12 C 0.13 4.45 7.33 83.18 0.61 5.05 16 13 N -0.66 -30.93 3.64 -737.91 -2.69 -33.61 16 14 C -0.29 -16.86 11.04 84.03 0.93 -15.93 16 15 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 16 C -0.08 -4.91 5.50 84.86 0.47 -4.45 16 17 N -0.97 -62.89 13.70 21.65 0.30 -62.59 16 18 Si 1.10 53.73 25.47 68.60 1.75 55.48 16 19 H -0.27 -12.40 6.97 99.48 0.69 -11.71 16 20 H -0.26 -11.62 5.60 99.48 0.56 -11.07 16 21 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 22 C 0.10 3.74 5.18 83.27 0.43 4.17 16 23 N -0.27 -6.29 3.75 -356.01 -1.33 -7.63 16 24 C 0.08 1.45 10.91 127.77 1.39 2.84 16 25 N -0.30 -7.13 11.90 -47.50 -0.57 -7.70 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.19 2.22 7.58 -2.91 -0.02 2.20 16 30 H 0.42 6.49 7.63 -92.71 -0.71 5.78 16 31 H 0.07 1.44 7.48 -2.38 -0.02 1.42 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 2.95 8.14 -2.38 -0.02 2.94 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.25 16.06 8.73 -92.71 -0.81 15.25 16 38 H 0.05 1.75 6.85 -2.39 -0.02 1.73 16 39 H 0.05 1.83 6.06 -2.39 -0.01 1.81 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 2.08 6.16 -2.39 -0.01 2.06 16 Total: -1.00 -77.20 342.99 2.07 -75.12 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.12 Total: 12.39 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.82 Total: 2.02 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -6.55 Total: -128.18 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.06 Total: -16.84 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 1.75 Total: 55.48 kcal Total: -77.20 2.07 -75.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969365299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.199 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds