Wall clock time and date at job start Tue Mar 31 2020 04:00:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30447 * 125.98561 * 2 1
4 4 N 1.39940 * 108.89392 * 180.02562 * 3 2 1
5 5 C 1.46499 * 125.75300 * 179.97438 * 4 3 2
6 6 C 1.34257 * 108.49021 * 0.26635 * 4 3 2
7 7 C 1.38046 * 107.41948 * 359.58225 * 6 4 3
8 8 C 1.47428 * 126.41511 * 180.12346 * 7 6 4
9 9 O 1.21602 * 119.99774 * 180.34155 * 8 7 6
10 10 N 1.34776 * 120.00262 * 0.34540 * 8 7 6
11 11 C 1.46497 * 120.00059 * 180.02562 * 10 8 7
12 12 H 1.09005 * 109.46887 * 324.99631 * 11 10 8
13 13 C 1.52994 * 109.47105 * 84.99575 * 11 10 8
14 14 C 1.53002 * 109.47007 * 204.99806 * 11 10 8
15 15 C 1.53946 * 113.74101 * 161.81989 * 14 11 10
16 16 N 1.47810 * 86.03583 * 222.08198 * 15 14 11
17 17 C 1.36938 * 134.46069 * 204.64432 * 16 15 14
18 18 H 1.07998 * 120.00504 * 179.86986 * 17 16 15
19 19 C 1.38816 * 119.99748 * 359.86804 * 17 16 15
20 20 N 1.31621 * 119.99704 * 0.02562 * 19 17 16
21 21 Si 1.86797 * 120.00204 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47079 * 90.00011 * 21 19 17
23 23 H 1.48497 * 109.47140 * 210.00240 * 21 19 17
24 24 H 1.48502 * 109.46972 * 330.00094 * 21 19 17
25 25 C 1.47588 * 91.05415 * 24.55231 * 16 15 14
26 26 H 1.09003 * 109.47222 * 89.97197 * 1 2 3
27 27 H 1.08999 * 109.47080 * 209.97627 * 1 2 3
28 28 H 1.09004 * 109.47263 * 329.97678 * 1 2 3
29 29 H 1.09002 * 109.46961 * 90.02974 * 5 4 3
30 30 H 1.09003 * 109.47179 * 210.02582 * 5 4 3
31 31 H 1.08994 * 109.47232 * 330.02917 * 5 4 3
32 32 H 1.08006 * 126.29207 * 179.73344 * 6 4 3
33 33 H 0.97001 * 119.99753 * 359.97438 * 10 8 7
34 34 H 1.09000 * 109.47326 * 300.07085 * 13 11 10
35 35 H 1.09005 * 109.47296 * 60.07770 * 13 11 10
36 36 H 1.09008 * 109.47059 * 180.02562 * 13 11 10
37 37 H 1.09004 * 112.94275 * 293.41612 * 14 11 10
38 38 H 1.08994 * 113.77085 * 336.34952 * 15 14 11
39 39 H 1.08996 * 113.76834 * 107.74613 * 15 14 11
40 40 H 0.97001 * 119.99649 * 179.97438 * 20 19 17
41 41 H 1.08994 * 113.76946 * 221.15262 * 25 16 15
42 42 H 1.08993 * 113.87144 * 89.76462 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2735 1.0555 0.0000
4 7 3.6111 0.6442 -0.0006
5 6 4.7787 1.5291 -0.0013
6 6 3.6439 -0.6979 -0.0069
7 6 2.3372 -1.1432 -0.0007
8 6 1.8915 -2.5485 -0.0017
9 8 0.7039 -2.8097 -0.0020
10 7 2.8004 -3.5438 -0.0022
11 6 2.3575 -4.9402 -0.0038
12 1 1.4449 -5.0326 0.5852
13 6 2.0840 -5.3869 -1.4413
14 6 3.4492 -5.8222 0.6055
15 6 2.9471 -7.2044 1.0608
16 7 3.7885 -7.0016 2.2589
17 6 4.3930 -7.8379 3.1591
18 1 4.9740 -7.4275 3.9718
19 6 4.2591 -9.2133 3.0271
20 7 3.5515 -9.7134 2.0364
21 14 5.0843 -10.3542 4.2546
22 1 4.1565 -10.6219 5.3827
23 1 5.4319 -11.6333 3.5852
24 1 6.3205 -9.7142 4.7716
25 6 3.7176 -5.5367 2.0943
26 1 -0.3634 0.0005 -1.0277
27 1 -0.3633 -0.8902 0.5135
28 1 -0.3634 0.8898 0.5142
29 1 5.0691 1.7482 1.0262
30 1 5.6054 1.0393 -0.5159
31 1 4.5304 2.4579 -0.5147
32 1 4.5298 -1.3157 -0.0129
33 1 3.7477 -3.3354 -0.0023
34 1 1.3072 -4.7577 -1.8757
35 1 2.9969 -5.2958 -2.0300
36 1 1.7540 -6.4258 -1.4424
37 1 4.3524 -5.8620 -0.0035
38 1 1.8787 -7.2353 1.2743
39 1 3.2785 -8.0240 0.4233
40 1 3.4582 -10.6745 1.9440
41 1 4.6631 -5.0274 2.2805
42 1 2.8767 -5.0749 2.6117
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000969394773.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:00:17
Heat of formation + Delta-G solvation = 89.997273 kcal
Electronic energy + Delta-G solvation = -23169.821328 eV
Core-core repulsion = 19767.434782 eV
Total energy + Delta-G solvation = -3402.386546 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.55653 -39.35976 -37.84672 -34.79316 -34.07173 -32.24210 -31.32374 -29.79339
-29.39108 -27.44283 -26.12752 -24.75081 -24.01344 -22.70128 -21.29931 -20.10533
-19.94753 -19.03898 -17.60343 -16.73761 -16.09268 -15.98509 -15.69558 -14.79325
-14.68944 -14.37280 -14.04991 -13.91539 -13.58114 -13.45870 -13.32431 -13.04619
-12.73944 -12.36777 -12.26073 -12.10440 -11.97571 -11.53900 -11.36982 -11.18526
-11.00939 -10.86721 -10.63543 -10.31578 -9.99313 -9.78608 -9.55979 -9.51208
-9.37174 -8.91208 -8.77625 -8.61377 -6.84940 -5.74852 -3.06732 1.35288
2.08641 2.12170 3.40006 3.44359 3.45505 3.46777 3.58214 4.12530
4.38469 4.47013 4.68582 4.75137 5.00213 5.03082 5.13703 5.19596
5.31740 5.35997 5.44589 5.59164 5.64582 5.71977 5.82114 5.88046
5.93259 6.05884 6.14860 6.34208 6.39863 6.44237 6.50519 6.56764
6.65275 6.69737 6.89913 7.25526 7.39780 7.40389 7.58506 7.80270
8.00436 8.51018 9.06767 9.72974 10.62772 11.42399
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.024820 B = 0.003177 C = 0.002982
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.867732 B = 8810.012998 C = 9388.478831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.132 3.868
3 N -0.306 5.306
4 N -0.364 5.364
5 C 0.097 3.903
6 C 0.099 3.901
7 C -0.284 4.284
8 C 0.592 3.408
9 O -0.544 6.544
10 N -0.718 5.718
11 C 0.153 3.847
12 H 0.088 0.912
13 C -0.157 4.157
14 C -0.147 4.147
15 C 0.176 3.824
16 N -0.613 5.613
17 C -0.223 4.223
18 H 0.079 0.921
19 C -0.008 4.008
20 N -0.921 5.921
21 Si 0.911 3.089
22 H -0.289 1.289
23 H -0.290 1.290
24 H -0.281 1.281
25 C 0.126 3.874
26 H 0.078 0.922
27 H 0.097 0.903
28 H 0.069 0.931
29 H 0.079 0.921
30 H 0.091 0.909
31 H 0.091 0.909
32 H 0.183 0.817
33 H 0.393 0.607
34 H 0.054 0.946
35 H 0.052 0.948
36 H 0.069 0.931
37 H 0.087 0.913
38 H 0.029 0.971
39 H 0.074 0.926
40 H 0.253 0.747
41 H 0.039 0.961
42 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.731 20.700 -7.906 22.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.036 4.036
3 N -0.129 5.129
4 N -0.142 5.142
5 C -0.044 4.044
6 C -0.053 4.053
7 C -0.299 4.299
8 C 0.379 3.621
9 O -0.423 6.423
10 N -0.368 5.368
11 C 0.048 3.952
12 H 0.106 0.894
13 C -0.216 4.216
14 C -0.167 4.167
15 C 0.050 3.950
16 N -0.339 5.339
17 C -0.351 4.351
18 H 0.096 0.904
19 C -0.205 4.205
20 N -0.568 5.568
21 Si 0.742 3.258
22 H -0.216 1.216
23 H -0.216 1.216
24 H -0.207 1.207
25 C 0.000 4.000
26 H 0.097 0.903
27 H 0.116 0.884
28 H 0.088 0.912
29 H 0.098 0.902
30 H 0.109 0.891
31 H 0.110 0.890
32 H 0.200 0.800
33 H 0.226 0.774
34 H 0.073 0.927
35 H 0.071 0.929
36 H 0.088 0.912
37 H 0.105 0.895
38 H 0.046 0.954
39 H 0.093 0.907
40 H 0.064 0.936
41 H 0.057 0.943
42 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 1.156 21.557 -7.755 22.939
hybrid contribution 1.118 -1.403 0.766 1.950
sum 2.274 20.155 -6.989 21.453
Atomic orbital electron populations
1.20348 0.85646 1.04086 1.03484 1.22486 0.97286 0.88774 0.95020
1.77180 0.85948 1.22714 1.27014 1.48275 1.06135 1.04774 1.55044
1.21975 0.83800 0.94690 1.03889 1.23116 0.99082 0.85213 0.97864
1.20371 0.91995 0.94841 1.22666 1.17212 0.85767 0.83346 0.75742
1.90729 1.16316 1.84209 1.50999 1.45960 1.09116 1.06364 1.75319
1.21082 0.98710 0.78715 0.96684 0.89388 1.22108 1.01287 1.01932
0.96240 1.23842 0.97844 0.98654 0.96320 1.22226 0.93392 0.91751
0.87649 1.46003 1.57285 0.99587 1.31027 1.19024 1.23991 0.87024
1.05039 0.90367 1.24777 1.00463 0.96468 0.98773 1.69811 1.43927
1.11364 1.31715 0.86134 0.78860 0.80467 0.80379 1.21641 1.21636
1.20684 1.22528 0.97689 0.87819 0.92000 0.90294 0.88397 0.91240
0.90232 0.89052 0.88994 0.79981 0.77352 0.92735 0.92931 0.91193
0.89454 0.95373 0.90744 0.93647 0.94321 0.94958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.88 9.92 36.01 0.36 -0.52 16
2 C 0.13 1.72 7.26 -82.02 -0.60 1.12 16
3 N -0.31 -3.84 12.50 33.90 0.42 -3.42 16
4 N -0.36 -3.48 3.98 -67.60 -0.27 -3.75 16
5 C 0.10 0.46 11.44 59.85 0.68 1.15 16
6 C 0.10 0.92 10.99 -16.56 -0.18 0.74 16
7 C -0.28 -3.59 6.13 -105.07 -0.64 -4.24 16
8 C 0.59 8.65 7.78 -12.52 -0.10 8.55 16
9 O -0.54 -9.65 14.58 5.28 0.08 -9.57 16
10 N -0.72 -9.38 4.93 -54.88 -0.27 -9.65 16
11 C 0.15 2.35 2.29 -67.93 -0.16 2.20 16
12 H 0.09 1.58 7.48 -51.93 -0.39 1.19 16
13 C -0.16 -2.22 9.44 37.15 0.35 -1.87 16
14 C -0.15 -2.59 3.35 -89.69 -0.30 -2.89 16
15 C 0.18 4.06 6.98 -2.84 -0.02 4.04 16
16 N -0.61 -15.73 3.70 -177.71 -0.66 -16.38 16
17 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16
18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16
20 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16
21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16
22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
25 C 0.13 2.53 8.38 -2.96 -0.02 2.50 16
26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.10 1.26 6.55 -51.93 -0.34 0.91 16
28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16
31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.18 0.99 7.46 -52.48 -0.39 0.60 16
33 H 0.39 4.05 7.53 -40.82 -0.31 3.74 16
34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
36 H 0.07 1.01 8.09 -51.92 -0.42 0.59 16
37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
38 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16
39 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16
40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16
LS Contribution 351.93 15.07 5.30 5.30
Total: -1.00 -35.55 351.93 -7.08 -42.63
By element:
Atomic # 1 Polarization: 6.80 SS G_CDS: -6.41 Total: 0.39 kcal
Atomic # 6 Polarization: 4.87 SS G_CDS: -0.88 Total: 3.98 kcal
Atomic # 7 Polarization: -59.76 SS G_CDS: -0.14 Total: -59.90 kcal
Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -35.55 -7.08 -42.63 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969394773.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.623 kcal
(2) G-P(sol) polarization free energy of solvation -35.549 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds