Wall clock time and date at job start Tue Mar 31 2020 04:00:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30447 * 125.98561 * 2 1
4 4 N 1.39940 * 108.89392 * 180.02562 * 3 2 1
5 5 C 1.46499 * 125.75300 * 179.97438 * 4 3 2
6 6 C 1.34257 * 108.49021 * 0.26635 * 4 3 2
7 7 C 1.38046 * 107.41948 * 359.58225 * 6 4 3
8 8 C 1.47428 * 126.41511 * 180.12346 * 7 6 4
9 9 O 1.21602 * 119.99774 * 180.34155 * 8 7 6
10 10 N 1.34776 * 120.00262 * 0.34540 * 8 7 6
11 11 C 1.46497 * 120.00059 * 180.02562 * 10 8 7
12 12 H 1.09005 * 109.46887 * 324.99631 * 11 10 8
13 13 C 1.52994 * 109.47105 * 84.99575 * 11 10 8
14 14 C 1.53002 * 109.47007 * 204.99806 * 11 10 8
15 15 C 1.53946 * 113.74101 * 161.81989 * 14 11 10
16 16 N 1.47810 * 86.03583 * 222.08198 * 15 14 11
17 17 C 1.36938 * 134.46069 * 204.64432 * 16 15 14
18 18 H 1.07998 * 120.00504 * 179.86986 * 17 16 15
19 19 C 1.38816 * 119.99748 * 359.86804 * 17 16 15
20 20 N 1.31621 * 119.99704 * 0.02562 * 19 17 16
21 21 Si 1.86797 * 120.00204 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47079 * 90.00011 * 21 19 17
23 23 H 1.48497 * 109.47140 * 210.00240 * 21 19 17
24 24 H 1.48502 * 109.46972 * 330.00094 * 21 19 17
25 25 C 1.47588 * 91.05415 * 24.55231 * 16 15 14
26 26 H 1.09003 * 109.47222 * 89.97197 * 1 2 3
27 27 H 1.08999 * 109.47080 * 209.97627 * 1 2 3
28 28 H 1.09004 * 109.47263 * 329.97678 * 1 2 3
29 29 H 1.09002 * 109.46961 * 90.02974 * 5 4 3
30 30 H 1.09003 * 109.47179 * 210.02582 * 5 4 3
31 31 H 1.08994 * 109.47232 * 330.02917 * 5 4 3
32 32 H 1.08006 * 126.29207 * 179.73344 * 6 4 3
33 33 H 0.97001 * 119.99753 * 359.97438 * 10 8 7
34 34 H 1.09000 * 109.47326 * 300.07085 * 13 11 10
35 35 H 1.09005 * 109.47296 * 60.07770 * 13 11 10
36 36 H 1.09008 * 109.47059 * 180.02562 * 13 11 10
37 37 H 1.09004 * 112.94275 * 293.41612 * 14 11 10
38 38 H 1.08994 * 113.77085 * 336.34952 * 15 14 11
39 39 H 1.08996 * 113.76834 * 107.74613 * 15 14 11
40 40 H 0.97001 * 119.99649 * 179.97438 * 20 19 17
41 41 H 1.08994 * 113.76946 * 221.15262 * 25 16 15
42 42 H 1.08993 * 113.87144 * 89.76462 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2735 1.0555 0.0000
4 7 3.6111 0.6442 -0.0006
5 6 4.7787 1.5291 -0.0013
6 6 3.6439 -0.6979 -0.0069
7 6 2.3372 -1.1432 -0.0007
8 6 1.8915 -2.5485 -0.0017
9 8 0.7039 -2.8097 -0.0020
10 7 2.8004 -3.5438 -0.0022
11 6 2.3575 -4.9402 -0.0038
12 1 1.4449 -5.0326 0.5852
13 6 2.0840 -5.3869 -1.4413
14 6 3.4492 -5.8222 0.6055
15 6 2.9471 -7.2044 1.0608
16 7 3.7885 -7.0016 2.2589
17 6 4.3930 -7.8379 3.1591
18 1 4.9740 -7.4275 3.9718
19 6 4.2591 -9.2133 3.0271
20 7 3.5515 -9.7134 2.0364
21 14 5.0843 -10.3542 4.2546
22 1 4.1565 -10.6219 5.3827
23 1 5.4319 -11.6333 3.5852
24 1 6.3205 -9.7142 4.7716
25 6 3.7176 -5.5367 2.0943
26 1 -0.3634 0.0005 -1.0277
27 1 -0.3633 -0.8902 0.5135
28 1 -0.3634 0.8898 0.5142
29 1 5.0691 1.7482 1.0262
30 1 5.6054 1.0393 -0.5159
31 1 4.5304 2.4579 -0.5147
32 1 4.5298 -1.3157 -0.0129
33 1 3.7477 -3.3354 -0.0023
34 1 1.3072 -4.7577 -1.8757
35 1 2.9969 -5.2958 -2.0300
36 1 1.7540 -6.4258 -1.4424
37 1 4.3524 -5.8620 -0.0035
38 1 1.8787 -7.2353 1.2743
39 1 3.2785 -8.0240 0.4233
40 1 3.4582 -10.6745 1.9440
41 1 4.6631 -5.0274 2.2805
42 1 2.8767 -5.0749 2.6117
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000969394773.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:00:16
Heat of formation + Delta-G solvation = 65.002594 kcal
Electronic energy + Delta-G solvation = -23170.905179 eV
Core-core repulsion = 19767.434782 eV
Total energy + Delta-G solvation = -3403.470396 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.38200 -40.65217 -39.36234 -36.12420 -34.85359 -34.13530 -32.53300 -30.74774
-30.24814 -29.27466 -26.94734 -26.40158 -25.64726 -23.80333 -22.56337 -21.22346
-21.07212 -20.36187 -18.78507 -18.49603 -17.20390 -16.82603 -16.79271 -16.64951
-15.83759 -15.61576 -15.37100 -15.19772 -14.74473 -14.59899 -14.27351 -14.09574
-13.94326 -13.36296 -13.32301 -13.22811 -13.04299 -12.97919 -12.95976 -12.89880
-12.63825 -12.32575 -11.97791 -11.86562 -11.76460 -11.52206 -11.17673 -10.84470
-10.72274 -10.33682 -10.02090 -9.54863 -8.89426 -7.88518 -5.21824 0.57984
1.13409 1.46474 1.48727 1.50422 1.57139 2.32645 2.49215 2.54052
3.31849 3.41821 3.43193 3.75203 3.79098 4.03497 4.11419 4.29110
4.35416 4.43741 4.46420 4.50603 4.55617 4.63713 4.74126 4.77389
4.81817 4.90525 4.91740 4.99151 5.01689 5.03395 5.19138 5.28477
5.36564 5.54250 5.57182 5.65060 5.70891 5.94538 5.96693 6.55443
6.79603 6.94199 7.44617 7.63044 8.59254 9.28468
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.024820 B = 0.003177 C = 0.002982
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1127.867732 B = 8810.012998 C = 9388.478831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.113 3.887
3 N -0.332 5.332
4 N -0.359 5.359
5 C 0.086 3.914
6 C 0.124 3.876
7 C -0.318 4.318
8 C 0.593 3.407
9 O -0.585 6.585
10 N -0.705 5.705
11 C 0.165 3.835
12 H 0.059 0.941
13 C -0.151 4.151
14 C -0.106 4.106
15 C 0.169 3.831
16 N -0.644 5.644
17 C -0.236 4.236
18 H 0.084 0.916
19 C -0.068 4.068
20 N -0.953 5.953
21 Si 0.978 3.022
22 H -0.290 1.290
23 H -0.293 1.293
24 H -0.266 1.266
25 C 0.128 3.872
26 H 0.083 0.917
27 H 0.078 0.922
28 H 0.080 0.920
29 H 0.092 0.908
30 H 0.125 0.875
31 H 0.094 0.906
32 H 0.228 0.772
33 H 0.411 0.589
34 H 0.050 0.950
35 H 0.074 0.926
36 H 0.061 0.939
37 H 0.108 0.892
38 H 0.009 0.991
39 H 0.046 0.954
40 H 0.248 0.752
41 H 0.064 0.936
42 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.470 22.413 -8.103 24.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.054 4.054
3 N -0.155 5.155
4 N -0.137 5.137
5 C -0.053 4.053
6 C -0.029 4.029
7 C -0.333 4.333
8 C 0.382 3.618
9 O -0.466 6.466
10 N -0.356 5.356
11 C 0.060 3.940
12 H 0.077 0.923
13 C -0.209 4.209
14 C -0.126 4.126
15 C 0.043 3.957
16 N -0.371 5.371
17 C -0.365 4.365
18 H 0.101 0.899
19 C -0.261 4.261
20 N -0.602 5.602
21 Si 0.806 3.194
22 H -0.218 1.218
23 H -0.220 1.220
24 H -0.190 1.190
25 C 0.003 3.997
26 H 0.102 0.898
27 H 0.097 0.903
28 H 0.099 0.901
29 H 0.110 0.890
30 H 0.144 0.856
31 H 0.113 0.887
32 H 0.244 0.756
33 H 0.248 0.752
34 H 0.069 0.931
35 H 0.093 0.907
36 H 0.080 0.920
37 H 0.127 0.873
38 H 0.027 0.973
39 H 0.065 0.935
40 H 0.057 0.943
41 H 0.083 0.917
42 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 3.937 23.347 -7.950 24.976
hybrid contribution 0.306 -1.819 0.845 2.029
sum 4.243 21.528 -7.105 23.064
Atomic orbital electron populations
1.20285 0.85685 1.03627 1.03659 1.22687 0.97855 0.89338 0.95498
1.77118 0.87565 1.22939 1.27859 1.48700 1.06135 1.05593 1.53228
1.22422 0.82899 0.94639 1.05337 1.23686 0.99124 0.85424 0.94702
1.20265 0.93650 0.93439 1.25936 1.17494 0.85244 0.84271 0.74813
1.90712 1.18122 1.84877 1.52903 1.45674 1.09981 1.04888 1.75013
1.20703 0.96572 0.79835 0.96931 0.92324 1.22036 1.02245 1.01245
0.95383 1.23439 0.98580 0.95100 0.95498 1.22138 0.92138 0.94163
0.87224 1.46444 1.57390 1.02037 1.31200 1.19450 1.23762 0.87867
1.05400 0.89862 1.25631 1.01646 0.98073 1.00745 1.70004 1.45590
1.11119 1.33498 0.85084 0.78266 0.78132 0.77887 1.21751 1.21960
1.19015 1.22673 0.98688 0.85098 0.93238 0.89838 0.90333 0.90077
0.88957 0.85643 0.88708 0.75575 0.75244 0.93081 0.90682 0.92032
0.87348 0.97300 0.93515 0.94275 0.91746 0.95301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.74 9.92 71.24 0.71 -1.03 16
2 C 0.11 2.88 7.26 43.52 0.32 3.20 16
3 N -0.33 -7.85 12.50 -46.68 -0.58 -8.43 16
4 N -0.36 -5.74 3.98 -367.78 -1.46 -7.20 16
5 C 0.09 0.48 11.44 127.77 1.46 1.94 16
6 C 0.12 1.87 10.99 84.28 0.93 2.80 16
7 C -0.32 -7.55 6.13 -20.15 -0.12 -7.67 16
8 C 0.59 16.79 7.78 86.66 0.67 17.46 16
9 O -0.58 -21.19 14.58 -4.04 -0.06 -21.25 16
10 N -0.70 -16.89 4.93 -445.81 -2.20 -19.09 16
11 C 0.17 4.93 2.29 44.99 0.10 5.04 16
12 H 0.06 2.14 7.48 -2.38 -0.02 2.13 16
13 C -0.15 -4.09 9.44 71.98 0.68 -3.41 16
14 C -0.11 -3.61 3.35 -10.13 -0.03 -3.64 16
15 C 0.17 7.98 6.98 86.44 0.60 8.59 16
16 N -0.64 -32.99 3.70 -716.14 -2.65 -35.65 16
17 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16
18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16
19 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
20 N -0.95 -57.84 11.39 21.65 0.25 -57.59 16
21 Si 0.98 45.79 29.55 68.60 2.03 47.82 16
22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16
24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
25 C 0.13 4.93 8.38 86.49 0.72 5.65 16
26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
27 H 0.08 2.14 6.55 -2.39 -0.02 2.12 16
28 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16
29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16
30 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16
31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
32 H 0.23 1.14 7.46 -2.91 -0.02 1.12 16
33 H 0.41 6.82 7.53 -92.71 -0.70 6.13 16
34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16
36 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16
37 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16
38 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16
39 H 0.05 2.45 7.16 -2.39 -0.02 2.43 16
40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16
41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
42 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16
Total: -1.00 -79.96 351.93 3.05 -76.91
By element:
Atomic # 1 Polarization: 11.08 SS G_CDS: 0.32 Total: 11.40 kcal
Atomic # 6 Polarization: 5.67 SS G_CDS: 7.40 Total: 13.07 kcal
Atomic # 7 Polarization: -121.31 SS G_CDS: -6.65 Total: -127.96 kcal
Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal
Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal
Total: -79.96 3.05 -76.91 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000969394773.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.913 kcal
(2) G-P(sol) polarization free energy of solvation -79.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.957 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.003 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds