Wall clock time and date at job start Tue Mar 31 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33323 * 126.10989 * 2 1 4 4 C 1.30856 * 109.68670 * 179.97438 * 3 2 1 5 5 N 1.34492 * 109.16396 * 359.76420 * 4 3 2 6 6 C 1.46500 * 126.47521 * 180.25153 * 5 4 3 7 7 C 1.36667 * 126.10675 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84467 * 359.97354 * 7 2 1 9 9 O 1.21685 * 119.99537 * 278.58657 * 8 7 2 10 10 N 1.34771 * 120.00234 * 98.58654 * 8 7 2 11 11 C 1.46495 * 119.99857 * 185.21626 * 10 8 7 12 12 H 1.08998 * 109.47643 * 34.99542 * 11 10 8 13 13 C 1.53007 * 109.47229 * 274.99804 * 11 10 8 14 14 C 1.53001 * 109.47210 * 155.00201 * 11 10 8 15 15 C 1.53496 * 114.20196 * 294.73613 * 14 11 10 16 16 N 1.47065 * 87.98537 * 220.34669 * 15 14 11 17 17 C 1.36942 * 136.05460 * 207.08511 * 16 15 14 18 18 H 1.07995 * 120.00371 * 6.36573 * 17 16 15 19 19 C 1.38817 * 119.99799 * 186.35735 * 17 16 15 20 20 N 1.31622 * 119.99659 * 6.16194 * 19 17 16 21 21 Si 1.86796 * 120.00165 * 186.15877 * 19 17 16 22 22 H 1.48496 * 109.47411 * 265.01349 * 21 19 17 23 23 H 1.48503 * 109.47017 * 25.01491 * 21 19 17 24 24 H 1.48498 * 109.47296 * 145.00956 * 21 19 17 25 25 C 1.47060 * 87.88590 * 27.34490 * 16 15 14 26 26 H 1.08998 * 109.47304 * 270.00475 * 1 2 3 27 27 H 1.08999 * 109.46577 * 30.00125 * 1 2 3 28 28 H 1.09003 * 109.47025 * 149.99902 * 1 2 3 29 29 H 1.07999 * 125.41905 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.46930 * 274.95680 * 6 5 4 31 31 H 1.09004 * 109.47155 * 34.95882 * 6 5 4 32 32 H 1.08999 * 109.47249 * 154.95962 * 6 5 4 33 33 H 0.97004 * 119.99927 * 5.21008 * 10 8 7 34 34 H 1.09003 * 109.46694 * 304.90801 * 13 11 10 35 35 H 1.08999 * 109.47084 * 64.90499 * 13 11 10 36 36 H 1.08989 * 109.47396 * 184.90991 * 13 11 10 37 37 H 1.08997 * 113.41558 * 67.93988 * 14 11 10 38 38 H 1.09003 * 113.46561 * 105.57122 * 15 14 11 39 39 H 1.08994 * 113.52477 * 335.13395 * 15 14 11 40 40 H 0.96996 * 119.99653 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.46789 * 87.43586 * 25 16 15 42 42 H 1.09005 * 113.47022 * 217.87726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 0.0006 5 7 3.6122 -0.6362 0.0062 6 6 4.8305 -1.4498 0.0138 7 6 2.3123 -1.1042 0.0005 8 6 1.8820 -2.5073 0.0017 9 8 1.5536 -3.0421 1.0442 10 7 1.8506 -3.2035 -1.1519 11 6 1.3138 -4.5665 -1.1704 12 1 0.4877 -4.6413 -0.4633 13 6 2.4142 -5.5535 -0.7754 14 6 0.8124 -4.8980 -2.5774 15 6 -0.3842 -4.0523 -3.0346 16 7 -0.9498 -5.2703 -3.6340 17 6 -1.7964 -5.5571 -4.6714 18 1 -2.1303 -4.7688 -5.3297 19 6 -2.2252 -6.8613 -4.8770 20 7 -1.9178 -7.8000 -4.0071 21 14 -3.2386 -7.2840 -6.3882 22 1 -4.6825 -7.2391 -6.0444 23 1 -2.9553 -6.3013 -7.4649 24 1 -2.8836 -8.6477 -6.8568 25 6 -0.2113 -6.0443 -2.6248 26 1 -0.3634 0.0001 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.3971 1.3744 0.0003 30 1 5.1856 -1.5818 -1.0083 31 1 5.5983 -0.9488 0.6034 32 1 4.6140 -2.4241 0.4519 33 1 2.1834 -2.8021 -1.9699 34 1 3.2756 -5.4181 -1.4295 35 1 2.7106 -5.3728 0.2578 36 1 2.0404 -6.5726 -0.8733 37 1 1.6114 -4.9772 -3.3145 38 1 -0.1217 -3.2894 -3.7676 39 1 -0.9784 -3.6579 -2.2104 40 1 -2.2178 -8.7112 -4.1506 41 1 -0.7595 -6.1756 -1.6919 42 1 0.1984 -6.9786 -3.0086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969895255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:04 Heat of formation + Delta-G solvation = 80.026992 kcal Electronic energy + Delta-G solvation = -23551.091385 eV Core-core repulsion = 20148.272495 eV Total energy + Delta-G solvation = -3402.818890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.36162 -39.65174 -38.13235 -34.91716 -34.67039 -32.30145 -31.62169 -30.38963 -28.44937 -27.56737 -26.30886 -24.74795 -24.19556 -23.06697 -21.19500 -20.68113 -20.11988 -19.15221 -17.70750 -16.86162 -16.50149 -16.06000 -15.69651 -15.23599 -14.80563 -14.43319 -14.09143 -13.93497 -13.75528 -13.62052 -13.26367 -13.16139 -12.86320 -12.46931 -12.36523 -12.20965 -12.15193 -11.70297 -11.42756 -11.27747 -10.95096 -10.75791 -10.55087 -10.41738 -10.12950 -9.89763 -9.80958 -9.75890 -9.25722 -8.98967 -8.80008 -8.53782 -6.90930 -5.81175 -3.12081 1.53525 2.09256 2.71189 2.83959 3.28983 3.37766 3.42806 3.44964 4.30551 4.36551 4.43067 4.54514 4.72238 4.91147 5.00157 5.08928 5.12515 5.17078 5.34256 5.48321 5.59447 5.69419 5.73294 5.76010 5.87448 5.91035 5.98210 6.00483 6.19025 6.31183 6.40195 6.44521 6.49322 6.60055 6.71415 6.86187 7.14468 7.29663 7.47552 7.49815 7.79686 7.94016 8.13406 9.00906 9.67380 10.61560 11.37638 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.003454 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.903361 B = 8103.503419 C = 8650.393998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.062 3.938 3 N -0.492 5.492 4 C 0.197 3.803 5 N -0.442 5.442 6 C 0.068 3.932 7 C -0.078 4.078 8 C 0.595 3.405 9 O -0.525 6.525 10 N -0.705 5.705 11 C 0.154 3.846 12 H 0.090 0.910 13 C -0.158 4.158 14 C -0.156 4.156 15 C 0.125 3.875 16 N -0.609 5.609 17 C -0.220 4.220 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.176 3.824 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.210 0.790 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.400 0.600 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.031 0.969 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.420 12.778 7.552 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 N -0.211 5.211 4 C -0.085 4.085 5 N -0.125 5.125 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.378 3.622 9 O -0.400 6.400 10 N -0.355 5.355 11 C 0.049 3.951 12 H 0.108 0.892 13 C -0.216 4.216 14 C -0.176 4.176 15 C -0.002 4.002 16 N -0.334 5.334 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.216 1.216 25 C 0.049 3.951 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.226 0.774 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.810 12.836 8.068 21.194 hybrid contribution 0.007 -0.852 -1.079 1.375 sum 14.817 11.984 6.989 20.298 Atomic orbital electron populations 1.20158 0.86903 1.03259 1.02930 1.20872 0.96496 0.86696 1.02970 1.70020 1.00367 1.30179 1.20562 1.24964 0.97221 0.81643 1.04646 1.45300 1.05877 1.07745 1.53600 1.22160 0.84679 0.96485 1.04070 1.20855 0.84662 0.95284 1.18583 1.16881 0.78216 0.82930 0.84202 1.90852 1.48271 1.69303 1.31543 1.46194 1.62841 1.16152 1.10314 1.21113 0.96230 0.79265 0.98455 0.89222 1.22109 0.98521 0.99996 1.00989 1.23731 0.97579 1.02552 0.93708 1.22365 0.91293 0.91497 0.95028 1.45649 1.54553 1.01465 1.31780 1.18950 1.20571 0.93462 1.01777 0.90094 1.24828 1.00571 0.96123 0.98838 1.69843 1.50024 1.01303 1.35392 0.86099 0.79831 0.77641 0.82184 1.21572 1.20506 1.21579 1.21949 0.87673 0.93758 0.91690 0.90714 0.90531 0.90898 0.77351 0.89839 0.88964 0.89423 0.76560 0.92831 0.92713 0.90822 0.88952 0.94451 0.95088 0.93590 0.95133 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.24 36.00 0.37 -0.55 16 2 C 0.06 0.85 7.15 -82.51 -0.59 0.26 16 3 N -0.49 -6.40 11.20 -10.65 -0.12 -6.51 16 4 C 0.20 1.88 12.52 -90.58 -1.13 0.74 16 5 N -0.44 -4.29 3.17 -121.97 -0.39 -4.67 16 6 C 0.07 0.39 11.07 59.85 0.66 1.05 16 7 C -0.08 -1.00 6.66 -82.14 -0.55 -1.55 16 8 C 0.59 8.44 6.69 -12.82 -0.09 8.36 16 9 O -0.52 -9.30 16.82 5.20 0.09 -9.22 16 10 N -0.70 -8.96 4.95 -55.09 -0.27 -9.23 16 11 C 0.15 2.25 2.30 -67.93 -0.16 2.09 16 12 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 13 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 14 C -0.16 -2.67 3.52 -89.97 -0.32 -2.99 16 15 C 0.12 2.48 8.14 -8.51 -0.07 2.41 16 16 N -0.61 -15.47 3.77 -184.61 -0.70 -16.17 16 17 C -0.22 -6.17 10.74 -15.05 -0.16 -6.33 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.18 11.79 55.49 0.65 -26.52 16 21 Si 0.91 22.01 29.56 -169.99 -5.02 16.98 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.18 3.98 6.80 -8.38 -0.06 3.93 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 29 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.60 7.80 -51.93 -0.40 0.20 16 33 H 0.40 4.39 8.59 -40.82 -0.35 4.04 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 36 H 0.07 0.99 8.14 -51.94 -0.42 0.56 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.03 0.73 8.00 -51.93 -0.42 0.31 16 42 H 0.06 1.56 7.56 -51.93 -0.39 1.17 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -35.10 356.34 -8.78 -43.88 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.56 Total: 0.66 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.83 Total: 5.44 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.82 Total: -63.11 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.10 -8.78 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969895255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.905 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds