Wall clock time and date at job start Tue Mar 31 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33323 * 126.10989 * 2 1 4 4 C 1.30856 * 109.68670 * 179.97438 * 3 2 1 5 5 N 1.34492 * 109.16396 * 359.76420 * 4 3 2 6 6 C 1.46500 * 126.47521 * 180.25153 * 5 4 3 7 7 C 1.36667 * 126.10675 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84467 * 359.97354 * 7 2 1 9 9 O 1.21685 * 119.99537 * 278.58657 * 8 7 2 10 10 N 1.34771 * 120.00234 * 98.58654 * 8 7 2 11 11 C 1.46495 * 119.99857 * 185.21626 * 10 8 7 12 12 H 1.08998 * 109.47643 * 34.99542 * 11 10 8 13 13 C 1.53007 * 109.47229 * 274.99804 * 11 10 8 14 14 C 1.53001 * 109.47210 * 155.00201 * 11 10 8 15 15 C 1.53496 * 114.20196 * 294.73613 * 14 11 10 16 16 N 1.47065 * 87.98537 * 220.34669 * 15 14 11 17 17 C 1.36942 * 136.05460 * 207.08511 * 16 15 14 18 18 H 1.07995 * 120.00371 * 6.36573 * 17 16 15 19 19 C 1.38817 * 119.99799 * 186.35735 * 17 16 15 20 20 N 1.31622 * 119.99659 * 6.16194 * 19 17 16 21 21 Si 1.86796 * 120.00165 * 186.15877 * 19 17 16 22 22 H 1.48496 * 109.47411 * 265.01349 * 21 19 17 23 23 H 1.48503 * 109.47017 * 25.01491 * 21 19 17 24 24 H 1.48498 * 109.47296 * 145.00956 * 21 19 17 25 25 C 1.47060 * 87.88590 * 27.34490 * 16 15 14 26 26 H 1.08998 * 109.47304 * 270.00475 * 1 2 3 27 27 H 1.08999 * 109.46577 * 30.00125 * 1 2 3 28 28 H 1.09003 * 109.47025 * 149.99902 * 1 2 3 29 29 H 1.07999 * 125.41905 * 179.97438 * 4 3 2 30 30 H 1.09006 * 109.46930 * 274.95680 * 6 5 4 31 31 H 1.09004 * 109.47155 * 34.95882 * 6 5 4 32 32 H 1.08999 * 109.47249 * 154.95962 * 6 5 4 33 33 H 0.97004 * 119.99927 * 5.21008 * 10 8 7 34 34 H 1.09003 * 109.46694 * 304.90801 * 13 11 10 35 35 H 1.08999 * 109.47084 * 64.90499 * 13 11 10 36 36 H 1.08989 * 109.47396 * 184.90991 * 13 11 10 37 37 H 1.08997 * 113.41558 * 67.93988 * 14 11 10 38 38 H 1.09003 * 113.46561 * 105.57122 * 15 14 11 39 39 H 1.08994 * 113.52477 * 335.13395 * 15 14 11 40 40 H 0.96996 * 119.99653 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.46789 * 87.43586 * 25 16 15 42 42 H 1.09005 * 113.47022 * 217.87726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 0.0006 5 7 3.6122 -0.6362 0.0062 6 6 4.8305 -1.4498 0.0138 7 6 2.3123 -1.1042 0.0005 8 6 1.8820 -2.5073 0.0017 9 8 1.5536 -3.0421 1.0442 10 7 1.8506 -3.2035 -1.1519 11 6 1.3138 -4.5665 -1.1704 12 1 0.4877 -4.6413 -0.4633 13 6 2.4142 -5.5535 -0.7754 14 6 0.8124 -4.8980 -2.5774 15 6 -0.3842 -4.0523 -3.0346 16 7 -0.9498 -5.2703 -3.6340 17 6 -1.7964 -5.5571 -4.6714 18 1 -2.1303 -4.7688 -5.3297 19 6 -2.2252 -6.8613 -4.8770 20 7 -1.9178 -7.8000 -4.0071 21 14 -3.2386 -7.2840 -6.3882 22 1 -4.6825 -7.2391 -6.0444 23 1 -2.9553 -6.3013 -7.4649 24 1 -2.8836 -8.6477 -6.8568 25 6 -0.2113 -6.0443 -2.6248 26 1 -0.3634 0.0001 1.0276 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.3971 1.3744 0.0003 30 1 5.1856 -1.5818 -1.0083 31 1 5.5983 -0.9488 0.6034 32 1 4.6140 -2.4241 0.4519 33 1 2.1834 -2.8021 -1.9699 34 1 3.2756 -5.4181 -1.4295 35 1 2.7106 -5.3728 0.2578 36 1 2.0404 -6.5726 -0.8733 37 1 1.6114 -4.9772 -3.3145 38 1 -0.1217 -3.2894 -3.7676 39 1 -0.9784 -3.6579 -2.2104 40 1 -2.2178 -8.7112 -4.1506 41 1 -0.7595 -6.1756 -1.6919 42 1 0.1984 -6.9786 -3.0086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969895255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:03 Heat of formation + Delta-G solvation = 56.703020 kcal Electronic energy + Delta-G solvation = -23552.102788 eV Core-core repulsion = 20148.272495 eV Total energy + Delta-G solvation = -3403.830293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19289 -40.95050 -39.67348 -36.27726 -35.41461 -34.22052 -32.74496 -31.53659 -29.47466 -29.15389 -27.06975 -26.40092 -25.81890 -24.29693 -22.49907 -21.61033 -21.35206 -20.51276 -18.80634 -18.63654 -17.61468 -17.03343 -16.87516 -16.52133 -16.21216 -15.86874 -15.57107 -15.11510 -14.96790 -14.63844 -14.44841 -14.12831 -13.95852 -13.53683 -13.43162 -13.24628 -13.22073 -13.12552 -13.06346 -13.04442 -12.71041 -12.42940 -12.08772 -11.90991 -11.67961 -11.46784 -11.06882 -10.88539 -10.86269 -10.58111 -10.19169 -9.43189 -8.95059 -7.94442 -5.26761 0.67852 1.16868 1.45884 1.47406 1.56964 1.73777 1.99412 2.29691 2.46571 3.28976 3.40838 3.49877 3.62594 3.77007 3.86794 3.95522 4.16261 4.23190 4.30754 4.38947 4.39965 4.53183 4.66064 4.72594 4.76864 4.79590 4.85033 4.85841 4.92651 4.96856 5.05213 5.16255 5.20405 5.28349 5.41071 5.49037 5.53306 5.61036 5.89873 6.17978 6.40903 6.88868 6.96243 7.05087 7.57652 8.58802 9.24616 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.003454 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.903361 B = 8103.503419 C = 8650.393998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 N -0.529 5.529 4 C 0.215 3.785 5 N -0.437 5.437 6 C 0.061 3.939 7 C -0.098 4.098 8 C 0.604 3.396 9 O -0.566 6.566 10 N -0.690 5.690 11 C 0.165 3.835 12 H 0.064 0.936 13 C -0.151 4.151 14 C -0.113 4.113 15 C 0.125 3.875 16 N -0.641 5.641 17 C -0.234 4.234 18 H 0.086 0.914 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.980 3.020 22 H -0.289 1.289 23 H -0.265 1.265 24 H -0.292 1.292 25 C 0.172 3.828 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.256 0.744 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.413 0.587 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.250 0.750 41 H 0.012 0.988 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.768 14.456 6.718 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 N -0.248 5.248 4 C -0.067 4.067 5 N -0.120 5.120 6 C -0.079 4.079 7 C -0.215 4.215 8 C 0.388 3.612 9 O -0.443 6.443 10 N -0.341 5.341 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.209 4.209 14 C -0.133 4.133 15 C 0.000 4.000 16 N -0.367 5.367 17 C -0.362 4.362 18 H 0.103 0.897 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.216 1.216 23 H -0.189 1.189 24 H -0.219 1.219 25 C 0.045 3.955 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.199 14.547 7.216 23.654 hybrid contribution -0.670 -1.287 -0.774 1.644 sum 16.530 13.261 6.442 22.149 Atomic orbital electron populations 1.20137 0.87098 1.03168 1.02791 1.21062 0.96956 0.87361 1.03565 1.70007 1.01905 1.30424 1.22449 1.25868 0.97413 0.81973 1.01429 1.45522 1.05731 1.08182 1.52546 1.22492 0.83640 0.95774 1.06020 1.20577 0.86389 0.94041 1.20475 1.16987 0.77218 0.83351 0.83614 1.90833 1.50118 1.70360 1.33009 1.45953 1.62194 1.15236 1.10709 1.20797 0.96371 0.80905 0.95949 0.91776 1.22036 0.98482 0.98852 1.01515 1.23352 0.96364 0.98047 0.95508 1.22491 0.91754 0.90767 0.95020 1.46056 1.54459 1.04261 1.31941 1.19370 1.20418 0.93777 1.02619 0.89660 1.25686 1.02244 0.96111 1.01834 1.70023 1.51544 1.01315 1.37278 0.85038 0.77894 0.77248 0.79005 1.21577 1.18938 1.21850 1.21894 0.89055 0.94371 0.90175 0.90918 0.89769 0.91759 0.72795 0.87677 0.85805 0.90740 0.75050 0.90357 0.92758 0.91510 0.87017 0.92585 0.95299 0.94159 0.97006 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.24 71.23 0.73 -1.11 16 2 C 0.04 1.15 7.15 41.96 0.30 1.45 16 3 N -0.53 -12.80 11.20 -187.59 -2.10 -14.90 16 4 C 0.22 3.40 12.52 180.33 2.26 5.65 16 5 N -0.44 -7.25 3.17 -539.80 -1.71 -8.96 16 6 C 0.06 0.48 11.07 127.77 1.41 1.90 16 7 C -0.10 -2.40 6.66 40.01 0.27 -2.13 16 8 C 0.60 16.72 6.69 86.47 0.58 17.30 16 9 O -0.57 -20.20 16.82 -4.30 -0.07 -20.27 16 10 N -0.69 -16.54 4.95 -446.42 -2.21 -18.76 16 11 C 0.16 4.70 2.30 45.00 0.10 4.81 16 12 H 0.06 2.22 7.51 -2.39 -0.02 2.20 16 13 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 14 C -0.11 -3.77 3.52 -10.37 -0.04 -3.81 16 15 C 0.12 4.90 8.14 83.17 0.68 5.57 16 16 N -0.64 -32.90 3.77 -737.99 -2.78 -35.68 16 17 C -0.23 -13.18 10.74 84.03 0.90 -12.28 16 18 H 0.09 4.58 7.84 -2.91 -0.02 4.56 16 19 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 20 N -0.95 -57.86 11.79 21.65 0.26 -57.61 16 21 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.17 7.97 6.80 83.27 0.57 8.54 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.64 7.94 -2.39 -0.02 1.62 16 29 H 0.26 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.07 0.83 7.80 -2.39 -0.02 0.81 16 33 H 0.41 8.01 8.59 -92.71 -0.80 7.21 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.01 0.60 8.00 -2.39 -0.02 0.58 16 42 H 0.04 1.84 7.56 -2.38 -0.02 1.82 16 Total: -1.00 -78.59 356.34 2.53 -76.06 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.22 Total: 12.88 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 8.91 Total: 19.58 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -8.55 Total: -135.90 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.07 Total: -20.27 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.59 2.53 -76.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969895255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.759 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds