Wall clock time and date at job start Tue Mar 31 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33319 * 126.10703 * 2 1 4 4 C 1.30861 * 109.68388 * 180.02562 * 3 2 1 5 5 N 1.34492 * 109.16498 * 359.73238 * 4 3 2 6 6 C 1.46504 * 126.47624 * 180.28729 * 5 4 3 7 7 C 1.36663 * 126.10591 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.84806 * 359.97251 * 7 2 1 9 9 O 1.21679 * 120.00476 * 278.67276 * 8 7 2 10 10 N 1.34785 * 119.99867 * 98.66825 * 8 7 2 11 11 C 1.46494 * 119.99753 * 174.79670 * 10 8 7 12 12 H 1.08993 * 109.47656 * 325.00318 * 11 10 8 13 13 C 1.53002 * 109.47101 * 85.00478 * 11 10 8 14 14 C 1.53005 * 109.47143 * 204.99998 * 11 10 8 15 15 C 1.53495 * 114.20826 * 180.02562 * 14 11 10 16 16 N 1.47066 * 87.98460 * 220.14781 * 15 14 11 17 17 C 1.36937 * 136.06144 * 207.08329 * 16 15 14 18 18 H 1.08003 * 119.99222 * 6.14337 * 17 16 15 19 19 C 1.38806 * 120.00262 * 186.14243 * 17 16 15 20 20 N 1.31614 * 120.00145 * 354.93961 * 19 17 16 21 21 Si 1.86806 * 119.99982 * 174.93896 * 19 17 16 22 22 H 1.48496 * 109.47014 * 275.00948 * 21 19 17 23 23 H 1.48501 * 109.46990 * 35.00787 * 21 19 17 24 24 H 1.48494 * 109.46802 * 155.00613 * 21 19 17 25 25 C 1.47073 * 87.88495 * 27.34063 * 16 15 14 26 26 H 1.08994 * 109.46916 * 269.96984 * 1 2 3 27 27 H 1.09006 * 109.47281 * 29.96836 * 1 2 3 28 28 H 1.09003 * 109.47248 * 149.97243 * 1 2 3 29 29 H 1.08003 * 125.41893 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.47338 * 274.98888 * 6 5 4 31 31 H 1.09003 * 109.46435 * 34.99572 * 6 5 4 32 32 H 1.08998 * 109.47043 * 154.98909 * 6 5 4 33 33 H 0.96995 * 119.99761 * 354.79638 * 10 8 7 34 34 H 1.08995 * 109.47499 * 59.99378 * 13 11 10 35 35 H 1.08999 * 109.47340 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46777 * 299.99634 * 13 11 10 37 37 H 1.09003 * 113.27851 * 313.06750 * 14 11 10 38 38 H 1.08995 * 113.46949 * 105.36760 * 15 14 11 39 39 H 1.09006 * 113.51879 * 334.93170 * 15 14 11 40 40 H 0.97005 * 120.00534 * 180.02562 * 20 19 17 41 41 H 1.09003 * 113.46383 * 87.43917 * 25 16 15 42 42 H 1.08994 * 113.46667 * 217.87666 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6121 -0.6362 0.0050 6 6 4.8305 -1.4498 0.0123 7 6 2.3123 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 1.5522 -3.0426 1.0412 10 7 1.8523 -3.2030 -1.1546 11 6 1.5333 -4.6327 -1.1399 12 1 1.9420 -5.0870 -0.2374 13 6 0.0145 -4.8166 -1.1606 14 6 2.1451 -5.3044 -2.3710 15 6 1.8750 -6.8125 -2.4646 16 7 3.2590 -6.9786 -2.9333 17 6 3.9335 -7.8760 -3.7176 18 1 3.3926 -8.6557 -4.2333 19 6 5.3122 -7.7834 -3.8497 20 7 5.9595 -6.7761 -3.3033 21 14 6.2488 -9.0886 -4.8030 22 1 6.5541 -10.2326 -3.9068 23 1 5.4205 -9.5594 -5.9421 24 1 7.5163 -8.5112 -5.3180 25 6 3.6014 -5.7605 -2.1838 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8903 -0.5134 28 1 -0.3634 -0.8898 -0.5143 29 1 4.3970 1.3744 -0.0011 30 1 5.1857 -1.5813 -1.0097 31 1 5.5981 -0.9490 0.6023 32 1 4.6140 -2.4243 0.4499 33 1 2.0420 -2.7569 -1.9948 34 1 -0.3943 -4.3623 -2.0631 35 1 -0.2229 -5.8804 -1.1492 36 1 -0.4214 -4.3381 -0.2836 37 1 1.9592 -4.7590 -3.2963 38 1 1.1284 -7.0741 -3.2145 39 1 1.6845 -7.2811 -1.4990 40 1 6.9229 -6.7112 -3.3959 41 1 3.8663 -5.9509 -1.1437 42 1 4.3256 -5.1258 -2.6943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969895260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:07 Heat of formation + Delta-G solvation = 57.181115 kcal Electronic energy + Delta-G solvation = -23615.927769 eV Core-core repulsion = 20212.118208 eV Total energy + Delta-G solvation = -3403.809561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.20530 -40.93572 -39.69953 -36.27118 -35.43349 -34.25042 -32.70622 -31.50781 -29.47749 -29.16760 -27.07454 -26.47234 -25.72043 -24.34043 -22.50585 -21.69397 -21.32622 -20.42932 -18.79427 -18.62943 -17.64235 -17.12335 -16.89203 -16.61196 -16.14855 -15.77602 -15.60051 -15.12144 -14.86298 -14.62355 -14.45812 -14.14889 -13.94491 -13.57071 -13.46396 -13.32314 -13.22645 -13.09041 -13.03348 -12.91090 -12.73900 -12.64673 -12.07143 -11.76322 -11.68007 -11.50043 -11.06079 -10.90314 -10.88598 -10.60996 -10.17106 -9.44136 -8.93567 -7.94601 -5.26830 0.66097 1.13783 1.45059 1.47397 1.54927 1.82494 1.97414 2.24825 2.45845 3.27583 3.38436 3.53058 3.63730 3.74050 3.83434 3.95021 4.13958 4.25708 4.28475 4.32308 4.44682 4.55169 4.62646 4.75299 4.76912 4.80433 4.83355 4.86525 4.97261 4.99582 5.06157 5.16880 5.22203 5.34298 5.39350 5.50161 5.55065 5.61962 5.90481 6.13284 6.39287 6.88783 6.93846 7.03492 7.57651 8.58775 9.23606 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003801 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.130142 B = 7365.296059 C = 8345.114702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.047 3.953 3 N -0.524 5.524 4 C 0.213 3.787 5 N -0.438 5.438 6 C 0.064 3.936 7 C -0.104 4.104 8 C 0.604 3.396 9 O -0.564 6.564 10 N -0.695 5.695 11 C 0.164 3.836 12 H 0.065 0.935 13 C -0.152 4.152 14 C -0.114 4.114 15 C 0.130 3.870 16 N -0.644 5.644 17 C -0.233 4.233 18 H 0.086 0.914 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.287 1.287 23 H -0.267 1.267 24 H -0.293 1.293 25 C 0.165 3.835 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.253 0.747 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.249 0.751 41 H 0.006 0.994 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 13.933 4.379 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 N -0.244 5.244 4 C -0.069 4.069 5 N -0.120 5.120 6 C -0.077 4.077 7 C -0.221 4.221 8 C 0.388 3.612 9 O -0.442 6.442 10 N -0.345 5.345 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.210 4.210 14 C -0.134 4.134 15 C 0.004 3.996 16 N -0.370 5.370 17 C -0.361 4.361 18 H 0.104 0.896 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.805 3.195 22 H -0.214 1.214 23 H -0.192 1.192 24 H -0.220 1.220 25 C 0.039 3.961 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.269 0.731 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.229 14.027 4.932 16.533 hybrid contribution 1.489 -1.500 -0.525 2.178 sum -5.740 12.527 4.407 14.467 Atomic orbital electron populations 1.20164 0.86112 1.03541 1.03034 1.21209 0.97377 0.86879 1.03166 1.70028 1.01566 1.30366 1.22404 1.25843 0.97651 0.81762 1.01656 1.45508 1.05828 1.08293 1.52387 1.22388 0.84129 0.95610 1.05579 1.20668 0.86167 0.94447 1.20828 1.16981 0.77065 0.83567 0.83575 1.90813 1.49824 1.70321 1.33245 1.46033 1.69372 1.10029 1.09072 1.20861 0.96526 0.79134 0.97591 0.91685 1.22068 0.93201 1.03167 1.02550 1.23345 0.96431 0.95941 0.97703 1.22482 0.87399 0.92272 0.97440 1.45930 1.07206 1.29426 1.54407 1.19341 0.89898 1.07073 1.19754 0.89594 1.25631 0.97036 1.00577 1.02470 1.70005 1.07333 1.31997 1.50592 0.85122 0.77841 0.78343 0.78226 1.21449 1.19170 1.21974 1.22026 0.93938 0.87331 0.92843 0.90771 0.89533 0.90932 0.73112 0.88624 0.85575 0.91420 0.75261 0.90669 0.90521 0.92832 0.87591 0.92163 0.93939 0.94229 0.97582 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.24 71.23 0.73 -0.77 16 2 C 0.05 1.22 7.15 41.96 0.30 1.52 16 3 N -0.52 -13.19 11.20 -187.59 -2.10 -15.29 16 4 C 0.21 4.06 12.52 180.33 2.26 6.31 16 5 N -0.44 -9.43 3.17 -539.80 -1.71 -11.15 16 6 C 0.06 1.08 11.07 127.77 1.41 2.49 16 7 C -0.10 -2.79 6.66 40.01 0.27 -2.53 16 8 C 0.60 17.85 6.69 86.47 0.58 18.43 16 9 O -0.56 -20.73 16.77 -4.28 -0.07 -20.80 16 10 N -0.69 -18.12 5.07 -446.42 -2.26 -20.38 16 11 C 0.16 4.66 2.44 45.00 0.11 4.77 16 12 H 0.06 2.20 7.42 -2.39 -0.02 2.18 16 13 C -0.15 -3.57 9.29 71.98 0.67 -2.90 16 14 C -0.11 -3.77 3.66 -10.37 -0.04 -3.81 16 15 C 0.13 4.87 7.33 83.18 0.61 5.48 16 16 N -0.64 -32.23 3.78 -737.90 -2.79 -35.02 16 17 C -0.23 -12.85 10.74 84.03 0.90 -11.95 16 18 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 19 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 20 N -0.95 -56.14 11.61 21.65 0.25 -55.89 16 21 Si 0.98 44.79 29.56 68.60 2.03 46.82 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 C 0.16 7.46 6.92 83.27 0.58 8.04 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.07 1.44 7.94 -2.39 -0.02 1.42 16 29 H 0.25 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 33 H 0.41 9.30 8.59 -92.71 -0.80 8.50 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.70 7.49 -2.39 -0.02 1.68 16 36 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 37 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.56 8.11 -2.38 -0.02 1.54 16 40 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 41 H 0.01 0.31 7.94 -2.39 -0.02 0.29 16 42 H 0.04 1.90 7.28 -2.39 -0.02 1.88 16 Total: -1.00 -75.09 354.52 2.41 -72.69 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.22 Total: 17.04 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 8.84 Total: 21.98 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -8.61 Total: -137.73 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.80 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.09 2.41 -72.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969895260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.867 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds