Wall clock time and date at job start Tue Mar 31 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30860 * 125.41721 * 2 1 4 4 C 1.33315 * 109.68598 * 179.74003 * 3 2 1 5 5 C 1.50699 * 126.10953 * 180.27459 * 4 3 2 6 6 C 1.36670 * 107.78653 * 0.37668 * 4 3 2 7 7 C 1.46760 * 126.84304 * 179.89560 * 6 4 3 8 8 O 1.21680 * 120.00185 * 359.71207 * 7 6 4 9 9 N 1.34780 * 119.99661 * 179.71487 * 7 6 4 10 10 C 1.46496 * 119.99734 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47552 * 324.99740 * 10 9 7 12 12 C 1.53008 * 109.47421 * 84.99427 * 10 9 7 13 13 C 1.52998 * 109.46930 * 204.99506 * 10 9 7 14 14 C 1.53504 * 114.20785 * 179.97438 * 13 10 9 15 15 N 1.47069 * 87.98363 * 220.34571 * 14 13 10 16 16 C 1.36941 * 136.05552 * 207.07801 * 15 14 13 17 17 H 1.08000 * 119.99396 * 7.56018 * 16 15 14 18 18 C 1.38806 * 119.99993 * 187.55101 * 16 15 14 19 19 N 1.31621 * 119.99759 * 174.37714 * 18 16 15 20 20 Si 1.86799 * 119.99972 * 354.38427 * 18 16 15 21 21 H 1.48501 * 109.46963 * 174.94900 * 20 18 16 22 22 H 1.48498 * 109.47184 * 294.94894 * 20 18 16 23 23 H 1.48507 * 109.47082 * 54.95224 * 20 18 16 24 24 C 1.47064 * 87.88742 * 27.34488 * 15 14 13 25 25 N 1.34492 * 125.42339 * 179.97438 * 2 1 3 26 26 H 0.97001 * 126.47014 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47694 * 270.02440 * 1 2 3 28 28 H 1.08997 * 109.47475 * 30.03169 * 1 2 3 29 29 H 1.09001 * 109.46905 * 150.02385 * 1 2 3 30 30 H 1.09002 * 109.46967 * 270.12350 * 5 4 3 31 31 H 1.08998 * 109.47159 * 30.11950 * 5 4 3 32 32 H 1.08999 * 109.47750 * 150.12126 * 5 4 3 33 33 H 0.96996 * 120.00127 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46240 * 60.00200 * 12 10 9 35 35 H 1.08991 * 109.47021 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.46942 * 300.00242 * 12 10 9 37 37 H 1.09002 * 113.41395 * 313.19707 * 13 10 9 38 38 H 1.08997 * 113.46758 * 105.56146 * 14 13 10 39 39 H 1.09000 * 113.51898 * 335.13170 * 14 13 10 40 40 H 0.96993 * 120.00423 * 354.88754 * 19 18 16 41 41 H 1.08993 * 113.47012 * 87.43421 * 24 15 14 42 42 H 1.09000 * 113.46758 * 217.87997 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7050 0.0057 5 6 4.7334 1.6361 0.0135 6 6 3.5976 -0.6608 0.0009 7 6 4.8029 -1.4981 0.0023 8 8 5.9038 -0.9798 0.0029 9 7 4.6903 -2.8412 0.0028 10 6 5.8935 -3.6770 0.0047 11 1 6.6729 -3.1933 -0.5840 12 6 6.3824 -3.8640 1.4425 13 6 5.5671 -5.0420 -0.6045 14 6 6.7581 -6.0090 -0.6567 15 7 6.2953 -6.4250 -1.9892 16 6 6.3897 -7.5546 -2.7576 17 1 6.8093 -8.4580 -2.3402 18 6 5.9460 -7.5385 -4.0727 19 7 6.1369 -8.5874 -4.8445 20 14 5.0781 -6.0281 -4.7472 21 1 4.8158 -6.2140 -6.1970 22 1 3.7909 -5.8361 -4.0319 23 1 5.9376 -4.8334 -4.5489 24 6 5.6924 -5.0917 -2.1362 25 7 2.2865 -1.0960 0.0005 26 1 1.9850 -2.0179 0.0006 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 5.0229 1.8644 -1.0123 31 1 4.4673 2.5585 0.5296 32 1 5.5672 1.1590 0.5286 33 1 3.8128 -3.2544 0.0026 34 1 5.6029 -4.3478 2.0312 35 1 7.2772 -4.4862 1.4439 36 1 6.6148 -2.8916 1.8765 37 1 4.6500 -5.4827 -0.2135 38 1 6.7057 -6.8028 0.0884 39 1 7.7256 -5.5071 -0.6703 40 1 6.6519 -9.3420 -4.5188 41 1 6.3785 -4.3471 -2.5399 42 1 4.7320 -5.1040 -2.6516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970437011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:01 Heat of formation + Delta-G solvation = 71.371581 kcal Electronic energy + Delta-G solvation = -23407.116765 eV Core-core repulsion = 20003.922549 eV Total energy + Delta-G solvation = -3403.194216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.51288 -39.83945 -38.51039 -35.25021 -33.62165 -32.69709 -32.30649 -30.65921 -29.37731 -27.82183 -26.76606 -25.41535 -23.99061 -22.26643 -21.48357 -20.67613 -20.26066 -19.46914 -18.40894 -17.53152 -16.43677 -16.12219 -16.03916 -15.37174 -14.80678 -14.57145 -14.19956 -13.92898 -13.80218 -13.41472 -13.26984 -13.21896 -12.99914 -12.78071 -12.62937 -12.39383 -12.20889 -11.97307 -11.90194 -11.57570 -11.01117 -10.74158 -10.61071 -10.42255 -10.34013 -10.22253 -9.90918 -9.37590 -9.19112 -9.06196 -8.95640 -8.55211 -7.22016 -6.34262 -3.28633 1.07672 2.55193 2.57473 3.01688 3.19554 3.33408 3.40436 3.59819 3.97393 4.50457 4.54481 4.58954 4.73684 4.83491 4.86811 5.01426 5.06246 5.12813 5.35335 5.41344 5.43071 5.49243 5.50918 5.65759 5.69229 5.78001 5.83142 5.93936 5.94300 6.08119 6.16459 6.20125 6.22993 6.32025 6.41550 6.47385 6.83197 6.91466 7.06383 7.32563 7.69916 8.05488 8.18863 8.92724 9.44886 10.31181 11.15690 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.003980 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.970750 B = 7034.143628 C = 7786.063466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.240 3.760 3 N -0.496 5.496 4 C 0.099 3.901 5 C -0.077 4.077 6 C -0.093 4.093 7 C 0.595 3.405 8 O -0.523 6.523 9 N -0.720 5.720 10 C 0.153 3.847 11 H 0.094 0.906 12 C -0.158 4.158 13 C -0.141 4.141 14 C 0.135 3.865 15 N -0.629 5.629 16 C -0.305 4.305 17 H 0.084 0.916 18 C -0.024 4.024 19 N -0.934 5.934 20 Si 1.071 2.929 21 H -0.294 1.294 22 H -0.295 1.295 23 H -0.287 1.287 24 C 0.103 3.897 25 N -0.552 5.552 26 H 0.421 0.579 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.046 0.954 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 16.715 13.837 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.023 4.023 3 N -0.217 5.217 4 C -0.036 4.036 5 C -0.135 4.135 6 C -0.208 4.208 7 C 0.382 3.618 8 O -0.399 6.399 9 N -0.370 5.370 10 C 0.049 3.951 11 H 0.112 0.888 12 C -0.217 4.217 13 C -0.161 4.161 14 C 0.008 3.992 15 N -0.356 5.356 16 C -0.431 4.431 17 H 0.101 0.899 18 C -0.223 4.223 19 N -0.576 5.576 20 Si 0.903 3.097 21 H -0.221 1.221 22 H -0.224 1.224 23 H -0.214 1.214 24 C -0.023 4.023 25 N -0.158 5.158 26 H 0.260 0.740 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.227 18.221 12.327 24.260 hybrid contribution 0.440 -2.252 1.291 2.633 sum -9.787 15.968 13.618 23.156 Atomic orbital electron populations 1.20313 0.84193 1.04685 1.04042 1.23407 0.95827 0.81490 1.01618 1.70096 1.01690 1.28261 1.21690 1.21082 0.93130 0.90322 0.99046 1.20297 0.93005 0.97001 1.03168 1.20962 0.83769 0.95522 1.20573 1.16802 0.86930 0.81543 0.76544 1.90816 1.25758 1.72986 1.50343 1.46025 1.10159 1.05538 1.75319 1.21070 0.86842 0.90118 0.97098 0.88835 1.22124 1.01650 1.02024 0.95856 1.23574 1.01144 0.93761 0.97595 1.22251 0.93978 0.93876 0.89100 1.45974 1.63289 1.09432 1.16953 1.20170 1.41636 0.87521 0.93802 0.89878 1.25704 1.01157 1.03833 0.91603 1.70909 1.42049 1.07395 1.37218 0.83707 0.75822 0.74833 0.75309 1.22141 1.22380 1.21386 1.22840 0.97324 0.89012 0.93120 1.43188 1.06071 1.10189 1.56370 0.74004 0.89591 0.88630 0.90273 0.90663 0.91156 0.89193 0.77457 0.92656 0.91054 0.92361 0.88536 0.93464 0.94182 0.92872 0.93649 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.24 2.28 8.12 -155.62 -1.26 1.02 16 3 N -0.50 -6.21 11.20 -6.85 -0.08 -6.29 16 4 C 0.10 1.28 7.15 -82.52 -0.59 0.69 16 5 C -0.08 -0.89 9.88 36.01 0.36 -0.53 16 6 C -0.09 -1.14 7.08 -82.15 -0.58 -1.72 16 7 C 0.60 8.04 7.75 -12.82 -0.10 7.94 16 8 O -0.52 -8.48 14.48 5.21 0.08 -8.41 16 9 N -0.72 -8.52 5.07 -55.09 -0.28 -8.80 16 10 C 0.15 2.06 2.47 -67.93 -0.17 1.89 16 11 H 0.09 1.45 7.32 -51.93 -0.38 1.07 16 12 C -0.16 -1.85 9.29 37.16 0.35 -1.50 16 13 C -0.14 -2.21 3.67 -89.96 -0.33 -2.54 16 14 C 0.13 2.52 7.33 -8.50 -0.06 2.46 16 15 N -0.63 -15.24 3.69 -184.57 -0.68 -15.92 16 16 C -0.31 -8.78 11.08 -15.06 -0.17 -8.95 16 17 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 19 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 20 Si 1.07 26.91 25.16 -169.99 -4.28 22.63 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.30 -6.91 6.51 56.52 0.37 -6.54 16 23 H -0.29 -6.85 6.21 56.52 0.35 -6.50 16 24 C 0.10 2.11 5.27 -8.36 -0.04 2.07 16 25 N -0.55 -4.96 6.07 -7.02 -0.04 -5.00 16 26 H 0.42 2.41 8.32 -40.82 -0.34 2.07 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.10 6.49 -51.93 -0.34 0.76 16 33 H 0.39 3.63 7.85 -40.82 -0.32 3.31 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.73 8.10 -51.93 -0.42 0.30 16 40 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 41 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 42 H 0.05 1.06 4.73 -51.93 -0.25 0.82 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -36.04 342.09 -7.97 -44.01 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.28 Total: 1.36 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.32 Total: 0.02 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.32 Total: -64.77 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.28 Total: 22.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.04 -7.97 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970437011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.377 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds