Wall clock time and date at job start Tue Mar 31 2020 04:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30860 * 125.41721 * 2 1 4 4 C 1.33315 * 109.68598 * 179.74003 * 3 2 1 5 5 C 1.50699 * 126.10953 * 180.27459 * 4 3 2 6 6 C 1.36670 * 107.78653 * 0.37668 * 4 3 2 7 7 C 1.46760 * 126.84304 * 179.89560 * 6 4 3 8 8 O 1.21680 * 120.00185 * 359.71207 * 7 6 4 9 9 N 1.34780 * 119.99661 * 179.71487 * 7 6 4 10 10 C 1.46496 * 119.99734 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47552 * 324.99740 * 10 9 7 12 12 C 1.53008 * 109.47421 * 84.99427 * 10 9 7 13 13 C 1.52998 * 109.46930 * 204.99506 * 10 9 7 14 14 C 1.53504 * 114.20785 * 179.97438 * 13 10 9 15 15 N 1.47069 * 87.98363 * 220.34571 * 14 13 10 16 16 C 1.36941 * 136.05552 * 207.07801 * 15 14 13 17 17 H 1.08000 * 119.99396 * 7.56018 * 16 15 14 18 18 C 1.38806 * 119.99993 * 187.55101 * 16 15 14 19 19 N 1.31621 * 119.99759 * 174.37714 * 18 16 15 20 20 Si 1.86799 * 119.99972 * 354.38427 * 18 16 15 21 21 H 1.48501 * 109.46963 * 174.94900 * 20 18 16 22 22 H 1.48498 * 109.47184 * 294.94894 * 20 18 16 23 23 H 1.48507 * 109.47082 * 54.95224 * 20 18 16 24 24 C 1.47064 * 87.88742 * 27.34488 * 15 14 13 25 25 N 1.34492 * 125.42339 * 179.97438 * 2 1 3 26 26 H 0.97001 * 126.47014 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47694 * 270.02440 * 1 2 3 28 28 H 1.08997 * 109.47475 * 30.03169 * 1 2 3 29 29 H 1.09001 * 109.46905 * 150.02385 * 1 2 3 30 30 H 1.09002 * 109.46967 * 270.12350 * 5 4 3 31 31 H 1.08998 * 109.47159 * 30.11950 * 5 4 3 32 32 H 1.08999 * 109.47750 * 150.12126 * 5 4 3 33 33 H 0.96996 * 120.00127 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46240 * 60.00200 * 12 10 9 35 35 H 1.08991 * 109.47021 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.46942 * 300.00242 * 12 10 9 37 37 H 1.09002 * 113.41395 * 313.19707 * 13 10 9 38 38 H 1.08997 * 113.46758 * 105.56146 * 14 13 10 39 39 H 1.09000 * 113.51898 * 335.13170 * 14 13 10 40 40 H 0.96993 * 120.00423 * 354.88754 * 19 18 16 41 41 H 1.08993 * 113.47012 * 87.43421 * 24 15 14 42 42 H 1.09000 * 113.46758 * 217.87997 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7050 0.0057 5 6 4.7334 1.6361 0.0135 6 6 3.5976 -0.6608 0.0009 7 6 4.8029 -1.4981 0.0023 8 8 5.9038 -0.9798 0.0029 9 7 4.6903 -2.8412 0.0028 10 6 5.8935 -3.6770 0.0047 11 1 6.6729 -3.1933 -0.5840 12 6 6.3824 -3.8640 1.4425 13 6 5.5671 -5.0420 -0.6045 14 6 6.7581 -6.0090 -0.6567 15 7 6.2953 -6.4250 -1.9892 16 6 6.3897 -7.5546 -2.7576 17 1 6.8093 -8.4580 -2.3402 18 6 5.9460 -7.5385 -4.0727 19 7 6.1369 -8.5874 -4.8445 20 14 5.0781 -6.0281 -4.7472 21 1 4.8158 -6.2140 -6.1970 22 1 3.7909 -5.8361 -4.0319 23 1 5.9376 -4.8334 -4.5489 24 6 5.6924 -5.0917 -2.1362 25 7 2.2865 -1.0960 0.0005 26 1 1.9850 -2.0179 0.0006 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 5.0229 1.8644 -1.0123 31 1 4.4673 2.5585 0.5296 32 1 5.5672 1.1590 0.5286 33 1 3.8128 -3.2544 0.0026 34 1 5.6029 -4.3478 2.0312 35 1 7.2772 -4.4862 1.4439 36 1 6.6148 -2.8916 1.8765 37 1 4.6500 -5.4827 -0.2135 38 1 6.7057 -6.8028 0.0884 39 1 7.7256 -5.5071 -0.6703 40 1 6.6519 -9.3420 -4.5188 41 1 6.3785 -4.3471 -2.5399 42 1 4.7320 -5.1040 -2.6516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970437011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:00 Heat of formation + Delta-G solvation = 44.104230 kcal Electronic energy + Delta-G solvation = -23408.299166 eV Core-core repulsion = 20003.922549 eV Total energy + Delta-G solvation = -3404.376618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.31683 -41.06815 -39.87157 -36.45622 -34.70608 -34.30586 -33.32912 -31.80011 -30.06553 -29.53955 -27.67649 -26.93232 -25.42080 -23.52944 -22.41458 -21.76826 -21.49529 -20.64148 -19.59561 -19.35533 -17.59932 -17.26953 -16.90490 -16.81992 -15.98227 -15.87754 -15.53757 -15.20217 -15.05772 -14.79502 -14.40616 -14.04245 -13.94703 -13.70053 -13.35453 -13.30657 -13.27787 -13.19100 -13.16897 -12.99970 -12.55671 -12.39378 -12.15172 -11.75252 -11.52993 -11.33146 -11.13000 -11.03877 -10.93863 -10.85962 -10.22940 -9.39454 -9.26269 -8.64707 -5.51160 0.20706 1.32175 1.43672 1.62403 1.73972 1.80625 2.07608 2.22558 2.49553 2.94814 3.14937 3.31119 3.41935 3.76027 3.82411 4.00853 4.13824 4.16298 4.34250 4.42339 4.54247 4.55009 4.63532 4.65827 4.70675 4.75294 4.76668 4.81452 4.83594 4.99512 5.01306 5.05647 5.15484 5.17559 5.27353 5.36103 5.48735 5.55800 5.92188 6.27292 6.42466 6.66857 6.89557 7.07727 7.29324 8.24132 8.86960 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.003980 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.970750 B = 7034.143628 C = 7786.063466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.251 3.749 3 N -0.529 5.529 4 C 0.079 3.921 5 C -0.074 4.074 6 C -0.108 4.108 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.709 5.709 10 C 0.162 3.838 11 H 0.073 0.927 12 C -0.152 4.152 13 C -0.102 4.102 14 C 0.130 3.870 15 N -0.662 5.662 16 C -0.292 4.292 17 H 0.053 0.947 18 C -0.084 4.084 19 N -0.972 5.972 20 Si 1.108 2.892 21 H -0.305 1.305 22 H -0.264 1.264 23 H -0.271 1.271 24 C 0.092 3.908 25 N -0.540 5.540 26 H 0.437 0.563 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.408 0.592 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.247 0.753 41 H 0.042 0.958 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 18.165 15.527 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.013 4.013 3 N -0.251 5.251 4 C -0.055 4.055 5 C -0.132 4.132 6 C -0.224 4.224 7 C 0.384 3.616 8 O -0.435 6.435 9 N -0.361 5.361 10 C 0.057 3.943 11 H 0.092 0.908 12 C -0.210 4.210 13 C -0.122 4.122 14 C 0.005 3.995 15 N -0.390 5.390 16 C -0.419 4.419 17 H 0.071 0.929 18 C -0.276 4.276 19 N -0.617 5.617 20 Si 0.934 3.066 21 H -0.233 1.233 22 H -0.191 1.191 23 H -0.197 1.197 24 C -0.033 4.033 25 N -0.147 5.147 26 H 0.279 0.721 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.244 0.756 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.564 19.660 14.086 27.254 hybrid contribution 1.176 -2.702 0.867 3.072 sum -11.387 16.958 14.953 25.315 Atomic orbital electron populations 1.20546 0.80959 1.06013 1.05582 1.24235 0.97368 0.80840 0.98861 1.70106 1.01715 1.29901 1.23397 1.21355 0.93767 0.91033 0.99388 1.20251 0.92571 0.97279 1.03070 1.20707 0.84559 0.95150 1.21945 1.16923 0.86873 0.81844 0.75940 1.90801 1.27114 1.73636 1.51917 1.45827 1.10476 1.04955 1.74792 1.20833 0.86951 0.88626 0.97879 0.90835 1.22060 1.02398 1.02086 0.94443 1.23260 1.00625 0.94290 0.94002 1.22485 0.95597 0.94860 0.86580 1.46112 1.64675 1.09604 1.18654 1.20065 1.39244 0.88462 0.94148 0.92907 1.26996 1.02482 1.05663 0.92476 1.71006 1.44182 1.08208 1.38300 0.83267 0.76573 0.72362 0.74358 1.23329 1.19052 1.19691 1.23039 0.96751 0.86814 0.96690 1.43099 1.04763 1.11112 1.55690 0.72064 0.87794 0.88457 0.87775 0.90757 0.90174 0.90264 0.75636 0.90756 0.90691 0.92849 0.86247 0.92382 0.93212 0.94379 0.94017 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.51 71.23 0.75 0.28 16 2 C 0.25 4.06 8.12 138.20 1.12 5.19 16 3 N -0.53 -12.39 11.20 -175.58 -1.97 -14.36 16 4 C 0.08 1.98 7.15 41.97 0.30 2.28 16 5 C -0.07 -1.70 9.88 71.24 0.70 -1.00 16 6 C -0.11 -2.44 7.08 40.01 0.28 -2.16 16 7 C 0.60 15.05 7.75 86.47 0.67 15.72 16 8 O -0.56 -17.64 14.48 -4.28 -0.06 -17.70 16 9 N -0.71 -14.61 5.07 -446.43 -2.26 -16.88 16 10 C 0.16 3.88 2.47 44.99 0.11 3.99 16 11 H 0.07 2.13 7.32 -2.39 -0.02 2.12 16 12 C -0.15 -3.05 9.29 71.98 0.67 -2.38 16 13 C -0.10 -2.86 3.67 -10.37 -0.04 -2.90 16 14 C 0.13 4.56 7.33 83.18 0.61 5.17 16 15 N -0.66 -31.22 3.69 -737.86 -2.72 -33.94 16 16 C -0.29 -16.94 11.08 84.03 0.93 -16.00 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 18 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 19 N -0.97 -63.18 13.70 21.65 0.30 -62.88 16 20 Si 1.11 53.72 25.16 68.60 1.73 55.44 16 21 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 22 H -0.26 -11.34 6.51 99.48 0.65 -10.69 16 23 H -0.27 -12.27 6.21 99.48 0.62 -11.66 16 24 C 0.09 3.54 5.27 83.27 0.44 3.98 16 25 N -0.54 -8.05 6.07 -176.12 -1.07 -9.11 16 26 H 0.44 3.28 8.32 -92.71 -0.77 2.51 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.96 6.49 -2.39 -0.02 1.95 16 33 H 0.41 5.87 7.85 -92.71 -0.73 5.14 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.47 7.48 -2.39 -0.02 1.45 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.68 8.10 -2.39 -0.02 1.67 16 40 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 41 H 0.04 1.67 7.44 -2.39 -0.02 1.65 16 42 H 0.05 1.92 4.73 -2.39 -0.01 1.91 16 Total: -1.00 -80.59 342.09 0.32 -80.27 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -0.63 Total: 11.58 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.02 Total: 7.57 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -7.73 Total: -137.17 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.06 Total: -17.70 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 1.73 Total: 55.44 kcal Total: -80.59 0.32 -80.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970437011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.375 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds