Wall clock time and date at job start Tue Mar 31 2020 03:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38040 * 126.29775 * 2 1 4 4 C 1.47428 * 126.40940 * 359.96375 * 3 2 1 5 5 O 1.21606 * 120.00563 * 33.83096 * 4 3 2 6 6 N 1.34789 * 119.99742 * 213.83077 * 4 3 2 7 7 C 1.47423 * 125.64537 * 355.97688 * 6 4 3 8 8 C 1.54907 * 104.82847 * 155.90675 * 7 6 4 9 9 C 1.55155 * 101.61810 * 36.99151 * 8 7 6 10 10 H 1.09002 * 110.72305 * 82.88019 * 9 8 7 11 11 N 1.46507 * 110.71969 * 206.15540 * 9 8 7 12 12 C 1.46497 * 120.00085 * 59.99746 * 11 9 8 13 13 C 1.36938 * 119.99667 * 239.99714 * 11 9 8 14 14 H 1.08002 * 120.00190 * 24.73438 * 13 11 9 15 15 C 1.38809 * 120.00147 * 204.73239 * 13 11 9 16 16 N 1.31622 * 119.99862 * 6.51027 * 15 13 11 17 17 Si 1.86803 * 120.00381 * 186.51751 * 15 13 11 18 18 H 1.48494 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47365 * 119.99857 * 17 15 13 20 20 H 1.48498 * 109.46691 * 239.99915 * 17 15 13 21 21 C 1.47015 * 125.64773 * 176.01609 * 6 4 3 22 22 C 1.41290 * 107.17270 * 180.22284 * 3 2 1 23 23 N 1.30445 * 108.02066 * 359.59221 * 22 3 2 24 24 N 1.34262 * 126.28451 * 179.97438 * 2 1 3 25 25 C 1.46498 * 125.76056 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.47279 * 89.99312 * 1 2 3 27 27 H 1.08997 * 109.47332 * 209.99886 * 1 2 3 28 28 H 1.09004 * 109.46242 * 329.99871 * 1 2 3 29 29 H 1.09003 * 110.36671 * 37.07036 * 7 6 4 30 30 H 1.08999 * 110.36913 * 274.74522 * 7 6 4 31 31 H 1.08998 * 111.00303 * 155.08573 * 8 7 6 32 32 H 1.09000 * 111.00662 * 278.89681 * 8 7 6 33 33 H 1.09000 * 109.46805 * 95.17430 * 12 11 9 34 34 H 1.09002 * 109.46785 * 215.17251 * 12 11 9 35 35 H 1.08994 * 109.47247 * 335.16727 * 12 11 9 36 36 H 0.96993 * 119.99996 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.88513 * 300.44254 * 21 6 4 38 38 H 1.09008 * 109.88262 * 61.60860 * 21 6 4 39 39 H 1.07997 * 125.98552 * 179.73679 * 22 3 2 40 40 H 1.09001 * 109.47138 * 89.99989 * 25 24 2 41 41 H 1.08991 * 109.47233 * 210.00137 * 25 24 2 42 42 H 1.09000 * 109.46794 * 330.00887 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1125 0.0000 4 6 1.8860 2.5202 -0.0008 5 8 0.8697 2.8410 0.5849 6 7 2.6118 3.4516 -0.6506 7 6 3.9009 3.2184 -1.3270 8 6 4.0004 4.3420 -2.3888 9 6 3.3605 5.5393 -1.6376 10 1 4.0913 6.0233 -0.9898 11 7 2.7890 6.4998 -2.5849 12 6 1.7304 6.0788 -3.5060 13 6 3.2443 7.7910 -2.6093 14 1 4.2398 8.0193 -2.2581 15 6 2.4264 8.8065 -3.0853 16 7 1.1722 8.5518 -3.3928 17 14 3.1057 10.5346 -3.2898 18 1 4.5320 10.5577 -2.8774 19 1 2.9946 10.9450 -4.7125 20 1 2.3302 11.4748 -2.4413 21 6 2.2496 4.8684 -0.8017 22 6 3.6591 0.6496 -0.0053 23 7 3.6340 -0.6546 0.0007 24 7 2.3016 -1.0823 0.0005 25 6 1.8500 -2.4759 0.0006 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 3.9054 2.2403 -1.8080 30 1 4.7224 3.2957 -0.6148 31 1 5.0401 4.5498 -2.6413 32 1 3.4271 4.0887 -3.2805 33 1 0.7581 6.3222 -3.0777 34 1 1.8488 6.5980 -4.4571 35 1 1.7969 5.0031 -3.6687 36 1 0.6006 9.2614 -3.7251 37 1 1.2942 4.9536 -1.3194 38 1 2.1860 5.3413 0.1784 39 1 4.5450 1.2674 -0.0106 40 1 1.7383 -2.8217 -1.0271 41 1 2.5844 -3.0958 0.5148 42 1 0.8911 -2.5470 0.5139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971080376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:51 Heat of formation + Delta-G solvation = 53.285679 kcal Electronic energy + Delta-G solvation = -23707.228391 eV Core-core repulsion = 20303.249911 eV Total energy + Delta-G solvation = -3403.978480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50064 -40.66454 -38.72724 -36.52552 -34.66650 -33.41965 -32.91219 -31.24834 -29.80302 -28.22906 -28.03010 -27.64501 -25.35121 -24.10069 -22.62056 -21.60850 -20.74314 -19.89753 -18.93832 -18.31888 -17.50788 -16.91998 -16.72034 -16.58731 -16.19412 -15.56876 -15.19505 -15.00003 -14.81991 -14.40339 -14.32084 -14.04937 -13.90174 -13.61159 -13.53434 -13.36775 -13.20404 -13.02684 -13.00298 -12.75813 -12.46231 -12.36441 -12.19914 -12.05115 -11.92081 -11.77562 -11.42427 -10.92996 -10.63539 -10.37505 -9.76722 -9.46122 -8.76889 -7.81167 -5.33706 0.52091 1.17415 1.41187 1.49081 1.50137 1.60570 2.00755 2.30540 2.53308 3.31935 3.45391 3.59066 3.62086 3.83251 3.89021 4.00184 4.18224 4.31153 4.32429 4.38498 4.39415 4.50327 4.54170 4.61146 4.67924 4.70152 4.81617 4.92495 4.93595 5.05602 5.06850 5.24174 5.27564 5.33383 5.43195 5.48441 5.67238 5.73480 5.89690 6.34368 6.51518 6.63116 7.15250 7.21767 7.85387 8.31306 9.21828 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036270 B = 0.003362 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.810012 B = 8327.331008 C = 8667.277570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.149 3.851 3 C -0.316 4.316 4 C 0.602 3.398 5 O -0.593 6.593 6 N -0.608 5.608 7 C 0.105 3.895 8 C -0.140 4.140 9 C 0.166 3.834 10 H 0.085 0.915 11 N -0.603 5.603 12 C 0.184 3.816 13 C -0.263 4.263 14 H 0.080 0.920 15 C -0.054 4.054 16 N -0.941 5.941 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.292 1.292 20 H -0.296 1.296 21 C 0.102 3.898 22 C 0.087 3.913 23 N -0.318 5.318 24 N -0.360 5.360 25 C 0.084 3.916 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.062 0.938 33 H -0.003 1.003 34 H 0.020 0.980 35 H 0.024 0.976 36 H 0.247 0.753 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.211 0.789 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -22.858 5.087 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.015 3.985 3 C -0.331 4.331 4 C 0.393 3.607 5 O -0.475 6.475 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.180 4.180 9 C 0.058 3.942 10 H 0.103 0.897 11 N -0.324 5.324 12 C 0.039 3.961 13 C -0.393 4.393 14 H 0.098 0.902 15 C -0.249 4.249 16 N -0.588 5.588 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.219 1.219 20 H -0.223 1.223 21 C -0.023 4.023 22 C -0.100 4.100 23 N -0.138 5.138 24 N -0.139 5.139 25 C -0.055 4.055 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.015 0.985 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.228 0.772 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.365 -23.877 5.350 24.855 hybrid contribution -0.753 2.181 -0.196 2.316 sum 3.613 -21.695 5.154 22.590 Atomic orbital electron populations 1.20729 0.84861 1.05500 1.04768 1.21731 0.95752 0.86269 0.94726 1.19859 0.94534 0.92180 1.26504 1.17337 0.81893 0.84249 0.77182 1.90701 1.27799 1.82367 1.46609 1.48343 1.23526 1.08714 1.53433 1.22638 0.84593 0.99727 0.94716 1.23238 1.02578 0.94435 0.97718 1.21574 0.92715 0.89754 0.90206 0.89676 1.44081 1.43186 1.07571 1.37585 1.20421 0.90182 0.93204 0.92255 1.19675 0.97129 0.84023 1.38466 0.90208 1.25946 0.95426 1.01772 1.01752 1.70258 1.06243 1.32395 1.49895 0.85112 0.78234 0.79826 0.76725 1.18495 1.21946 1.22317 1.22421 0.99837 0.80675 0.99379 1.24424 0.97236 0.91858 0.96460 1.77121 0.97153 1.13279 1.26259 1.48675 1.03340 1.07516 1.54418 1.22388 1.02701 0.74971 1.05407 0.88647 0.87334 0.90247 0.89025 0.88434 0.88097 0.91943 0.98462 0.96155 0.95773 0.94364 0.94356 0.93595 0.77224 0.88689 0.87964 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.89 71.24 0.70 -1.13 16 2 C 0.15 3.44 7.00 42.14 0.29 3.73 16 3 C -0.32 -8.77 5.66 -20.15 -0.11 -8.88 16 4 C 0.60 21.04 7.66 86.66 0.66 21.70 16 5 O -0.59 -25.07 15.74 -4.05 -0.06 -25.13 16 6 N -0.61 -20.22 3.33 -815.56 -2.71 -22.94 16 7 C 0.11 2.58 5.35 86.85 0.46 3.04 16 8 C -0.14 -4.15 6.61 31.98 0.21 -3.94 16 9 C 0.17 6.47 3.43 46.19 0.16 6.63 16 10 H 0.09 3.20 7.95 -2.39 -0.02 3.18 16 11 N -0.60 -29.76 2.94 -696.06 -2.04 -31.80 16 12 C 0.18 9.32 7.48 127.77 0.96 10.28 16 13 C -0.26 -14.12 9.61 84.03 0.81 -13.31 16 14 H 0.08 4.06 7.84 -2.91 -0.02 4.03 16 15 C -0.05 -3.02 5.22 84.86 0.44 -2.58 16 16 N -0.94 -56.33 10.48 21.65 0.23 -56.10 16 17 Si 0.97 44.83 29.56 68.60 2.03 46.85 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 21 C 0.10 4.12 6.50 86.75 0.56 4.68 16 22 C 0.09 2.00 10.06 85.65 0.86 2.86 16 23 N -0.32 -7.35 12.50 -56.28 -0.70 -8.06 16 24 N -0.36 -6.98 3.98 -354.32 -1.41 -8.39 16 25 C 0.08 0.72 11.24 127.77 1.44 2.16 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 1.12 7.05 -2.39 -0.02 1.10 16 28 H 0.08 1.97 6.55 -2.39 -0.02 1.96 16 29 H 0.09 1.94 6.58 -2.39 -0.02 1.93 16 30 H 0.10 1.83 7.69 -2.39 -0.02 1.81 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.06 2.04 6.45 -2.39 -0.02 2.02 16 33 H 0.00 -0.17 7.25 -2.39 -0.02 -0.19 16 34 H 0.02 1.09 7.28 -2.39 -0.02 1.07 16 35 H 0.02 1.06 6.46 -2.39 -0.02 1.05 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.04 1.80 6.84 -2.39 -0.02 1.78 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.21 3.62 6.46 -2.91 -0.02 3.60 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.40 7.02 -2.39 -0.02 0.38 16 Total: -1.00 -75.97 336.01 3.80 -72.17 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.03 Total: 8.16 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 7.45 Total: 25.24 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.64 Total: -127.28 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -75.97 3.80 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971080376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.451 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds