Wall clock time and date at job start Tue Mar 31 2020 03:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30449 * 125.98751 * 2 1 4 4 N 1.39936 * 108.89703 * 180.26333 * 3 2 1 5 5 C 1.46503 * 125.75157 * 179.77784 * 4 3 2 6 6 C 1.34258 * 108.49022 * 359.75745 * 4 3 2 7 7 C 1.38041 * 107.41863 * 359.97438 * 6 4 3 8 8 C 1.47429 * 126.41164 * 179.97438 * 7 6 4 9 9 O 1.21607 * 119.99703 * 155.50127 * 8 7 6 10 10 N 1.34769 * 120.00351 * 335.49524 * 8 7 6 11 11 C 1.47431 * 125.64478 * 354.50895 * 10 8 7 12 12 C 1.54911 * 104.82832 * 204.09468 * 11 10 8 13 13 C 1.55159 * 101.58336 * 322.99139 * 12 11 10 14 14 H 1.08998 * 110.87487 * 277.06781 * 13 12 11 15 15 N 1.46498 * 110.71987 * 153.86949 * 13 12 11 16 16 C 1.46499 * 119.99631 * 305.02592 * 15 13 12 17 17 C 1.36933 * 120.00493 * 125.02480 * 15 13 12 18 18 H 1.08007 * 119.99463 * 334.86603 * 17 15 13 19 19 C 1.38813 * 120.00485 * 154.86412 * 17 15 13 20 20 N 1.31615 * 119.99612 * 4.63386 * 19 17 15 21 21 Si 1.86798 * 119.99977 * 184.63281 * 19 17 15 22 22 H 1.48498 * 109.46893 * 90.00281 * 21 19 17 23 23 H 1.48500 * 109.46995 * 209.99779 * 21 19 17 24 24 H 1.48495 * 109.47235 * 330.00110 * 21 19 17 25 25 C 1.47014 * 125.65214 * 174.47128 * 10 8 7 26 26 H 1.08993 * 109.47033 * 270.13324 * 1 2 3 27 27 H 1.09001 * 109.47216 * 30.14027 * 1 2 3 28 28 H 1.09000 * 109.46896 * 150.13526 * 1 2 3 29 29 H 1.08994 * 109.46843 * 269.97455 * 5 4 3 30 30 H 1.08994 * 109.47263 * 29.97830 * 5 4 3 31 31 H 1.09002 * 109.46886 * 149.97496 * 5 4 3 32 32 H 1.07997 * 126.28795 * 180.02562 * 6 4 3 33 33 H 1.08996 * 110.37145 * 322.93461 * 11 10 8 34 34 H 1.09002 * 110.36258 * 85.14803 * 11 10 8 35 35 H 1.09001 * 111.00050 * 204.91730 * 12 11 10 36 36 H 1.09000 * 111.00742 * 81.06859 * 12 11 10 37 37 H 1.09001 * 109.47322 * 264.74369 * 16 15 13 38 38 H 1.09004 * 109.47824 * 24.74625 * 16 15 13 39 39 H 1.09009 * 109.47454 * 144.74983 * 16 15 13 40 40 H 0.97003 * 119.99752 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.88434 * 59.55951 * 25 10 8 42 42 H 1.09007 * 110.01340 * 298.46640 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0061 5 6 4.7787 1.5292 -0.0126 6 6 3.6439 -0.6979 -0.0044 7 6 2.3373 -1.1432 0.0032 8 6 1.8917 -2.5485 0.0070 9 8 0.7969 -2.8380 0.4501 10 7 2.6976 -3.5123 -0.4806 11 6 3.9935 -3.2923 -1.1483 12 6 4.2020 -4.5470 -2.0327 13 6 3.6113 -5.6642 -1.1325 14 1 4.3453 -6.0025 -0.4012 15 7 3.1363 -6.7872 -1.9446 16 6 2.1685 -6.5557 -3.0198 17 6 3.5968 -8.0531 -1.6988 18 1 4.5582 -8.1959 -1.2278 19 6 2.8281 -9.1527 -2.0549 20 7 1.6995 -8.9822 -2.7102 21 14 3.3955 -10.8744 -1.6039 22 1 2.8544 -11.2404 -0.2704 23 1 2.9036 -11.8396 -2.6196 24 1 4.8794 -10.9118 -1.5633 25 6 2.4306 -4.9573 -0.4343 26 1 -0.3633 0.0024 1.0276 27 1 -0.3634 0.8887 -0.5160 28 1 -0.3633 -0.8912 -0.5117 29 1 5.0635 1.7472 -1.0419 30 1 4.5331 2.4586 0.5011 31 1 5.6082 1.0400 0.4981 32 1 4.5298 -1.3156 -0.0076 33 1 3.9546 -2.3951 -1.7660 34 1 4.7913 -3.2096 -0.4102 35 1 5.2613 -4.7185 -2.2239 36 1 3.6465 -4.4633 -2.9668 37 1 1.1609 -6.7417 -2.6480 38 1 2.2448 -5.5235 -3.3615 39 1 2.3795 -7.2298 -3.8500 40 1 1.1625 -9.7507 -2.9594 41 1 1.5020 -5.1798 -0.9601 42 1 2.3590 -5.2904 0.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971221371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:20 Heat of formation + Delta-G solvation = 79.407935 kcal Electronic energy + Delta-G solvation = -23696.668870 eV Core-core repulsion = 20293.823136 eV Total energy + Delta-G solvation = -3402.845734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51506 -39.31089 -37.23244 -34.79648 -34.08742 -31.87580 -30.62993 -29.64131 -29.51954 -27.74098 -26.09387 -25.95755 -23.81543 -22.55983 -21.56073 -20.40622 -19.17132 -19.05089 -17.06892 -16.95915 -16.26089 -15.99246 -15.61515 -15.09357 -14.72899 -14.24265 -13.97349 -13.54957 -13.53607 -13.29281 -13.05281 -12.78246 -12.54698 -12.36085 -12.27410 -12.23590 -12.08671 -11.77410 -11.43615 -10.95434 -10.86446 -10.79783 -10.54634 -10.33926 -10.28311 -9.92331 -9.83154 -9.56428 -9.45189 -8.73291 -8.53281 -8.19287 -6.79340 -5.76803 -3.24780 1.45630 2.16794 2.18372 3.31848 3.37941 3.43204 3.44416 3.57484 4.18671 4.45143 4.47272 4.73804 4.78859 4.94503 5.01536 5.03890 5.15317 5.28304 5.37004 5.44716 5.45824 5.65839 5.69702 5.79360 5.87622 5.91600 5.94573 6.01233 6.35518 6.39402 6.46026 6.57839 6.64184 6.76717 6.88736 6.90734 7.47514 7.48525 7.74835 7.85367 7.91689 8.37813 8.55805 9.21451 9.81631 10.31497 11.27249 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.003486 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.671416 B = 8029.559291 C = 8528.593146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.129 3.871 3 N -0.306 5.306 4 N -0.367 5.367 5 C 0.099 3.901 6 C 0.094 3.906 7 C -0.276 4.276 8 C 0.602 3.398 9 O -0.543 6.543 10 N -0.610 5.610 11 C 0.100 3.900 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.589 5.589 16 C 0.164 3.836 17 C -0.262 4.262 18 H 0.071 0.929 19 C 0.008 3.992 20 N -0.905 5.905 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.089 3.911 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.185 0.815 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.025 0.975 38 H -0.005 1.005 39 H 0.056 0.944 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.342 19.343 3.488 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 N -0.128 5.128 4 N -0.145 5.145 5 C -0.042 4.042 6 C -0.056 4.056 7 C -0.291 4.291 8 C 0.390 3.610 9 O -0.421 6.421 10 N -0.344 5.344 11 C -0.024 4.024 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.310 5.310 16 C 0.020 3.980 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.190 4.190 20 N -0.549 5.549 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.036 4.036 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.202 0.798 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.749 20.440 3.653 21.833 hybrid contribution 0.469 -1.806 0.251 1.883 sum 7.218 18.634 3.903 20.361 Atomic orbital electron populations 1.20250 0.85710 1.03479 1.03621 1.22444 0.97211 0.88768 0.95416 1.77140 0.86010 1.22635 1.27004 1.48269 1.06045 1.04770 1.55442 1.21950 0.83848 0.94666 1.03780 1.23331 0.99259 0.84962 0.98092 1.20294 0.92137 0.94546 1.22120 1.16899 0.83606 0.82858 0.77592 1.90758 1.20689 1.82708 1.47993 1.48354 1.20782 1.07408 1.57872 1.22421 0.85281 0.99476 0.95189 1.23366 1.01826 0.94586 0.99627 1.21350 0.92994 0.87549 0.91833 0.90402 1.43897 1.50498 1.02878 1.33742 1.20889 0.92472 0.93730 0.90935 1.19222 1.00142 0.82220 1.37556 0.91158 1.25187 0.95771 0.98453 0.99630 1.70099 1.14361 1.29137 1.41343 0.86241 0.77975 0.84233 0.78007 1.21289 1.21692 1.20501 1.22879 1.02125 0.77412 1.01135 0.89986 0.91110 0.89406 0.90293 0.89030 0.89165 0.79804 0.91398 0.92043 0.90502 0.90317 0.95650 0.98627 0.92575 0.93578 0.90868 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.81 36.01 0.35 -0.55 16 2 C 0.13 1.85 7.26 -82.02 -0.60 1.25 16 3 N -0.31 -4.12 12.50 33.90 0.42 -3.70 16 4 N -0.37 -3.88 3.98 -67.60 -0.27 -4.15 16 5 C 0.10 0.53 11.44 59.85 0.68 1.21 16 6 C 0.09 1.04 9.67 -16.56 -0.16 0.88 16 7 C -0.28 -4.03 5.79 -105.07 -0.61 -4.64 16 8 C 0.60 10.56 7.71 -12.52 -0.10 10.46 16 9 O -0.54 -11.35 15.97 5.27 0.08 -11.26 16 10 N -0.61 -10.14 3.33 -171.78 -0.57 -10.71 16 11 C 0.10 1.28 5.20 -2.52 -0.01 1.26 16 12 C -0.15 -2.37 6.59 -24.58 -0.16 -2.53 16 13 C 0.17 3.35 3.45 -66.10 -0.23 3.13 16 14 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 15 N -0.59 -14.27 2.94 -171.38 -0.50 -14.77 16 16 C 0.16 4.01 7.70 59.85 0.46 4.47 16 17 C -0.26 -6.97 9.61 -15.06 -0.14 -7.11 16 18 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 19 C 0.01 0.23 5.39 -17.43 -0.09 0.13 16 20 N -0.91 -25.98 10.10 55.49 0.56 -25.42 16 21 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.09 1.73 6.51 -3.07 -0.02 1.71 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.21 7.28 -51.93 -0.38 0.84 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.19 1.44 5.92 -52.49 -0.31 1.13 16 33 H 0.07 0.77 6.93 -51.93 -0.36 0.41 16 34 H 0.06 0.62 7.29 -51.93 -0.38 0.25 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.33 6.14 -51.93 -0.32 1.01 16 37 H 0.03 0.68 7.40 -51.93 -0.38 0.30 16 38 H 0.00 -0.10 6.13 -51.93 -0.32 -0.42 16 39 H 0.06 1.49 6.98 -51.92 -0.36 1.13 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.07 1.65 7.06 -51.92 -0.37 1.28 16 42 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -33.76 338.01 -6.92 -40.68 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.09 Total: -1.84 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.62 Total: 9.67 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.36 Total: -58.74 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.76 -6.92 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971221371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.090 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds