Wall clock time and date at job start Tue Mar 31 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30449 * 125.98751 * 2 1 4 4 N 1.39936 * 108.89703 * 180.26333 * 3 2 1 5 5 C 1.46503 * 125.75157 * 179.77784 * 4 3 2 6 6 C 1.34258 * 108.49022 * 359.75745 * 4 3 2 7 7 C 1.38041 * 107.41863 * 359.97438 * 6 4 3 8 8 C 1.47429 * 126.41164 * 179.97438 * 7 6 4 9 9 O 1.21607 * 119.99703 * 155.50127 * 8 7 6 10 10 N 1.34769 * 120.00351 * 335.49524 * 8 7 6 11 11 C 1.47431 * 125.64478 * 354.50895 * 10 8 7 12 12 C 1.54911 * 104.82832 * 204.09468 * 11 10 8 13 13 C 1.55159 * 101.58336 * 322.99139 * 12 11 10 14 14 H 1.08998 * 110.87487 * 277.06781 * 13 12 11 15 15 N 1.46498 * 110.71987 * 153.86949 * 13 12 11 16 16 C 1.46499 * 119.99631 * 305.02592 * 15 13 12 17 17 C 1.36933 * 120.00493 * 125.02480 * 15 13 12 18 18 H 1.08007 * 119.99463 * 334.86603 * 17 15 13 19 19 C 1.38813 * 120.00485 * 154.86412 * 17 15 13 20 20 N 1.31615 * 119.99612 * 4.63386 * 19 17 15 21 21 Si 1.86798 * 119.99977 * 184.63281 * 19 17 15 22 22 H 1.48498 * 109.46893 * 90.00281 * 21 19 17 23 23 H 1.48500 * 109.46995 * 209.99779 * 21 19 17 24 24 H 1.48495 * 109.47235 * 330.00110 * 21 19 17 25 25 C 1.47014 * 125.65214 * 174.47128 * 10 8 7 26 26 H 1.08993 * 109.47033 * 270.13324 * 1 2 3 27 27 H 1.09001 * 109.47216 * 30.14027 * 1 2 3 28 28 H 1.09000 * 109.46896 * 150.13526 * 1 2 3 29 29 H 1.08994 * 109.46843 * 269.97455 * 5 4 3 30 30 H 1.08994 * 109.47263 * 29.97830 * 5 4 3 31 31 H 1.09002 * 109.46886 * 149.97496 * 5 4 3 32 32 H 1.07997 * 126.28795 * 180.02562 * 6 4 3 33 33 H 1.08996 * 110.37145 * 322.93461 * 11 10 8 34 34 H 1.09002 * 110.36258 * 85.14803 * 11 10 8 35 35 H 1.09001 * 111.00050 * 204.91730 * 12 11 10 36 36 H 1.09000 * 111.00742 * 81.06859 * 12 11 10 37 37 H 1.09001 * 109.47322 * 264.74369 * 16 15 13 38 38 H 1.09004 * 109.47824 * 24.74625 * 16 15 13 39 39 H 1.09009 * 109.47454 * 144.74983 * 16 15 13 40 40 H 0.97003 * 119.99752 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.88434 * 59.55951 * 25 10 8 42 42 H 1.09007 * 110.01340 * 298.46640 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0061 5 6 4.7787 1.5292 -0.0126 6 6 3.6439 -0.6979 -0.0044 7 6 2.3373 -1.1432 0.0032 8 6 1.8917 -2.5485 0.0070 9 8 0.7969 -2.8380 0.4501 10 7 2.6976 -3.5123 -0.4806 11 6 3.9935 -3.2923 -1.1483 12 6 4.2020 -4.5470 -2.0327 13 6 3.6113 -5.6642 -1.1325 14 1 4.3453 -6.0025 -0.4012 15 7 3.1363 -6.7872 -1.9446 16 6 2.1685 -6.5557 -3.0198 17 6 3.5968 -8.0531 -1.6988 18 1 4.5582 -8.1959 -1.2278 19 6 2.8281 -9.1527 -2.0549 20 7 1.6995 -8.9822 -2.7102 21 14 3.3955 -10.8744 -1.6039 22 1 2.8544 -11.2404 -0.2704 23 1 2.9036 -11.8396 -2.6196 24 1 4.8794 -10.9118 -1.5633 25 6 2.4306 -4.9573 -0.4343 26 1 -0.3633 0.0024 1.0276 27 1 -0.3634 0.8887 -0.5160 28 1 -0.3633 -0.8912 -0.5117 29 1 5.0635 1.7472 -1.0419 30 1 4.5331 2.4586 0.5011 31 1 5.6082 1.0400 0.4981 32 1 4.5298 -1.3156 -0.0076 33 1 3.9546 -2.3951 -1.7660 34 1 4.7913 -3.2096 -0.4102 35 1 5.2613 -4.7185 -2.2239 36 1 3.6465 -4.4633 -2.9668 37 1 1.1609 -6.7417 -2.6480 38 1 2.2448 -5.5235 -3.3615 39 1 2.3795 -7.2298 -3.8500 40 1 1.1625 -9.7507 -2.9594 41 1 1.5020 -5.1798 -0.9601 42 1 2.3590 -5.2904 0.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971221371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:19 Heat of formation + Delta-G solvation = 56.292525 kcal Electronic energy + Delta-G solvation = -23697.671230 eV Core-core repulsion = 20293.823136 eV Total energy + Delta-G solvation = -3403.848093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46731 -40.64583 -38.72644 -36.53464 -34.92297 -33.56727 -31.91086 -31.00372 -30.36414 -29.18242 -28.06727 -26.92064 -25.20779 -24.10729 -22.58742 -21.52779 -20.72565 -20.12428 -18.95874 -18.07721 -17.51367 -17.20492 -16.80156 -16.44252 -16.11295 -15.50494 -15.24305 -14.95916 -14.76793 -14.42013 -14.32868 -14.09068 -13.92557 -13.74307 -13.33203 -13.20874 -13.12812 -12.99441 -12.97256 -12.73018 -12.46184 -12.35568 -12.15950 -12.06144 -11.90464 -11.76019 -11.40648 -10.93820 -10.59904 -10.35059 -9.79516 -9.46798 -8.77228 -7.83016 -5.32635 0.55228 1.08027 1.45633 1.48998 1.51167 1.59062 2.04627 2.33926 2.52849 3.31508 3.35252 3.61094 3.70620 3.81709 3.89126 4.07215 4.28439 4.32355 4.38194 4.39770 4.46193 4.48851 4.53963 4.68109 4.71500 4.75032 4.82478 4.91656 4.93774 4.95010 5.07262 5.26555 5.30479 5.39258 5.47209 5.49324 5.66989 5.78373 5.92119 6.34839 6.51527 6.66185 7.16062 7.23943 7.86005 8.31967 9.20558 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.003486 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.671416 B = 8029.559291 C = 8528.593146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.111 3.889 3 N -0.324 5.324 4 N -0.357 5.357 5 C 0.085 3.915 6 C 0.123 3.877 7 C -0.312 4.312 8 C 0.598 3.402 9 O -0.593 6.593 10 N -0.611 5.611 11 C 0.103 3.897 12 C -0.141 4.141 13 C 0.167 3.833 14 H 0.090 0.910 15 N -0.606 5.606 16 C 0.186 3.814 17 C -0.265 4.265 18 H 0.083 0.917 19 C -0.053 4.053 20 N -0.941 5.941 21 Si 0.971 3.029 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.262 1.262 25 C 0.100 3.900 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.225 0.775 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.061 0.939 37 H -0.012 1.012 38 H 0.021 0.979 39 H 0.029 0.971 40 H 0.247 0.753 41 H 0.030 0.970 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 21.374 4.007 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 N -0.147 5.147 4 N -0.134 5.134 5 C -0.053 4.053 6 C -0.030 4.030 7 C -0.327 4.327 8 C 0.390 3.610 9 O -0.475 6.475 10 N -0.343 5.343 11 C -0.019 4.019 12 C -0.181 4.181 13 C 0.058 3.942 14 H 0.108 0.892 15 N -0.327 5.327 16 C 0.041 3.959 17 C -0.395 4.395 18 H 0.101 0.899 19 C -0.247 4.247 20 N -0.587 5.587 21 Si 0.799 3.201 22 H -0.216 1.216 23 H -0.225 1.225 24 H -0.186 1.186 25 C -0.025 4.025 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.241 0.759 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.006 0.994 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.774 22.546 4.178 25.335 hybrid contribution -0.672 -2.294 0.113 2.393 sum 10.102 20.252 4.291 23.035 Atomic orbital electron populations 1.20199 0.85775 1.03230 1.03624 1.22611 0.97782 0.89173 0.95947 1.77094 0.87562 1.22528 1.27557 1.48728 1.06165 1.05405 1.53137 1.22463 0.82728 0.94524 1.05620 1.23752 0.98852 0.85355 0.95074 1.20098 0.94112 0.92587 1.25938 1.17388 0.82924 0.84101 0.76630 1.90722 1.22932 1.83624 1.50196 1.48359 1.22267 1.05710 1.58007 1.22713 0.84271 0.98994 0.95885 1.23240 1.02810 0.93762 0.98278 1.21584 0.92801 0.87244 0.92533 0.89233 1.44081 1.50365 1.03743 1.34536 1.20479 0.90846 0.94326 0.90245 1.19663 1.00477 0.83269 1.36099 0.89901 1.25986 0.96189 1.02296 1.00262 1.70301 1.15804 1.29524 1.43117 0.85204 0.78340 0.79595 0.76931 1.21618 1.22469 1.18618 1.22467 1.00413 0.79926 0.99741 0.89920 0.89348 0.91517 0.88460 0.88633 0.85698 0.75864 0.88862 0.87626 0.87660 0.92080 0.99391 0.96065 0.95236 0.94395 0.95114 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 9.81 71.24 0.70 -1.11 16 2 C 0.11 3.11 7.26 43.52 0.32 3.43 16 3 N -0.32 -8.07 12.50 -46.67 -0.58 -8.65 16 4 N -0.36 -6.10 3.98 -367.79 -1.46 -7.56 16 5 C 0.09 0.49 11.44 127.77 1.46 1.95 16 6 C 0.12 2.16 9.67 84.28 0.82 2.98 16 7 C -0.31 -8.60 5.79 -20.15 -0.12 -8.72 16 8 C 0.60 20.93 7.71 86.67 0.67 21.60 16 9 O -0.59 -25.98 15.97 -4.05 -0.06 -26.04 16 10 N -0.61 -19.49 3.33 -815.66 -2.71 -22.20 16 11 C 0.10 2.17 5.20 86.85 0.45 2.63 16 12 C -0.14 -3.88 6.59 31.99 0.21 -3.67 16 13 C 0.17 6.25 3.45 46.18 0.16 6.41 16 14 H 0.09 3.15 7.94 -2.39 -0.02 3.13 16 15 N -0.61 -29.54 2.94 -696.14 -2.05 -31.59 16 16 C 0.19 9.45 7.70 127.77 0.98 10.43 16 17 C -0.27 -14.08 9.61 84.03 0.81 -13.27 16 18 H 0.08 4.11 7.82 -2.91 -0.02 4.09 16 19 C -0.05 -2.92 5.39 84.86 0.46 -2.46 16 20 N -0.94 -56.17 10.10 21.65 0.22 -55.95 16 21 Si 0.97 44.49 29.56 68.60 2.03 46.52 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 C 0.10 3.96 6.51 86.73 0.56 4.53 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.98 7.28 -2.39 -0.02 1.96 16 29 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.23 1.96 5.92 -2.91 -0.02 1.94 16 33 H 0.09 1.59 6.93 -2.39 -0.02 1.58 16 34 H 0.11 1.41 7.29 -2.39 -0.02 1.39 16 35 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 1.92 6.14 -2.39 -0.01 1.90 16 37 H -0.01 -0.71 7.40 -2.39 -0.02 -0.73 16 38 H 0.02 0.94 6.13 -2.39 -0.01 0.93 16 39 H 0.03 1.62 6.98 -2.38 -0.02 1.60 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.03 1.46 7.06 -2.38 -0.02 1.45 16 42 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -79.08 338.01 3.88 -75.20 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.02 Total: 5.55 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 7.48 Total: 24.72 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -6.59 Total: -125.95 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.08 3.88 -75.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971221371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.494 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds