Wall clock time and date at job start Tue Mar 31 2020 04:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35316 * 126.12619 * 2 1 4 4 C 1.39865 * 107.92388 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.90152 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47003 * 124.98325 * 5 4 3 7 7 O 1.21280 * 119.99612 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99928 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64740 * 359.68776 * 8 6 5 10 10 C 1.55136 * 104.71956 * 155.82000 * 9 8 6 11 11 C 1.55153 * 101.48525 * 37.29589 * 10 9 8 12 12 H 1.08999 * 110.71819 * 82.69514 * 11 10 9 13 13 N 1.46505 * 110.86917 * 205.89581 * 11 10 9 14 14 C 1.46499 * 120.00081 * 53.61553 * 13 11 10 15 15 C 1.36932 * 120.00037 * 233.61106 * 13 11 10 16 16 H 1.08010 * 120.00132 * 324.66997 * 15 13 11 17 17 C 1.38809 * 120.00039 * 144.67125 * 15 13 11 18 18 N 1.31624 * 119.99862 * 157.56491 * 17 15 13 19 19 Si 1.86799 * 119.99890 * 337.56171 * 17 15 13 20 20 H 1.48500 * 109.47118 * 95.53563 * 19 17 15 21 21 H 1.48498 * 109.46991 * 215.53749 * 19 17 15 22 22 H 1.48499 * 109.47254 * 335.53404 * 19 17 15 23 23 C 1.47025 * 125.64929 * 180.02562 * 8 6 5 24 24 N 1.30845 * 108.20173 * 359.97438 * 4 3 2 25 25 N 1.34942 * 126.12923 * 179.97438 * 2 1 3 26 26 H 0.97001 * 126.04039 * 0.05082 * 25 2 1 27 27 H 1.08992 * 109.47416 * 90.00612 * 1 2 3 28 28 H 1.09005 * 109.47294 * 210.00811 * 1 2 3 29 29 H 1.09003 * 109.47644 * 330.00315 * 1 2 3 30 30 H 1.07999 * 126.03823 * 359.92671 * 3 2 1 31 31 H 1.09004 * 109.47114 * 244.98136 * 5 4 3 32 32 H 1.08996 * 109.47173 * 4.98174 * 5 4 3 33 33 H 1.08996 * 110.37265 * 274.74921 * 9 8 6 34 34 H 1.09003 * 110.36781 * 37.07714 * 9 8 6 35 35 H 1.09007 * 111.19104 * 279.18911 * 10 9 8 36 36 H 1.09003 * 110.93734 * 155.29263 * 10 9 8 37 37 H 1.08997 * 109.47135 * 88.31762 * 14 13 11 38 38 H 1.08989 * 109.47262 * 208.32085 * 14 13 11 39 39 H 1.09005 * 109.46881 * 328.32526 * 14 13 11 40 40 H 0.97004 * 119.99608 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.87903 * 300.43646 * 23 8 6 42 42 H 1.08997 * 109.87809 * 61.60331 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 0.0006 5 6 4.8542 1.5397 0.0013 6 6 5.7382 1.1741 1.1659 7 8 5.4094 0.2834 1.9205 8 7 6.8940 1.8369 1.3686 9 6 7.4157 2.9308 0.5293 10 6 8.3562 3.7329 1.4669 11 6 9.0010 2.5964 2.3034 12 1 9.8365 2.1481 1.7656 13 7 9.4356 3.0932 3.6113 14 6 8.4886 3.7981 4.4787 15 6 10.7270 2.8986 4.0231 16 1 11.2475 1.9902 3.7573 17 6 11.3672 3.8686 4.7820 18 7 12.3929 3.5411 5.5390 19 14 10.7730 5.6388 4.7288 20 1 9.8465 5.8843 5.8631 21 1 11.9370 6.5550 4.8331 22 1 10.0631 5.8844 3.4478 23 6 7.8468 1.5841 2.4595 24 7 3.6334 -0.6524 0.0015 25 7 2.3026 -1.0899 0.0005 26 1 2.0056 -2.0133 0.0002 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5140 29 1 -0.3634 0.8900 0.5138 30 1 1.9739 2.1211 -0.0011 31 1 5.4038 1.4008 -0.9297 32 1 4.5482 2.5820 0.0906 33 1 7.9730 2.5277 -0.3163 34 1 6.5996 3.5633 0.1800 35 1 7.7910 4.4140 2.1031 36 1 9.1102 4.2722 0.8936 37 1 7.9608 3.0766 5.1024 38 1 9.0300 4.4995 5.1134 39 1 7.7703 4.3425 3.8657 40 1 12.8400 4.2190 6.0696 41 1 7.3553 1.7280 3.4217 42 1 8.2326 0.5673 2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971322023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:30 Heat of formation + Delta-G solvation = 73.103332 kcal Electronic energy + Delta-G solvation = -23187.972706 eV Core-core repulsion = 19784.853584 eV Total energy + Delta-G solvation = -3403.119122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40418 -39.68106 -37.51171 -34.92832 -33.48849 -31.96462 -31.65480 -30.25231 -29.10712 -27.77165 -27.16217 -26.16112 -23.72119 -22.44083 -20.94942 -20.43607 -19.30474 -18.68475 -17.56876 -17.00619 -16.80865 -16.21313 -15.29327 -15.17230 -14.95243 -14.31548 -14.01027 -13.90696 -13.55957 -13.27292 -13.11962 -13.05227 -13.01702 -12.71458 -12.34887 -12.31864 -12.19322 -11.98108 -11.83569 -11.41908 -10.95433 -10.86119 -10.64255 -10.52209 -10.17867 -9.93748 -9.69408 -9.58236 -9.34920 -8.73052 -8.56434 -8.33069 -6.93072 -6.02576 -3.43833 1.74547 2.55353 2.71702 2.87287 3.29049 3.29864 3.44219 3.48687 4.35857 4.45142 4.48843 4.74515 4.77168 4.83294 4.99845 5.08973 5.10283 5.19974 5.27642 5.42801 5.44001 5.46089 5.51521 5.59336 5.69591 5.77267 5.91404 5.95107 6.12408 6.25873 6.37062 6.42651 6.45329 6.55509 6.64721 6.73552 6.81615 7.14968 7.60530 7.78297 7.98282 8.32390 8.42117 8.91409 9.65907 10.04154 11.12691 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.002987 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.404800 B = 9371.843777 C = 9471.650195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.265 4.265 4 C 0.090 3.910 5 C -0.056 4.056 6 C 0.527 3.473 7 O -0.529 6.529 8 N -0.616 5.616 9 C 0.099 3.901 10 C -0.157 4.157 11 C 0.172 3.828 12 H 0.088 0.912 13 N -0.597 5.597 14 C 0.107 3.893 15 C -0.273 4.273 16 H 0.082 0.918 17 C 0.034 3.966 18 N -0.898 5.898 19 Si 0.886 3.114 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.269 1.269 23 C 0.091 3.909 24 N -0.260 5.260 25 N -0.476 5.476 26 H 0.436 0.564 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.018 0.982 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 -1.823 -15.104 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.295 4.295 4 C -0.077 4.077 5 C -0.098 4.098 6 C 0.313 3.687 7 O -0.405 6.405 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.197 4.197 11 C 0.063 3.937 12 H 0.107 0.893 13 N -0.319 5.319 14 C -0.037 4.037 15 C -0.401 4.401 16 H 0.100 0.900 17 C -0.167 4.167 18 N -0.539 5.539 19 Si 0.717 3.283 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C -0.034 4.034 24 N -0.082 5.082 25 N -0.185 5.185 26 H 0.279 0.721 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.081 -3.330 -14.551 25.831 hybrid contribution -0.882 1.356 0.126 1.623 sum -21.963 -1.974 -14.425 26.350 Atomic orbital electron populations 1.20438 0.87348 1.03952 1.03247 1.21071 0.94526 0.87831 1.01477 1.21079 0.91372 0.99166 1.17845 1.21537 0.94492 0.91596 1.00108 1.20016 0.91813 0.99060 0.98867 1.19944 0.80482 0.81878 0.86356 1.90739 1.72154 1.30342 1.47272 1.48502 1.20601 1.36159 1.29884 1.22403 0.97456 0.88373 0.94155 1.23424 0.98721 0.99276 0.98308 1.21462 0.93925 0.91377 0.86979 0.89350 1.44007 1.08509 1.66446 1.12907 1.21349 0.92918 0.95584 0.93871 1.18810 0.87888 1.01730 1.31698 0.90048 1.25429 0.95693 0.97962 0.97604 1.69877 1.23882 1.33617 1.26535 0.86820 0.76721 0.86470 0.78307 1.21565 1.23123 1.19370 1.22664 0.90500 1.00374 0.89836 1.77445 0.95459 1.12478 1.22842 1.46341 1.04227 1.08154 1.59795 0.72078 0.90233 0.91159 0.89585 0.83567 0.87381 0.87125 0.91274 0.91133 0.90668 0.90065 0.96382 0.93554 0.94809 0.92622 0.91254 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.43 36.00 0.38 -0.09 16 2 C 0.08 0.76 7.21 -82.27 -0.59 0.16 16 3 C -0.27 -2.89 10.64 -40.01 -0.43 -3.32 16 4 C 0.09 1.21 6.02 -82.40 -0.50 0.71 16 5 C -0.06 -0.64 5.28 -29.03 -0.15 -0.80 16 6 C 0.53 8.45 7.84 -10.99 -0.09 8.36 16 7 O -0.53 -10.88 15.89 5.56 0.09 -10.79 16 8 N -0.62 -9.49 3.32 -170.38 -0.57 -10.06 16 9 C 0.10 1.20 6.70 -2.41 -0.02 1.18 16 10 C -0.16 -2.38 6.63 -24.46 -0.16 -2.55 16 11 C 0.17 3.23 3.43 -66.10 -0.23 3.01 16 12 H 0.09 1.68 7.95 -51.93 -0.41 1.26 16 13 N -0.60 -13.85 2.53 -171.39 -0.43 -14.28 16 14 C 0.11 2.33 8.47 59.85 0.51 2.84 16 15 C -0.27 -7.50 9.88 -15.06 -0.15 -7.64 16 16 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 17 C 0.03 0.96 5.31 -17.43 -0.09 0.87 16 18 N -0.90 -27.20 13.97 55.49 0.78 -26.43 16 19 Si 0.89 21.87 24.94 -169.99 -4.24 17.63 16 20 H -0.29 -6.97 6.67 56.52 0.38 -6.59 16 21 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.09 1.65 6.51 -3.07 -0.02 1.63 16 24 N -0.26 -3.87 12.04 33.67 0.41 -3.47 16 25 N -0.48 -5.22 7.36 33.47 0.25 -4.98 16 26 H 0.44 3.36 8.96 -182.61 -1.64 1.72 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 0.95 7.83 -51.93 -0.41 0.54 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 35 H 0.07 1.20 6.03 -51.92 -0.31 0.88 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 38 H 0.05 1.09 3.05 -51.94 -0.16 0.93 16 39 H 0.03 0.64 6.00 -51.93 -0.31 0.33 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 1.40 6.97 -51.93 -0.36 1.04 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -36.07 338.81 -7.52 -43.59 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.36 Total: -0.69 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.54 Total: 4.37 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.43 Total: -59.21 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.24 Total: 17.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.07 -7.52 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971322023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.692 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds