Wall clock time and date at job start Tue Mar 31 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35316 * 126.12619 * 2 1 4 4 C 1.39865 * 107.92388 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.90152 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47003 * 124.98325 * 5 4 3 7 7 O 1.21280 * 119.99612 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99928 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64740 * 359.68776 * 8 6 5 10 10 C 1.55136 * 104.71956 * 155.82000 * 9 8 6 11 11 C 1.55153 * 101.48525 * 37.29589 * 10 9 8 12 12 H 1.08999 * 110.71819 * 82.69514 * 11 10 9 13 13 N 1.46505 * 110.86917 * 205.89581 * 11 10 9 14 14 C 1.46499 * 120.00081 * 53.61553 * 13 11 10 15 15 C 1.36932 * 120.00037 * 233.61106 * 13 11 10 16 16 H 1.08010 * 120.00132 * 324.66997 * 15 13 11 17 17 C 1.38809 * 120.00039 * 144.67125 * 15 13 11 18 18 N 1.31624 * 119.99862 * 157.56491 * 17 15 13 19 19 Si 1.86799 * 119.99890 * 337.56171 * 17 15 13 20 20 H 1.48500 * 109.47118 * 95.53563 * 19 17 15 21 21 H 1.48498 * 109.46991 * 215.53749 * 19 17 15 22 22 H 1.48499 * 109.47254 * 335.53404 * 19 17 15 23 23 C 1.47025 * 125.64929 * 180.02562 * 8 6 5 24 24 N 1.30845 * 108.20173 * 359.97438 * 4 3 2 25 25 N 1.34942 * 126.12923 * 179.97438 * 2 1 3 26 26 H 0.97001 * 126.04039 * 0.05082 * 25 2 1 27 27 H 1.08992 * 109.47416 * 90.00612 * 1 2 3 28 28 H 1.09005 * 109.47294 * 210.00811 * 1 2 3 29 29 H 1.09003 * 109.47644 * 330.00315 * 1 2 3 30 30 H 1.07999 * 126.03823 * 359.92671 * 3 2 1 31 31 H 1.09004 * 109.47114 * 244.98136 * 5 4 3 32 32 H 1.08996 * 109.47173 * 4.98174 * 5 4 3 33 33 H 1.08996 * 110.37265 * 274.74921 * 9 8 6 34 34 H 1.09003 * 110.36781 * 37.07714 * 9 8 6 35 35 H 1.09007 * 111.19104 * 279.18911 * 10 9 8 36 36 H 1.09003 * 110.93734 * 155.29263 * 10 9 8 37 37 H 1.08997 * 109.47135 * 88.31762 * 14 13 11 38 38 H 1.08989 * 109.47262 * 208.32085 * 14 13 11 39 39 H 1.09005 * 109.46881 * 328.32526 * 14 13 11 40 40 H 0.97004 * 119.99608 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.87903 * 300.43646 * 23 8 6 42 42 H 1.08997 * 109.87809 * 61.60331 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 0.0006 5 6 4.8542 1.5397 0.0013 6 6 5.7382 1.1741 1.1659 7 8 5.4094 0.2834 1.9205 8 7 6.8940 1.8369 1.3686 9 6 7.4157 2.9308 0.5293 10 6 8.3562 3.7329 1.4669 11 6 9.0010 2.5964 2.3034 12 1 9.8365 2.1481 1.7656 13 7 9.4356 3.0932 3.6113 14 6 8.4886 3.7981 4.4787 15 6 10.7270 2.8986 4.0231 16 1 11.2475 1.9902 3.7573 17 6 11.3672 3.8686 4.7820 18 7 12.3929 3.5411 5.5390 19 14 10.7730 5.6388 4.7288 20 1 9.8465 5.8843 5.8631 21 1 11.9370 6.5550 4.8331 22 1 10.0631 5.8844 3.4478 23 6 7.8468 1.5841 2.4595 24 7 3.6334 -0.6524 0.0015 25 7 2.3026 -1.0899 0.0005 26 1 2.0056 -2.0133 0.0002 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5140 29 1 -0.3634 0.8900 0.5138 30 1 1.9739 2.1211 -0.0011 31 1 5.4038 1.4008 -0.9297 32 1 4.5482 2.5820 0.0906 33 1 7.9730 2.5277 -0.3163 34 1 6.5996 3.5633 0.1800 35 1 7.7910 4.4140 2.1031 36 1 9.1102 4.2722 0.8936 37 1 7.9608 3.0766 5.1024 38 1 9.0300 4.4995 5.1134 39 1 7.7703 4.3425 3.8657 40 1 12.8400 4.2190 6.0696 41 1 7.3553 1.7280 3.4217 42 1 8.2326 0.5673 2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971322023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:29 Heat of formation + Delta-G solvation = 46.317397 kcal Electronic energy + Delta-G solvation = -23189.134231 eV Core-core repulsion = 19784.853584 eV Total energy + Delta-G solvation = -3404.280647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.21763 -40.94207 -38.95361 -36.60289 -34.34885 -33.78293 -32.52680 -31.64357 -30.20409 -28.98017 -28.05423 -27.80181 -25.31762 -23.87843 -21.84009 -21.33373 -20.82749 -19.76406 -18.97615 -18.39518 -17.94618 -17.81648 -16.81952 -16.32112 -15.94758 -15.79128 -15.11065 -14.93517 -14.68934 -14.59464 -14.49934 -14.39308 -14.08127 -13.81260 -13.65068 -13.43714 -13.25617 -13.10158 -12.97058 -12.76324 -12.46837 -12.39037 -12.34237 -12.03375 -11.59232 -11.48603 -11.39772 -10.93137 -10.66209 -10.25436 -9.61078 -9.49533 -8.86548 -8.20532 -5.59494 0.96741 1.34021 1.44201 1.56787 1.66786 1.68477 2.00011 2.18117 2.43347 3.02819 3.30923 3.54417 3.66910 3.79710 3.89028 4.13631 4.20405 4.26751 4.35939 4.42427 4.45394 4.51632 4.54340 4.69960 4.72838 4.77520 4.79580 4.87123 4.89215 4.98740 5.03686 5.12470 5.25515 5.28303 5.30719 5.40008 5.70902 5.89533 6.15105 6.48752 6.60693 6.78726 6.92166 7.21261 7.58481 7.99378 8.98916 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.002987 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.404800 B = 9371.843777 C = 9471.650195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.086 3.914 3 C -0.284 4.284 4 C 0.072 3.928 5 C -0.046 4.046 6 C 0.521 3.479 7 O -0.585 6.585 8 N -0.615 5.615 9 C 0.104 3.896 10 C -0.147 4.147 11 C 0.165 3.835 12 H 0.079 0.921 13 N -0.609 5.609 14 C 0.106 3.894 15 C -0.265 4.265 16 H 0.041 0.959 17 C -0.026 4.026 18 N -0.951 5.951 19 Si 0.956 3.044 20 H -0.280 1.280 21 H -0.310 1.310 22 H -0.243 1.243 23 C 0.101 3.899 24 N -0.320 5.320 25 N -0.478 5.478 26 H 0.445 0.555 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.171 0.829 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.264 0.736 41 H 0.045 0.955 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.916 0.717 -17.688 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.313 4.313 4 C -0.095 4.095 5 C -0.087 4.087 6 C 0.311 3.689 7 O -0.465 6.465 8 N -0.349 5.349 9 C -0.017 4.017 10 C -0.187 4.187 11 C 0.057 3.943 12 H 0.097 0.903 13 N -0.332 5.332 14 C -0.037 4.037 15 C -0.395 4.395 16 H 0.059 0.941 17 C -0.223 4.223 18 N -0.594 5.594 19 Si 0.784 3.216 20 H -0.207 1.207 21 H -0.239 1.239 22 H -0.167 1.167 23 C -0.025 4.025 24 N -0.143 5.143 25 N -0.188 5.188 26 H 0.290 0.710 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.189 0.811 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.320 -0.779 -17.201 29.798 hybrid contribution 0.057 0.377 0.934 1.009 sum -24.263 -0.402 -16.267 29.214 Atomic orbital electron populations 1.20593 0.84111 1.05147 1.04790 1.21801 0.96410 0.86990 0.99101 1.21471 0.90558 1.00782 1.18456 1.21982 0.96089 0.91490 0.99936 1.20140 0.90553 1.00660 0.97314 1.20845 0.80445 0.80789 0.86839 1.90716 1.73407 1.32837 1.49547 1.48567 1.20002 1.36968 1.29337 1.22659 0.98500 0.87347 0.93217 1.23324 0.99314 0.97862 0.98174 1.21556 0.93956 0.93133 0.85656 0.90256 1.44046 1.07173 1.66950 1.15061 1.21390 0.92913 0.95324 0.94108 1.18674 0.89532 1.00282 1.31008 0.94120 1.26127 0.96278 1.02407 0.97445 1.70022 1.26261 1.34915 1.28237 0.85688 0.76108 0.80221 0.79542 1.20750 1.23916 1.16678 1.22277 0.90906 0.99105 0.90206 1.77345 0.97795 1.13905 1.25248 1.46401 1.03552 1.09236 1.59659 0.71023 0.88356 0.90003 0.88336 0.81111 0.84895 0.83270 0.88953 0.86571 0.90698 0.88637 0.96931 0.95004 0.91269 0.92736 0.93660 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.43 71.23 0.74 0.12 16 2 C 0.09 1.45 7.21 41.40 0.30 1.75 16 3 C -0.28 -5.45 10.64 21.99 0.23 -5.22 16 4 C 0.07 1.79 6.02 43.10 0.26 2.05 16 5 C -0.05 -0.90 5.28 29.10 0.15 -0.75 16 6 C 0.52 15.93 7.84 87.66 0.69 16.62 16 7 O -0.59 -24.45 15.89 -3.03 -0.05 -24.50 16 8 N -0.61 -17.63 3.32 -811.35 -2.70 -20.33 16 9 C 0.10 2.01 6.70 86.93 0.58 2.60 16 10 C -0.15 -3.90 6.63 32.06 0.21 -3.68 16 11 C 0.16 6.08 3.43 46.18 0.16 6.24 16 12 H 0.08 3.04 7.95 -2.39 -0.02 3.02 16 13 N -0.61 -28.22 2.53 -696.17 -1.76 -29.98 16 14 C 0.11 4.50 8.47 127.77 1.08 5.58 16 15 C -0.27 -15.02 9.88 84.03 0.83 -14.19 16 16 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 17 C -0.03 -1.52 5.31 84.86 0.45 -1.07 16 18 N -0.95 -59.64 13.97 21.65 0.30 -59.33 16 19 Si 0.96 45.08 24.94 68.60 1.71 46.79 16 20 H -0.28 -12.76 6.67 99.48 0.66 -12.09 16 21 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 22 H -0.24 -10.37 7.11 99.48 0.71 -9.66 16 23 C 0.10 3.70 6.51 86.73 0.56 4.26 16 24 N -0.32 -9.44 12.04 -47.38 -0.57 -10.02 16 25 N -0.48 -10.12 7.36 -48.01 -0.35 -10.48 16 26 H 0.44 6.70 8.96 -213.33 -1.91 4.79 16 27 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.15 1.74 7.83 -2.39 -0.02 1.72 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.12 1.32 7.48 -2.39 -0.02 1.30 16 35 H 0.07 2.02 6.03 -2.38 -0.01 2.01 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.30 16 37 H 0.01 0.54 7.84 -2.39 -0.02 0.52 16 38 H 0.03 1.44 3.05 -2.39 -0.01 1.43 16 39 H 0.07 2.42 6.00 -2.38 -0.01 2.40 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.04 1.87 6.97 -2.39 -0.02 1.85 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -84.26 338.81 1.92 -82.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -0.92 Total: 11.20 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.26 Total: 14.31 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -5.08 Total: -130.14 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.71 Total: 46.79 kcal Total: -84.26 1.92 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971322023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.653 kcal (2) G-P(sol) polarization free energy of solvation -84.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds