Wall clock time and date at job start Tue Mar 31 2020 03:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39865 * 125.90226 * 2 1 4 4 C 1.35315 * 107.92324 * 179.97438 * 3 2 1 5 5 N 1.34941 * 107.74469 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03587 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47125 * 124.99597 * 6 5 4 8 8 O 1.21278 * 120.00042 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00111 * 179.72603 * 7 6 5 10 10 C 1.47426 * 125.64596 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83275 * 204.09480 * 10 9 7 12 12 C 1.55153 * 101.58202 * 322.99030 * 11 10 9 13 13 H 1.08998 * 110.72355 * 277.14183 * 12 11 10 14 14 N 1.46499 * 110.72155 * 154.04149 * 12 11 10 15 15 C 1.46500 * 119.99843 * 301.45464 * 14 12 11 16 16 C 1.36937 * 119.99806 * 121.45834 * 14 12 11 17 17 H 1.08000 * 120.00337 * 23.48629 * 16 14 12 18 18 C 1.38817 * 119.99785 * 203.48839 * 16 14 12 19 19 N 1.31626 * 119.99981 * 15.10456 * 18 16 14 20 20 Si 1.86798 * 120.00099 * 195.10700 * 18 16 14 21 21 H 1.48504 * 109.47062 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47225 * 119.99991 * 20 18 16 23 23 H 1.48498 * 109.46913 * 240.00094 * 20 18 16 24 24 C 1.47018 * 125.65349 * 179.71779 * 9 7 6 25 25 N 1.30835 * 125.89884 * 180.29490 * 2 1 3 26 26 H 1.09003 * 109.47354 * 90.00602 * 1 2 3 27 27 H 1.08997 * 109.47652 * 210.00363 * 1 2 3 28 28 H 1.08995 * 109.47309 * 330.00688 * 1 2 3 29 29 H 1.08003 * 126.03669 * 359.97438 * 3 2 1 30 30 H 1.07997 * 126.12863 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47528 * 4.99837 * 6 5 4 32 32 H 1.09001 * 109.46970 * 244.99230 * 6 5 4 33 33 H 1.09007 * 110.37028 * 322.93165 * 10 9 7 34 34 H 1.08999 * 110.36674 * 85.14520 * 10 9 7 35 35 H 1.09002 * 111.00697 * 81.06457 * 11 10 9 36 36 H 1.09000 * 111.00830 * 204.87749 * 11 10 9 37 37 H 1.09002 * 109.46919 * 95.21354 * 15 14 12 38 38 H 1.09001 * 109.46842 * 215.20853 * 15 14 12 39 39 H 1.09000 * 109.47509 * 335.21159 * 15 14 12 40 40 H 0.97000 * 119.99872 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.88119 * 298.39933 * 24 9 7 42 42 H 1.09000 * 109.88088 * 59.55604 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7898 -1.5008 0.0003 7 6 4.7127 -2.4552 1.1640 8 8 3.7643 -2.4156 1.9189 9 7 5.6947 -3.3567 1.3625 10 6 6.8958 -3.5176 0.5229 11 6 7.3472 -4.9816 0.7530 12 6 7.0335 -5.1710 2.2606 13 1 7.8420 -4.7756 2.8755 14 7 6.7951 -6.5836 2.5670 15 6 5.7236 -7.3110 1.8820 16 6 7.5738 -7.2241 3.4936 17 1 8.0849 -6.6547 4.2557 18 6 7.7062 -8.6054 3.4532 19 7 7.3426 -9.2702 2.3770 20 14 8.4004 -9.5205 4.9263 21 1 8.7311 -8.5504 6.0009 22 1 7.3928 -10.4898 5.4267 23 1 9.6298 -10.2488 4.5221 24 6 5.7488 -4.3382 2.4557 25 7 2.2741 -1.0598 -0.0055 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.9923 2.1597 -0.0004 30 1 4.4891 1.3484 0.0003 31 1 5.6884 -0.8905 0.0900 32 1 4.8258 -2.0659 -0.9312 33 1 6.6493 -3.3572 -0.5267 34 1 7.6753 -2.8244 0.8390 35 1 6.7636 -5.6709 0.1429 36 1 8.4134 -5.0970 0.5577 37 1 6.1352 -7.8392 1.0220 38 1 5.2752 -8.0289 2.5688 39 1 4.9633 -6.6061 1.5457 40 1 7.4348 -10.2354 2.3489 41 1 5.7810 -3.8226 3.4156 42 1 4.8764 -4.9902 2.4120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972362761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:28 Heat of formation + Delta-G solvation = 81.404121 kcal Electronic energy + Delta-G solvation = -23250.775418 eV Core-core repulsion = 19848.016246 eV Total energy + Delta-G solvation = -3402.759173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28845 -39.72879 -37.48410 -34.84811 -33.96565 -31.77160 -30.58465 -29.89738 -29.49274 -28.05651 -26.17313 -25.93121 -23.47020 -22.37193 -21.25979 -20.14062 -19.35658 -19.08961 -17.32185 -17.04508 -16.90545 -16.05127 -15.53871 -14.86890 -14.53838 -14.34583 -14.07569 -13.70773 -13.43255 -13.35822 -13.22366 -12.90892 -12.68975 -12.47509 -12.36274 -12.15539 -12.13299 -11.77300 -11.44132 -11.04056 -10.82918 -10.63143 -10.53566 -10.51860 -10.27845 -9.97098 -9.92219 -9.84869 -9.18819 -8.64034 -8.60145 -8.42408 -6.85358 -5.80589 -3.28116 1.80818 2.29214 2.63542 2.76987 3.11873 3.34161 3.42209 3.43923 4.27880 4.42863 4.47241 4.64814 4.80009 4.86024 4.95366 5.16024 5.20639 5.27425 5.45049 5.48705 5.51912 5.55147 5.68233 5.73737 5.76926 5.83469 5.93780 6.01876 6.24073 6.32194 6.46242 6.56869 6.63658 6.76024 6.81683 6.88487 7.28958 7.61917 7.67197 7.72562 7.74427 8.22384 8.31471 9.13983 9.76810 10.25728 11.24030 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035846 B = 0.002957 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.924541 B = 9465.479451 C = 9756.524646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 C -0.270 4.270 4 C 0.052 3.948 5 N -0.362 5.362 6 C 0.121 3.879 7 C 0.510 3.490 8 O -0.516 6.516 9 N -0.611 5.611 10 C 0.095 3.905 11 C -0.150 4.150 12 C 0.173 3.827 13 H 0.079 0.921 14 N -0.585 5.585 15 C 0.157 3.843 16 C -0.262 4.262 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.089 3.911 25 N -0.262 5.262 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.172 0.828 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.003 0.997 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 19.411 -8.259 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.300 4.300 4 C -0.093 4.093 5 N -0.144 5.144 6 C -0.004 4.004 7 C 0.295 3.705 8 O -0.391 6.391 9 N -0.347 5.347 10 C -0.029 4.029 11 C -0.191 4.191 12 C 0.063 3.937 13 H 0.097 0.903 14 N -0.305 5.305 15 C 0.013 3.987 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C -0.036 4.036 25 N -0.084 5.084 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.190 0.810 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.578 17.894 -7.868 20.077 hybrid contribution 0.631 0.282 0.663 0.958 sum -3.947 18.176 -7.205 19.947 Atomic orbital electron populations 1.20133 0.86843 1.03243 1.02635 1.22405 0.97048 0.90874 1.00366 1.21334 0.91607 0.99637 1.17382 1.22500 0.99805 0.84510 1.02504 1.48020 1.05011 1.04183 1.57149 1.21458 0.85704 0.93574 0.99698 1.20059 0.82332 0.81522 0.86552 1.90783 1.31580 1.70163 1.46595 1.48482 1.21503 1.34633 1.30080 1.22454 0.86846 0.99272 0.94285 1.23385 1.01878 0.93015 1.00785 1.21290 0.93119 0.86260 0.93044 0.90297 1.43862 1.35485 1.04526 1.46664 1.20806 0.87953 0.92920 0.97029 1.19235 1.24959 0.89946 1.05007 0.91208 1.25027 0.99924 0.97310 0.97087 1.70086 1.51537 1.07058 1.25910 0.86182 0.78231 0.79800 0.82281 1.20235 1.21528 1.21695 1.22774 1.02178 0.90170 0.88432 1.77495 0.85913 1.22361 1.22671 0.90793 0.90922 0.90647 0.83646 0.81035 0.85971 0.86989 0.91362 0.91349 0.90518 0.90189 0.94732 0.94120 0.97805 0.93682 0.92089 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.00 0.38 -0.30 16 2 C 0.06 0.80 7.22 -82.41 -0.59 0.21 16 3 C -0.27 -2.99 10.74 -40.01 -0.43 -3.42 16 4 C 0.05 0.55 11.45 -17.23 -0.20 0.35 16 5 N -0.36 -4.85 3.39 -62.55 -0.21 -5.06 16 6 C 0.12 1.34 6.00 -5.19 -0.03 1.31 16 7 C 0.51 8.07 7.88 -10.98 -0.09 7.98 16 8 O -0.52 -10.68 16.05 5.56 0.09 -10.59 16 9 N -0.61 -9.31 3.33 -170.51 -0.57 -9.88 16 10 C 0.09 1.13 6.69 -2.53 -0.02 1.11 16 11 C -0.15 -2.37 6.65 -24.58 -0.16 -2.53 16 12 C 0.17 3.31 3.42 -66.09 -0.23 3.08 16 13 H 0.08 1.48 7.93 -51.93 -0.41 1.06 16 14 N -0.59 -14.07 2.93 -171.38 -0.50 -14.57 16 15 C 0.16 3.81 7.70 59.85 0.46 4.27 16 16 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 17 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 18 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 19 N -0.90 -25.68 10.86 55.49 0.60 -25.08 16 20 Si 0.91 21.43 29.58 -169.99 -5.03 16.40 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.09 1.62 6.41 -3.06 -0.02 1.60 16 25 N -0.26 -4.24 11.66 33.67 0.39 -3.85 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.12 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.11 1.05 7.84 -51.93 -0.41 0.64 16 33 H 0.07 0.63 7.47 -51.92 -0.39 0.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.89 7.32 -51.93 -0.38 0.51 16 38 H 0.04 1.07 7.43 -51.93 -0.39 0.68 16 39 H 0.00 0.08 6.30 -51.93 -0.33 -0.25 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.53 6.15 -51.93 -0.32 1.21 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -34.95 345.29 -7.53 -42.48 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.35 Total: -1.67 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.16 Total: 6.62 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.29 Total: -58.44 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.95 -7.53 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972362761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.884 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds