Wall clock time and date at job start Tue Mar 31 2020 03:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39865 * 125.90226 * 2 1 4 4 C 1.35315 * 107.92324 * 179.97438 * 3 2 1 5 5 N 1.34941 * 107.74469 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03587 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47125 * 124.99597 * 6 5 4 8 8 O 1.21278 * 120.00042 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00111 * 179.72603 * 7 6 5 10 10 C 1.47426 * 125.64596 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83275 * 204.09480 * 10 9 7 12 12 C 1.55153 * 101.58202 * 322.99030 * 11 10 9 13 13 H 1.08998 * 110.72355 * 277.14183 * 12 11 10 14 14 N 1.46499 * 110.72155 * 154.04149 * 12 11 10 15 15 C 1.46500 * 119.99843 * 301.45464 * 14 12 11 16 16 C 1.36937 * 119.99806 * 121.45834 * 14 12 11 17 17 H 1.08000 * 120.00337 * 23.48629 * 16 14 12 18 18 C 1.38817 * 119.99785 * 203.48839 * 16 14 12 19 19 N 1.31626 * 119.99981 * 15.10456 * 18 16 14 20 20 Si 1.86798 * 120.00099 * 195.10700 * 18 16 14 21 21 H 1.48504 * 109.47062 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47225 * 119.99991 * 20 18 16 23 23 H 1.48498 * 109.46913 * 240.00094 * 20 18 16 24 24 C 1.47018 * 125.65349 * 179.71779 * 9 7 6 25 25 N 1.30835 * 125.89884 * 180.29490 * 2 1 3 26 26 H 1.09003 * 109.47354 * 90.00602 * 1 2 3 27 27 H 1.08997 * 109.47652 * 210.00363 * 1 2 3 28 28 H 1.08995 * 109.47309 * 330.00688 * 1 2 3 29 29 H 1.08003 * 126.03669 * 359.97438 * 3 2 1 30 30 H 1.07997 * 126.12863 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47528 * 4.99837 * 6 5 4 32 32 H 1.09001 * 109.46970 * 244.99230 * 6 5 4 33 33 H 1.09007 * 110.37028 * 322.93165 * 10 9 7 34 34 H 1.08999 * 110.36674 * 85.14520 * 10 9 7 35 35 H 1.09002 * 111.00697 * 81.06457 * 11 10 9 36 36 H 1.09000 * 111.00830 * 204.87749 * 11 10 9 37 37 H 1.09002 * 109.46919 * 95.21354 * 15 14 12 38 38 H 1.09001 * 109.46842 * 215.20853 * 15 14 12 39 39 H 1.09000 * 109.47509 * 335.21159 * 15 14 12 40 40 H 0.97000 * 119.99872 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.88119 * 298.39933 * 24 9 7 42 42 H 1.09000 * 109.88088 * 59.55604 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7898 -1.5008 0.0003 7 6 4.7127 -2.4552 1.1640 8 8 3.7643 -2.4156 1.9189 9 7 5.6947 -3.3567 1.3625 10 6 6.8958 -3.5176 0.5229 11 6 7.3472 -4.9816 0.7530 12 6 7.0335 -5.1710 2.2606 13 1 7.8420 -4.7756 2.8755 14 7 6.7951 -6.5836 2.5670 15 6 5.7236 -7.3110 1.8820 16 6 7.5738 -7.2241 3.4936 17 1 8.0849 -6.6547 4.2557 18 6 7.7062 -8.6054 3.4532 19 7 7.3426 -9.2702 2.3770 20 14 8.4004 -9.5205 4.9263 21 1 8.7311 -8.5504 6.0009 22 1 7.3928 -10.4898 5.4267 23 1 9.6298 -10.2488 4.5221 24 6 5.7488 -4.3382 2.4557 25 7 2.2741 -1.0598 -0.0055 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5137 29 1 1.9923 2.1597 -0.0004 30 1 4.4891 1.3484 0.0003 31 1 5.6884 -0.8905 0.0900 32 1 4.8258 -2.0659 -0.9312 33 1 6.6493 -3.3572 -0.5267 34 1 7.6753 -2.8244 0.8390 35 1 6.7636 -5.6709 0.1429 36 1 8.4134 -5.0970 0.5577 37 1 6.1352 -7.8392 1.0220 38 1 5.2752 -8.0289 2.5688 39 1 4.9633 -6.6061 1.5457 40 1 7.4348 -10.2354 2.3489 41 1 5.7810 -3.8226 3.4156 42 1 4.8764 -4.9902 2.4120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972362761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:27 Heat of formation + Delta-G solvation = 57.571248 kcal Electronic energy + Delta-G solvation = -23251.808889 eV Core-core repulsion = 19848.016246 eV Total energy + Delta-G solvation = -3403.792644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16381 -40.97433 -38.92480 -36.57399 -34.87765 -33.50336 -31.68891 -31.14581 -30.43541 -29.39243 -28.11142 -27.05431 -25.01184 -23.80633 -22.08428 -21.18639 -20.81964 -20.18805 -18.97582 -18.35895 -17.91414 -17.49321 -16.79071 -16.40322 -15.77903 -15.55014 -15.14502 -15.05749 -14.86860 -14.53800 -14.41800 -14.16810 -13.92375 -13.76481 -13.43542 -13.25336 -13.01553 -12.92976 -12.90909 -12.88482 -12.59874 -12.40544 -12.27386 -12.06393 -11.84581 -11.49048 -11.42875 -11.13710 -10.67558 -10.12832 -9.70407 -9.45691 -8.83641 -7.86771 -5.35899 0.95091 1.44929 1.46915 1.47788 1.49664 1.57462 1.92917 2.00587 2.49328 3.24680 3.33845 3.54939 3.67748 3.82477 3.99334 4.02395 4.07787 4.13496 4.26185 4.33400 4.44596 4.45893 4.64231 4.72841 4.82056 4.82714 4.89518 4.95045 4.98637 5.03948 5.11148 5.23289 5.25618 5.29822 5.38988 5.61563 5.63804 5.79404 6.13705 6.28807 6.48117 6.85458 7.04113 7.10061 7.80307 8.25844 9.16850 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035846 B = 0.002957 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.924541 B = 9465.479451 C = 9756.524646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.044 3.956 3 C -0.284 4.284 4 C 0.060 3.940 5 N -0.376 5.376 6 C 0.126 3.874 7 C 0.504 3.496 8 O -0.576 6.576 9 N -0.610 5.610 10 C 0.103 3.897 11 C -0.144 4.144 12 C 0.166 3.834 13 H 0.086 0.914 14 N -0.602 5.602 15 C 0.180 3.820 16 C -0.267 4.267 17 H 0.075 0.925 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.296 1.296 23 H -0.289 1.289 24 C 0.100 3.900 25 N -0.330 5.330 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.172 0.828 30 H 0.219 0.781 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.013 0.987 38 H 0.008 0.992 39 H 0.019 0.981 40 H 0.249 0.751 41 H 0.053 0.947 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 22.571 -9.276 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C -0.313 4.313 4 C -0.084 4.084 5 N -0.158 5.158 6 C 0.002 3.998 7 C 0.293 3.707 8 O -0.455 6.455 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.184 4.184 12 C 0.057 3.943 13 H 0.104 0.896 14 N -0.324 5.324 15 C 0.035 3.965 16 C -0.397 4.397 17 H 0.093 0.907 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.223 1.223 23 H -0.216 1.216 24 C -0.025 4.025 25 N -0.153 5.153 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.189 0.811 30 H 0.236 0.764 31 H 0.193 0.807 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.852 21.107 -8.912 23.088 hybrid contribution 0.073 -0.613 0.992 1.168 sum -2.779 20.494 -7.920 22.146 Atomic orbital electron populations 1.20239 0.85389 1.03498 1.03672 1.23030 0.98421 0.91357 0.99461 1.21761 0.91767 1.00295 1.17494 1.23302 1.01300 0.83776 1.00054 1.48234 1.04567 1.05446 1.57604 1.21738 0.86969 0.93479 0.97623 1.21029 0.81017 0.81597 0.87091 1.90760 1.33813 1.71882 1.49026 1.48545 1.22703 1.33761 1.29475 1.22669 0.86179 0.96865 0.96078 1.23221 1.02379 0.95627 0.97130 1.21487 0.93564 0.83463 0.95737 0.89631 1.44021 1.35257 1.06385 1.46708 1.20430 0.88265 0.92496 0.95349 1.19574 1.24186 0.90413 1.05511 0.90742 1.25771 1.01093 0.98218 0.99422 1.70229 1.53328 1.06816 1.27619 0.85202 0.77152 0.78450 0.79597 1.18988 1.22272 1.21600 1.22351 1.00123 0.90392 0.89658 1.77409 0.87870 1.24547 1.25456 0.89313 0.92548 0.88433 0.81081 0.76400 0.80689 0.84940 0.87427 0.87556 0.92749 0.89030 0.96832 0.97274 0.96214 0.94226 0.92870 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.45 71.23 0.74 -0.57 16 2 C 0.04 1.14 7.22 43.10 0.31 1.45 16 3 C -0.28 -5.59 10.74 21.99 0.24 -5.35 16 4 C 0.06 1.05 11.45 83.54 0.96 2.01 16 5 N -0.38 -9.16 3.39 -351.80 -1.19 -10.35 16 6 C 0.13 2.31 6.00 85.63 0.51 2.82 16 7 C 0.50 15.12 7.88 87.66 0.69 15.81 16 8 O -0.58 -24.16 16.05 -3.02 -0.05 -24.21 16 9 N -0.61 -17.34 3.33 -811.76 -2.70 -20.04 16 10 C 0.10 2.01 6.69 86.86 0.58 2.59 16 11 C -0.14 -4.23 6.65 31.99 0.21 -4.02 16 12 C 0.17 6.24 3.42 46.18 0.16 6.39 16 13 H 0.09 3.09 7.93 -2.39 -0.02 3.07 16 14 N -0.60 -29.51 2.93 -696.13 -2.04 -31.55 16 15 C 0.18 9.06 7.70 127.77 0.98 10.05 16 16 C -0.27 -14.32 9.59 84.03 0.81 -13.51 16 17 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 18 C -0.05 -2.73 5.06 84.86 0.43 -2.30 16 19 N -0.93 -54.71 10.86 21.65 0.24 -54.47 16 20 Si 0.97 44.64 29.58 68.60 2.03 46.67 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 C 0.10 3.67 6.41 86.73 0.56 4.22 16 25 N -0.33 -10.60 11.66 -47.39 -0.55 -11.15 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.22 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.18 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.13 1.90 7.84 -2.39 -0.02 1.88 16 33 H 0.11 1.36 7.47 -2.38 -0.02 1.35 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.86 7.28 -2.39 -0.02 1.84 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.01 0.73 7.32 -2.39 -0.02 0.71 16 38 H 0.01 0.48 7.43 -2.39 -0.02 0.46 16 39 H 0.02 0.90 6.30 -2.39 -0.02 0.89 16 40 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.68 6.15 -2.39 -0.01 1.67 16 Total: -1.00 -82.27 345.29 3.91 -78.35 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.01 Total: 7.15 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 7.18 Total: 19.59 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -6.25 Total: -127.56 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -82.27 3.91 -78.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972362761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.926 kcal (2) G-P(sol) polarization free energy of solvation -82.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds