Wall clock time and date at job start Tue Mar 31 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30449 * 125.98943 * 2 1 4 4 N 1.39934 * 108.89816 * 180.02562 * 3 2 1 5 5 H 0.96998 * 125.75546 * 179.97438 * 4 3 2 6 6 C 1.34267 * 108.49228 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.28967 * 180.02562 * 6 4 3 8 8 C 1.38038 * 107.41581 * 359.97438 * 6 4 3 9 9 C 1.47432 * 126.41470 * 179.97438 * 8 6 4 10 10 O 1.21602 * 119.99952 * 270.02027 * 9 8 6 11 11 N 1.34771 * 120.00128 * 90.02169 * 9 8 6 12 12 C 1.47433 * 125.64620 * 0.02562 * 11 9 8 13 13 C 1.54903 * 104.82939 * 204.09346 * 12 11 9 14 14 C 1.55156 * 101.58655 * 322.98957 * 13 12 11 15 15 H 1.08996 * 110.72231 * 276.96651 * 14 13 12 16 16 N 1.46503 * 110.71941 * 153.86247 * 14 13 12 17 17 C 1.46496 * 120.00433 * 301.45668 * 16 14 13 18 18 C 1.36936 * 119.99321 * 121.46066 * 16 14 13 19 19 H 1.08002 * 120.00515 * 326.62107 * 18 16 14 20 20 C 1.38814 * 119.99929 * 146.63278 * 18 16 14 21 21 N 1.31624 * 120.00287 * 154.21980 * 20 18 16 22 22 Si 1.86798 * 119.99851 * 334.21481 * 20 18 16 23 23 H 1.48504 * 109.46979 * 95.39663 * 22 20 18 24 24 H 1.48502 * 109.47528 * 215.39500 * 22 20 18 25 25 H 1.48499 * 109.47267 * 335.40118 * 22 20 18 26 26 C 1.47021 * 125.65163 * 179.71757 * 11 9 8 27 27 H 1.09008 * 109.47323 * 89.97498 * 1 2 3 28 28 H 1.09003 * 109.47472 * 209.97025 * 1 2 3 29 29 H 1.09000 * 109.47364 * 329.96976 * 1 2 3 30 30 H 1.08992 * 109.47597 * 269.97258 * 7 6 4 31 31 H 1.08999 * 109.47383 * 29.98036 * 7 6 4 32 32 H 1.09004 * 109.46898 * 149.97661 * 7 6 4 33 33 H 1.08995 * 110.36608 * 322.93084 * 12 11 9 34 34 H 1.09000 * 110.36465 * 85.14575 * 12 11 9 35 35 H 1.09007 * 111.00355 * 81.06666 * 13 12 11 36 36 H 1.09007 * 111.00699 * 204.87878 * 13 12 11 37 37 H 1.09001 * 109.46854 * 94.67890 * 17 16 14 38 38 H 1.08999 * 109.47035 * 214.68327 * 17 16 14 39 39 H 1.09003 * 109.46737 * 334.67732 * 17 16 14 40 40 H 0.96991 * 119.99846 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.88021 * 298.39368 * 26 11 9 42 42 H 1.09007 * 109.87870 * 59.55574 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 -0.0006 5 1 4.3841 1.2301 -0.0011 6 6 3.6439 -0.6980 -0.0015 7 6 4.8800 -1.5600 -0.0019 8 6 2.3372 -1.1433 -0.0009 9 6 1.8915 -2.5486 -0.0021 10 8 1.7072 -3.1271 -1.0557 11 7 1.6883 -3.1921 1.1645 12 6 1.8722 -2.6138 2.5081 13 6 2.1285 -3.8306 3.4318 14 6 1.1777 -4.8926 2.8192 15 1 0.1629 -4.7648 3.1959 16 7 1.6650 -6.2461 3.0965 17 6 2.9977 -6.6520 2.6435 18 6 0.8746 -7.1318 3.7790 19 1 0.2035 -6.7762 4.5469 20 6 0.9360 -8.4869 3.4842 21 7 0.6119 -9.3750 4.4000 22 14 1.4783 -9.0499 1.7876 23 1 2.9306 -9.3592 1.8096 24 1 0.7188 -10.2668 1.4036 25 1 1.2168 -7.9713 0.8011 26 6 1.2404 -4.5850 1.3081 27 1 -0.3634 0.0004 -1.0277 28 1 -0.3634 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 5.1780 -1.7675 -1.0295 31 1 5.6871 -1.0380 0.5122 32 1 4.6689 -2.4980 0.5117 33 1 2.7309 -1.9426 2.5179 34 1 0.9726 -2.0824 2.8187 35 1 3.1674 -4.1550 3.3713 36 1 1.8512 -3.6048 4.4615 37 1 3.7163 -6.5034 3.4495 38 1 2.9806 -7.7047 2.3614 39 1 3.2878 -6.0498 1.7824 40 1 0.6545 -10.3218 4.1937 41 1 0.2531 -4.7048 0.8621 42 1 1.9517 -5.2548 0.8245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972560356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:42 Heat of formation + Delta-G solvation = 69.994391 kcal Electronic energy + Delta-G solvation = -24112.044842 eV Core-core repulsion = 20708.790906 eV Total energy + Delta-G solvation = -3403.253936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62565 -39.45960 -37.39560 -34.92692 -33.74585 -32.14890 -31.59325 -30.15058 -28.67249 -28.02949 -27.37089 -26.22952 -24.15761 -22.43413 -21.65441 -20.31115 -19.34912 -18.87725 -17.73021 -17.08986 -16.57831 -15.95925 -15.42773 -15.12067 -15.08332 -14.23771 -13.93611 -13.63685 -13.58537 -13.40145 -13.23785 -12.79914 -12.71101 -12.65761 -12.54287 -12.34156 -12.24680 -12.04230 -11.85182 -11.73512 -10.98259 -10.93829 -10.82098 -10.57439 -10.19428 -9.98965 -9.78938 -9.57409 -9.56968 -8.75425 -8.52451 -8.36975 -6.97238 -6.06243 -3.43037 1.49309 2.27769 2.47880 2.73003 3.29475 3.32641 3.47696 3.53354 4.26206 4.42739 4.49087 4.68582 4.81951 4.89146 5.05009 5.07037 5.15479 5.22027 5.40113 5.45751 5.46946 5.53848 5.55617 5.68543 5.72309 5.74830 5.76883 5.89908 6.10866 6.27126 6.27617 6.28714 6.42897 6.52038 6.65541 6.67000 6.77479 6.93229 7.38552 7.74867 7.94275 8.28921 8.37529 8.89393 9.64634 10.02078 11.09082 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.004090 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.794644 B = 6843.488275 C = 6939.470301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.118 3.882 3 N -0.297 5.297 4 N -0.465 5.465 5 H 0.440 0.560 6 C 0.129 3.871 7 C -0.099 4.099 8 C -0.271 4.271 9 C 0.606 3.394 10 O -0.540 6.540 11 N -0.605 5.605 12 C 0.106 3.894 13 C -0.149 4.149 14 C 0.171 3.829 15 H 0.088 0.912 16 N -0.595 5.595 17 C 0.109 3.891 18 C -0.275 4.275 19 H 0.083 0.917 20 C 0.038 3.962 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.269 1.269 26 C 0.083 3.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.065 0.935 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 19.571 -5.897 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.120 5.120 4 N -0.171 5.171 5 H 0.285 0.715 6 C -0.003 4.003 7 C -0.158 4.158 8 C -0.286 4.286 9 C 0.392 3.608 10 O -0.417 6.417 11 N -0.338 5.338 12 C -0.017 4.017 13 C -0.189 4.189 14 C 0.062 3.938 15 H 0.107 0.893 16 N -0.317 5.317 17 C -0.035 4.035 18 C -0.403 4.403 19 H 0.101 0.899 20 C -0.163 4.163 21 N -0.534 5.534 22 Si 0.708 3.292 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.194 1.194 26 C -0.042 4.042 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.734 20.332 -6.458 22.371 hybrid contribution 0.814 -0.967 -0.997 1.610 sum 7.548 19.365 -7.455 22.081 Atomic orbital electron populations 1.20269 0.86087 1.03698 1.03622 1.22316 0.96961 0.88799 0.96877 1.77066 0.86144 1.22127 1.26657 1.45933 1.07560 1.04658 1.58976 0.71536 1.21353 0.96170 0.84956 0.97841 1.20576 0.92109 0.98867 1.04213 1.19862 0.92109 0.94280 1.22321 1.16944 0.77145 0.84217 0.82446 1.90784 1.52141 1.67958 1.30810 1.48516 1.65975 1.13883 1.05470 1.22264 1.00776 0.96639 0.82023 1.23309 1.01824 0.95014 0.98785 1.21516 0.97064 0.85495 0.89741 0.89347 1.44075 1.12628 1.09718 1.65253 1.21319 0.87048 0.98459 0.96686 1.18789 1.21405 0.87078 1.13044 0.89916 1.25367 0.97890 0.95979 0.97073 1.69902 1.50025 1.01325 1.32148 0.86984 0.76854 0.77774 0.87606 1.21442 1.22952 1.19399 1.22899 0.99899 0.80692 1.00672 0.89935 0.90186 0.90305 0.89351 0.90355 0.89166 0.91571 0.91558 0.90822 0.90085 0.96101 0.94171 0.94611 0.92586 0.91649 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.28 36.00 0.37 -0.44 16 2 C 0.12 1.50 7.26 -82.02 -0.60 0.91 16 3 N -0.30 -3.64 12.63 33.89 0.43 -3.21 16 4 N -0.46 -4.46 7.29 33.86 0.25 -4.22 16 5 H 0.44 2.58 8.96 -182.72 -1.64 0.95 16 6 C 0.13 1.40 7.29 -81.60 -0.60 0.80 16 7 C -0.10 -0.80 10.25 36.00 0.37 -0.43 16 8 C -0.27 -3.70 4.77 -105.06 -0.50 -4.20 16 9 C 0.61 9.92 7.01 -12.52 -0.09 9.83 16 10 O -0.54 -10.95 17.43 5.28 0.09 -10.86 16 11 N -0.60 -9.36 3.33 -171.78 -0.57 -9.93 16 12 C 0.11 1.35 6.68 -2.53 -0.02 1.33 16 13 C -0.15 -2.17 6.65 -24.59 -0.16 -2.33 16 14 C 0.17 3.13 3.43 -66.09 -0.23 2.90 16 15 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 16 N -0.60 -13.43 2.56 -171.38 -0.44 -13.87 16 17 C 0.11 2.31 8.42 59.84 0.50 2.81 16 18 C -0.28 -7.38 9.87 -15.06 -0.15 -7.53 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 20 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 21 N -0.89 -26.66 13.97 55.49 0.78 -25.89 16 22 Si 0.88 22.06 25.10 -169.99 -4.27 17.79 16 23 H -0.29 -6.99 6.63 56.52 0.37 -6.62 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.08 1.49 6.41 -3.06 -0.02 1.47 16 27 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.85 7.96 -51.93 -0.41 0.44 16 33 H 0.07 0.75 7.69 -51.93 -0.40 0.36 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.10 7.28 -51.92 -0.38 0.72 16 36 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.04 0.94 2.80 -51.93 -0.15 0.79 16 39 H 0.04 0.67 6.28 -51.93 -0.33 0.35 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.39 6.12 -51.93 -0.32 1.08 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -33.89 341.32 -7.21 -41.10 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.41 Total: -2.16 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.21 Total: 6.10 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.44 Total: -57.11 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.27 Total: 17.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.89 -7.21 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972560356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.094 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds