Wall clock time and date at job start Tue Mar 31 2020 04:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34257 * 125.75376 * 2 1 4 4 C 1.38041 * 107.41965 * 180.14518 * 3 2 1 5 5 C 1.47427 * 126.42033 * 179.87074 * 4 3 2 6 6 O 1.21605 * 119.99852 * 359.71615 * 5 4 3 7 7 N 1.34770 * 120.00203 * 179.71486 * 5 4 3 8 8 C 1.46496 * 120.00229 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.88567 * 31.11827 * 8 7 5 10 10 C 1.54910 * 111.03806 * 267.21591 * 8 7 5 11 11 N 1.47425 * 104.83231 * 278.91717 * 10 8 7 12 12 C 1.36933 * 125.64542 * 156.13438 * 11 10 8 13 13 H 1.08005 * 119.99541 * 179.69129 * 12 11 10 14 14 C 1.38813 * 120.00564 * 359.69503 * 12 11 10 15 15 N 1.31616 * 119.99514 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00305 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47103 * 60.00082 * 16 14 12 18 18 H 1.48502 * 109.47327 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47083 * 299.99999 * 16 14 12 20 20 C 1.47026 * 108.70074 * 335.87083 * 11 10 8 21 21 C 1.54316 * 107.27365 * 1.05989 * 20 11 10 22 22 C 1.52996 * 110.72327 * 140.55544 * 21 20 11 23 23 C 1.53005 * 110.72095 * 263.65326 * 21 20 11 24 24 C 1.41293 * 107.16440 * 359.61263 * 4 3 2 25 25 N 1.30442 * 108.02658 * 0.23898 * 24 4 3 26 26 H 1.08997 * 109.47265 * 270.26350 * 1 2 3 27 27 H 1.09003 * 109.46935 * 30.26165 * 1 2 3 28 28 H 1.08999 * 109.47260 * 150.26271 * 1 2 3 29 29 H 1.08005 * 126.29476 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00436 * 0.02562 * 7 5 4 31 31 H 1.09001 * 110.36852 * 160.08016 * 10 8 7 32 32 H 1.08998 * 110.36449 * 37.75664 * 10 8 7 33 33 H 0.97002 * 119.99999 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.87531 * 120.47707 * 20 11 10 35 35 H 1.08996 * 109.88343 * 241.48426 * 20 11 10 36 36 H 1.09003 * 109.47103 * 61.45020 * 22 21 20 37 37 H 1.09000 * 109.47385 * 181.45314 * 22 21 20 38 38 H 1.09004 * 109.47258 * 301.45425 * 22 21 20 39 39 H 1.08998 * 109.46762 * 58.54207 * 23 21 20 40 40 H 1.08993 * 109.47001 * 178.54628 * 23 21 20 41 41 H 1.09008 * 109.46751 * 298.54769 * 23 21 20 42 42 H 1.08005 * 125.98486 * 180.27508 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6553 -0.0033 5 6 4.7639 1.5061 -0.0072 6 8 4.6526 2.7170 -0.0129 7 7 5.9877 0.9418 -0.0044 8 6 7.1841 1.7872 -0.0077 9 1 6.9982 2.7258 0.5145 10 6 7.6793 2.0446 -1.4528 11 7 8.4452 0.8366 -1.8101 12 6 8.6816 0.3888 -3.0823 13 1 9.2613 -0.5088 -3.2398 14 6 8.1762 1.0884 -4.1696 15 7 7.4694 2.1819 -3.9775 16 14 8.4993 0.4778 -5.9051 17 1 7.9350 -0.8868 -6.0628 18 1 7.8560 1.3946 -6.8802 19 1 9.9631 0.4397 -6.1520 20 6 8.9187 0.1961 -0.5743 21 6 8.3958 1.0388 0.6080 22 6 7.9466 0.1365 1.7591 23 6 9.4632 2.0270 1.0823 24 6 3.5310 -0.7573 0.0038 25 7 2.2827 -1.1356 0.0057 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8877 -0.5179 28 1 -0.3634 -0.8923 -0.5097 29 1 1.9166 2.1170 -0.0004 30 1 6.0765 -0.0241 -0.0002 31 1 8.3224 2.9241 -1.4826 32 1 6.8322 2.1699 -2.1273 33 1 7.1166 2.6710 -4.7373 34 1 8.5257 -0.8186 -0.5088 35 1 10.0083 0.1729 -0.5627 36 1 8.7959 -0.4451 2.1175 37 1 7.5578 0.7504 2.5716 38 1 7.1661 -0.5386 1.4083 39 1 9.7474 2.6790 0.2563 40 1 9.0644 2.6283 1.8992 41 1 10.3385 1.4776 1.4292 42 1 4.3918 -1.4096 0.0076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972800093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:53 Heat of formation + Delta-G solvation = 70.745376 kcal Electronic energy + Delta-G solvation = -24169.232793 eV Core-core repulsion = 20766.011422 eV Total energy + Delta-G solvation = -3403.221371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24860 -39.34425 -37.54400 -33.79042 -33.49481 -32.73216 -30.64952 -30.25328 -28.23993 -27.20565 -26.43458 -25.54206 -23.57752 -22.30358 -21.00330 -20.23243 -19.55307 -18.66813 -17.59157 -16.65667 -15.74923 -15.66139 -15.59332 -14.59118 -14.51109 -14.10396 -13.85691 -13.74466 -13.56849 -13.14965 -12.98391 -12.76810 -12.64792 -12.51820 -12.09078 -11.85288 -11.68282 -11.23346 -11.10026 -11.00293 -10.92975 -10.72149 -10.33166 -10.15751 -9.88675 -9.73808 -9.62100 -9.57556 -9.33264 -8.65058 -8.60917 -8.16793 -6.74875 -5.57261 -3.00224 1.65817 2.32784 2.34105 3.43703 3.47890 3.49671 3.79769 3.96942 4.42977 4.53633 4.80183 4.90145 4.97028 5.08156 5.16066 5.31688 5.35722 5.38138 5.51257 5.58139 5.69300 5.85263 5.88911 5.95018 6.10995 6.17622 6.26126 6.34539 6.43879 6.52052 6.55025 6.69260 6.76790 6.80463 6.86138 7.10229 7.54314 7.58599 7.68014 7.95745 8.20217 8.46062 8.88853 9.27908 9.89640 10.54073 11.45127 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.005527 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.632412 B = 5065.102947 C = 6407.468631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.121 3.879 4 C -0.280 4.280 5 C 0.593 3.407 6 O -0.556 6.556 7 N -0.696 5.696 8 C 0.126 3.874 9 H 0.088 0.912 10 C 0.146 3.854 11 N -0.601 5.601 12 C -0.225 4.225 13 H 0.075 0.925 14 C -0.008 4.008 15 N -0.917 5.917 16 Si 0.911 3.089 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.143 3.857 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.128 4.128 24 C 0.084 3.916 25 N -0.303 5.303 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.187 0.813 30 H 0.395 0.605 31 H 0.019 0.981 32 H 0.113 0.887 33 H 0.252 0.748 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -3.866 12.079 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 C -0.030 4.030 4 C -0.295 4.295 5 C 0.380 3.620 6 O -0.436 6.436 7 N -0.345 5.345 8 C 0.020 3.980 9 H 0.106 0.894 10 C 0.020 3.980 11 N -0.327 5.327 12 C -0.353 4.353 13 H 0.093 0.907 14 C -0.204 4.204 15 N -0.565 5.565 16 Si 0.742 3.258 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C 0.017 3.983 21 C -0.089 4.089 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.104 4.104 25 N -0.123 5.123 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.204 0.796 30 H 0.229 0.771 31 H 0.037 0.963 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.595 -3.947 11.842 16.373 hybrid contribution 0.824 -0.114 -1.061 1.348 sum -9.771 -4.061 10.781 15.106 Atomic orbital electron populations 1.21928 0.73838 1.04855 1.03552 1.48355 1.07021 1.03951 1.55622 1.22933 0.90191 0.93570 0.96278 1.20409 0.93800 0.93537 1.21734 1.17100 0.82201 0.86828 0.75843 1.90738 1.86881 1.14146 1.51835 1.45529 1.04933 1.09987 1.74052 1.22477 0.82527 0.92824 1.00130 0.89395 1.22318 0.97397 0.87908 0.90359 1.44455 1.61208 1.26770 1.00247 1.18976 1.28015 1.07025 0.81290 0.90674 1.24772 1.00444 0.97389 0.97812 1.69800 1.39816 1.18068 1.28819 0.86209 0.77598 0.77663 0.84329 1.21284 1.21669 1.21285 1.21400 0.96465 0.94307 0.86107 1.21845 0.95585 0.96364 0.95135 1.21710 1.00573 0.99025 0.97457 1.21682 0.97386 0.98598 1.00886 1.24071 0.95174 0.94177 0.96949 1.77129 1.01994 1.07813 1.25408 0.90500 0.89153 0.89042 0.79600 0.77053 0.96285 0.86956 0.93708 0.96127 0.95955 0.92858 0.92877 0.92895 0.91808 0.93123 0.92758 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.44 59.85 0.68 1.37 16 2 N -0.37 -4.48 3.98 -67.60 -0.27 -4.74 16 3 C 0.12 1.62 11.30 -16.56 -0.19 1.43 16 4 C -0.28 -4.43 6.13 -105.07 -0.64 -5.08 16 5 C 0.59 11.20 7.81 -12.52 -0.10 11.10 16 6 O -0.56 -12.26 16.54 5.27 0.09 -12.17 16 7 N -0.70 -12.56 4.51 -52.80 -0.24 -12.80 16 8 C 0.13 2.46 2.67 -65.78 -0.18 2.29 16 9 H 0.09 1.76 7.44 -51.93 -0.39 1.38 16 10 C 0.15 3.61 5.27 -2.53 -0.01 3.59 16 11 N -0.60 -15.06 3.39 -170.07 -0.58 -15.63 16 12 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 13 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 14 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 15 N -0.92 -27.36 10.09 55.49 0.56 -26.80 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 C 0.14 2.88 6.41 -3.07 -0.02 2.86 16 21 C -0.09 -1.48 0.80 -152.68 -0.12 -1.60 16 22 C -0.13 -1.74 8.15 37.16 0.30 -1.44 16 23 C -0.13 -1.96 8.44 37.16 0.31 -1.64 16 24 C 0.08 1.20 11.50 -16.98 -0.20 1.00 16 25 N -0.30 -4.33 12.50 30.86 0.39 -3.95 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.19 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.39 6.41 6.08 -40.82 -0.25 6.16 16 31 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 32 H 0.11 3.25 5.87 -51.93 -0.30 2.94 16 33 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.02 0.40 7.82 -51.93 -0.41 0.00 16 35 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 39 H 0.06 1.10 7.47 -51.93 -0.39 0.72 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.19 2.21 7.50 -52.48 -0.39 1.81 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -34.80 342.85 -6.50 -41.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.19 Total: 5.10 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.40 Total: 7.17 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.14 Total: -63.93 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.80 -6.50 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972800093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.048 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds