Wall clock time and date at job start Tue Mar 31 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34264 * 125.75861 * 2 1 4 4 C 1.38044 * 107.41740 * 180.26291 * 3 2 1 5 5 C 1.47425 * 126.41008 * 179.71784 * 4 3 2 6 6 O 1.21599 * 120.00564 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99582 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99808 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.88342 * 328.88185 * 8 7 5 10 10 C 1.54912 * 111.00315 * 92.80564 * 8 7 5 11 11 N 1.47423 * 104.83261 * 81.06222 * 10 8 7 12 12 C 1.36937 * 125.64914 * 204.08091 * 11 10 8 13 13 H 1.08004 * 119.99704 * 180.02562 * 12 11 10 14 14 C 1.38806 * 119.99931 * 0.05983 * 12 11 10 15 15 N 1.31614 * 120.00127 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47145 * 59.99045 * 16 14 12 18 18 H 1.48495 * 109.47478 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46474 * 299.99601 * 16 14 12 20 20 C 1.47026 * 108.69971 * 24.12779 * 11 10 8 21 21 C 1.54314 * 107.27527 * 358.94089 * 20 11 10 22 22 C 1.53001 * 110.72268 * 219.44325 * 21 20 11 23 23 C 1.53002 * 110.72127 * 96.16634 * 21 20 11 24 24 C 1.41294 * 107.17157 * 359.58675 * 4 3 2 25 25 N 1.30448 * 108.01962 * 0.41789 * 24 4 3 26 26 H 1.09001 * 109.47217 * 89.99796 * 1 2 3 27 27 H 1.08997 * 109.47690 * 209.99850 * 1 2 3 28 28 H 1.09004 * 109.47021 * 330.00503 * 1 2 3 29 29 H 1.08002 * 126.28609 * 359.97438 * 3 2 1 30 30 H 0.96996 * 120.00065 * 0.02562 * 7 5 4 31 31 H 1.08993 * 110.36582 * 199.90242 * 10 8 7 32 32 H 1.08999 * 110.36594 * 322.22501 * 10 8 7 33 33 H 0.96998 * 120.00097 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.87948 * 239.51522 * 20 11 10 35 35 H 1.09006 * 109.87906 * 118.35934 * 20 11 10 36 36 H 1.08993 * 109.47486 * 173.52100 * 22 21 20 37 37 H 1.09006 * 109.46924 * 293.52173 * 22 21 20 38 38 H 1.08997 * 109.46775 * 53.51794 * 22 21 20 39 39 H 1.08998 * 109.47271 * 306.47966 * 23 21 20 40 40 H 1.09006 * 109.46923 * 66.48014 * 23 21 20 41 41 H 1.09004 * 109.46958 * 186.47787 * 23 21 20 42 42 H 1.07995 * 125.98673 * 180.15835 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0060 5 6 4.7637 1.5060 -0.0141 6 8 4.6526 2.7169 -0.0154 7 7 5.9877 0.9416 -0.0189 8 6 7.1841 1.7871 -0.0263 9 1 6.9958 2.7223 -0.5535 10 6 7.6854 2.0525 1.4152 11 7 8.4525 0.8464 1.7761 12 6 8.6905 0.4035 3.0498 13 1 9.2671 -0.4957 3.2099 14 6 8.1903 1.1096 4.1351 15 7 7.4876 2.2053 3.9400 16 14 8.5156 0.5058 5.8726 17 1 9.9800 0.4636 6.1160 18 1 7.8790 1.4298 6.8452 19 1 7.9470 -0.8561 6.0378 20 6 8.9205 0.1986 0.5420 21 6 8.3929 1.0347 -0.6428 22 6 7.9386 0.1260 -1.7869 23 6 9.4571 2.0229 -1.1244 24 6 3.5310 -0.7575 0.0000 25 7 2.2825 -1.1356 0.0000 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.9165 2.1170 -0.0004 30 1 6.0763 -0.0243 -0.0174 31 1 8.3288 2.9320 1.4372 32 1 6.8413 2.1820 2.0925 33 1 7.1383 2.6989 4.6984 34 1 8.5271 -0.8163 0.4840 35 1 10.0102 0.1775 0.5248 36 1 7.4655 0.7276 -2.5628 37 1 8.8022 -0.3917 -2.2045 38 1 7.2247 -0.6054 -1.4082 39 1 9.8064 2.6198 -0.2820 40 1 10.2955 1.4737 -1.5530 41 1 9.0276 2.6791 -1.8814 42 1 4.3917 -1.4097 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972800094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:56 Heat of formation + Delta-G solvation = 45.847470 kcal Electronic energy + Delta-G solvation = -24171.777065 eV Core-core repulsion = 20767.476040 eV Total energy + Delta-G solvation = -3404.301025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32042 -40.86483 -39.09813 -35.61757 -34.67892 -34.01028 -32.56313 -31.40144 -29.80915 -28.24206 -27.66884 -27.27868 -25.18308 -23.68843 -22.19982 -21.77329 -20.99656 -20.07748 -18.80449 -18.65868 -17.29466 -16.88088 -16.61494 -16.41694 -15.66154 -15.61661 -15.42378 -15.26674 -14.88775 -14.61207 -14.10742 -13.87184 -13.68524 -13.60353 -13.46439 -13.43640 -13.00333 -12.96407 -12.78063 -12.57817 -12.51553 -12.12695 -12.10970 -11.73991 -11.70527 -11.39377 -11.30455 -10.85820 -10.69543 -10.55910 -9.96954 -9.57619 -8.79850 -7.71802 -5.16709 0.56958 1.16912 1.45613 1.47461 1.48778 1.55076 2.40417 2.51455 2.60016 3.37349 3.53272 3.64474 3.74707 3.83995 4.03432 4.13377 4.16181 4.18021 4.44051 4.47711 4.58143 4.58642 4.69196 4.70738 4.85777 4.89172 4.93922 4.97302 5.09807 5.16051 5.25654 5.36829 5.38172 5.39366 5.52243 5.58545 5.78382 5.89386 5.89541 6.35910 6.49448 6.77509 7.13349 7.44073 7.83479 8.47380 9.28444 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.005532 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.741319 B = 5060.366222 C = 6403.120785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.131 3.869 4 C -0.314 4.314 5 C 0.590 3.410 6 O -0.598 6.598 7 N -0.690 5.690 8 C 0.138 3.862 9 H 0.081 0.919 10 C 0.155 3.845 11 N -0.617 5.617 12 C -0.232 4.232 13 H 0.084 0.916 14 C -0.068 4.068 15 N -0.949 5.949 16 Si 0.975 3.025 17 H -0.278 1.278 18 H -0.299 1.299 19 H -0.276 1.276 20 C 0.138 3.862 21 C -0.074 4.074 22 C -0.123 4.123 23 C -0.126 4.126 24 C 0.084 3.916 25 N -0.321 5.321 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.207 0.793 30 H 0.405 0.595 31 H -0.015 1.015 32 H 0.068 0.932 33 H 0.242 0.758 34 H 0.036 0.964 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -5.881 -13.535 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.022 4.022 4 C -0.329 4.329 5 C 0.379 3.621 6 O -0.480 6.480 7 N -0.339 5.339 8 C 0.031 3.969 9 H 0.099 0.901 10 C 0.028 3.972 11 N -0.343 5.343 12 C -0.362 4.362 13 H 0.102 0.898 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.804 3.196 17 H -0.204 1.204 18 H -0.226 1.226 19 H -0.202 1.202 20 C 0.013 3.987 21 C -0.076 4.076 22 C -0.180 4.180 23 C -0.183 4.183 24 C -0.103 4.103 25 N -0.142 5.142 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.224 0.776 30 H 0.241 0.759 31 H 0.003 0.997 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.307 -6.035 -13.336 18.496 hybrid contribution 0.959 0.496 1.529 1.872 sum -10.348 -5.539 -11.807 16.648 Atomic orbital electron populations 1.22403 0.70788 1.06523 1.05517 1.48771 1.08627 1.02939 1.53616 1.23263 0.89719 0.94746 0.94517 1.20285 0.93496 0.94076 1.25044 1.17580 0.83122 0.86669 0.74694 1.90701 1.87490 1.15987 1.53854 1.45416 1.04389 1.10289 1.73758 1.22169 0.84247 0.93714 0.96752 0.90064 1.21951 0.95145 0.87152 0.92922 1.44677 1.61586 1.26916 1.01147 1.19406 1.27295 1.06813 0.82645 0.89824 1.25593 1.00970 0.97788 1.01637 1.70113 1.41550 1.19159 1.29052 0.85192 0.77641 0.77125 0.79622 1.20370 1.22599 1.20210 1.21646 0.96615 0.95101 0.85289 1.21833 0.94149 0.96392 0.95176 1.21673 1.01764 0.98510 0.96102 1.21687 0.97905 0.98397 1.00360 1.24319 0.95893 0.93657 0.96391 1.77091 1.02147 1.08974 1.25956 0.88354 0.88344 0.86603 0.77622 0.75897 0.99708 0.91409 0.94823 0.94622 0.95707 0.91746 0.90474 0.92249 0.94779 0.90223 0.91291 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 11.44 127.77 1.46 2.40 16 2 N -0.36 -7.98 3.98 -367.80 -1.46 -9.44 16 3 C 0.13 3.32 11.30 84.27 0.95 4.27 16 4 C -0.31 -9.80 6.13 -20.15 -0.12 -9.92 16 5 C 0.59 22.60 7.81 86.66 0.68 23.28 16 6 O -0.60 -27.19 16.54 -4.03 -0.07 -27.25 16 7 N -0.69 -24.93 4.54 -439.20 -1.99 -26.92 16 8 C 0.14 5.46 2.67 46.38 0.12 5.58 16 9 H 0.08 3.35 7.44 -2.39 -0.02 3.33 16 10 C 0.15 8.02 5.27 86.86 0.46 8.48 16 11 N -0.62 -31.49 3.39 -692.00 -2.35 -33.84 16 12 C -0.23 -13.04 10.27 84.03 0.86 -12.18 16 13 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 14 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 15 N -0.95 -59.25 10.09 21.65 0.22 -59.04 16 16 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C 0.14 5.39 6.41 86.72 0.56 5.95 16 21 C -0.07 -2.38 0.80 -50.99 -0.04 -2.42 16 22 C -0.12 -2.87 8.07 71.98 0.58 -2.29 16 23 C -0.13 -3.67 8.41 71.98 0.61 -3.06 16 24 C 0.08 2.32 11.50 85.65 0.99 3.30 16 25 N -0.32 -8.64 12.50 -56.28 -0.70 -9.35 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.40 12.79 6.13 -92.71 -0.57 12.22 16 31 H -0.01 -0.85 7.80 -2.39 -0.02 -0.87 16 32 H 0.07 4.16 5.87 -2.39 -0.01 4.15 16 33 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.04 1.31 7.77 -2.39 -0.02 1.29 16 35 H 0.02 0.97 7.84 -2.38 -0.02 0.95 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.06 1.32 6.48 -2.39 -0.02 1.30 16 39 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.21 4.53 7.50 -2.91 -0.02 4.51 16 Total: -1.00 -79.13 343.09 3.69 -75.44 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.46 Total: 21.59 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 7.56 Total: 19.94 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -6.29 Total: -138.58 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.07 Total: -27.25 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.13 3.69 -75.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972800094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.285 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds