Wall clock time and date at job start Tue Mar 31 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35363 * 127.24763 * 2 1 4 4 N 1.35032 * 107.22732 * 179.88759 * 3 2 1 5 5 H 0.97001 * 124.88701 * 180.15742 * 4 3 2 6 6 N 1.28472 * 110.23326 * 0.39863 * 4 3 2 7 7 C 1.31811 * 110.06855 * 359.75903 * 6 4 3 8 8 C 1.47712 * 126.51682 * 180.02562 * 7 6 4 9 9 O 1.21570 * 120.00235 * 179.97438 * 8 7 6 10 10 N 1.34774 * 119.99904 * 359.95085 * 8 7 6 11 11 C 1.46503 * 120.00235 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.88327 * 34.29575 * 11 10 8 13 13 C 1.54908 * 111.00087 * 270.42019 * 11 10 8 14 14 N 1.47422 * 104.82988 * 278.92855 * 13 11 10 15 15 C 1.36942 * 125.64947 * 155.83596 * 14 13 11 16 16 H 1.07994 * 120.00023 * 180.02562 * 15 14 13 17 17 C 1.38820 * 119.99781 * 0.02855 * 15 14 13 18 18 N 1.31613 * 119.99749 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47266 * 90.00010 * 19 17 15 21 21 H 1.48499 * 109.46925 * 210.00234 * 19 17 15 22 22 H 1.48496 * 109.47116 * 329.99654 * 19 17 15 23 23 C 1.47017 * 108.70657 * 335.87364 * 14 13 11 24 24 C 1.54434 * 107.27941 * 1.06005 * 23 14 13 25 25 C 1.53000 * 110.72204 * 263.84398 * 24 23 14 26 26 C 1.53005 * 110.76144 * 140.54200 * 24 23 14 27 27 H 1.09001 * 109.46953 * 269.67594 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.67192 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.67823 * 1 2 3 30 30 H 1.07998 * 126.38453 * 359.97438 * 3 2 1 31 31 H 0.97000 * 119.99953 * 359.97438 * 10 8 7 32 32 H 1.09002 * 110.37261 * 37.77069 * 13 11 10 33 33 H 1.08997 * 110.36470 * 160.09720 * 13 11 10 34 34 H 0.97000 * 119.99825 * 180.02562 * 18 17 15 35 35 H 1.09009 * 109.88578 * 120.47154 * 23 14 13 36 36 H 1.08995 * 109.88777 * 241.48404 * 23 14 13 37 37 H 1.08998 * 109.46690 * 173.46107 * 25 24 23 38 38 H 1.08991 * 109.47269 * 293.46780 * 25 24 23 39 39 H 1.09000 * 109.46985 * 53.46878 * 25 24 23 40 40 H 1.09004 * 109.46734 * 306.50975 * 26 24 23 41 41 H 1.08991 * 109.47124 * 66.51070 * 26 24 23 42 42 H 1.08999 * 109.47001 * 186.51573 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 0.0025 5 1 4.3888 1.1729 0.0053 6 7 3.5999 -0.6694 -0.0043 7 6 2.3635 -1.1264 -0.0064 8 6 1.9505 -2.5446 -0.0134 9 8 0.7698 -2.8339 -0.0142 10 7 2.8828 -3.5178 -0.0192 11 6 2.4733 -4.9245 -0.0267 12 1 1.5566 -5.0592 -0.6007 13 6 2.3088 -5.4624 1.4166 14 7 3.6777 -5.7890 1.8559 15 6 4.1062 -5.8485 3.1552 16 1 5.1340 -6.0974 3.3739 17 6 3.2192 -5.5888 4.1910 18 7 1.9667 -5.2851 3.9243 19 14 3.8039 -5.6692 5.9634 20 1 4.2976 -4.3330 6.3829 21 1 2.6758 -6.0773 6.8387 22 1 4.9029 -6.6612 6.0776 23 6 4.5069 -6.0395 0.6680 24 6 3.6085 -5.8314 -0.5708 25 6 3.0461 -7.1668 -1.0621 26 6 4.3791 -5.1233 -1.6869 27 1 -0.3633 -0.0058 1.0277 28 1 -0.3634 0.8929 -0.5087 29 1 -0.3633 -0.8871 -0.5188 30 1 2.0220 2.1137 -0.0004 31 1 3.8249 -3.2870 -0.0193 32 1 1.8765 -4.6962 2.0602 33 1 1.6861 -6.3570 1.4194 34 1 1.3471 -5.1033 4.6481 35 1 5.3407 -5.3377 0.6431 36 1 4.8838 -7.0620 0.6878 37 1 2.3265 -6.9861 -1.8606 38 1 3.8593 -7.7868 -1.4392 39 1 2.5517 -7.6786 -0.2365 40 1 4.8182 -4.2042 -1.2987 41 1 5.1702 -5.7773 -2.0536 42 1 3.6979 -4.8839 -2.5034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974564418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:28 Heat of formation + Delta-G solvation = 62.167085 kcal Electronic energy + Delta-G solvation = -24438.115556 eV Core-core repulsion = 21034.522202 eV Total energy + Delta-G solvation = -3403.593353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53304 -39.41913 -37.62898 -33.76155 -33.07271 -32.80076 -31.08269 -30.61559 -28.06917 -27.05041 -26.68347 -25.53785 -24.15264 -22.77874 -20.68059 -20.12121 -19.50754 -18.55936 -18.05681 -16.75025 -16.52494 -15.71252 -15.58984 -14.57637 -14.13155 -13.94403 -13.74162 -13.58639 -13.32001 -13.08722 -12.99257 -12.73258 -12.56226 -12.10433 -11.95334 -11.84129 -11.66092 -11.21991 -11.09370 -10.94097 -10.73075 -10.66889 -10.33032 -10.14764 -9.86669 -9.73014 -9.61882 -9.45018 -9.28900 -8.75461 -8.60703 -8.21183 -6.73013 -5.55669 -2.98297 1.81953 2.22922 2.93396 3.43967 3.48506 3.51065 3.72322 3.92277 4.54708 4.68050 4.84559 5.07020 5.31484 5.33329 5.37518 5.47399 5.59622 5.63838 5.71080 5.88842 5.95458 5.96748 6.07351 6.12135 6.18230 6.27055 6.29310 6.36578 6.48087 6.56534 6.64585 6.69976 6.78067 6.87112 7.01611 7.10607 7.57575 7.69598 7.86971 7.97509 8.23426 8.47463 8.81991 9.29510 9.91151 10.55671 11.46910 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.006005 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.903456 B = 4661.478910 C = 5835.558032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.146 4.146 3 C -0.028 4.028 4 N -0.386 5.386 5 H 0.444 0.556 6 N -0.259 5.259 7 C -0.001 4.001 8 C 0.601 3.399 9 O -0.535 6.535 10 N -0.687 5.687 11 C 0.124 3.876 12 H 0.088 0.912 13 C 0.146 3.854 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.143 3.857 24 C -0.087 4.087 25 C -0.127 4.127 26 C -0.131 4.131 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.021 0.979 34 H 0.252 0.748 35 H 0.021 0.979 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 10.645 -12.135 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C -0.172 4.172 4 N -0.100 5.100 5 H 0.288 0.712 6 N -0.095 5.095 7 C -0.163 4.163 8 C 0.384 3.616 9 O -0.410 6.410 10 N -0.337 5.337 11 C 0.018 3.982 12 H 0.106 0.894 13 C 0.021 3.979 14 N -0.326 5.326 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.564 5.564 19 Si 0.742 3.258 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.017 3.983 24 C -0.088 4.088 25 C -0.185 4.185 26 C -0.189 4.189 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.198 0.802 31 H 0.237 0.763 32 H 0.131 0.869 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.336 10.039 -11.908 15.749 hybrid contribution 0.548 0.749 1.111 1.447 sum 2.883 10.788 -10.797 15.533 Atomic orbital electron populations 1.20172 0.88144 1.02759 1.02569 1.20413 0.97628 0.90496 1.07110 1.22630 0.84329 1.00357 1.09858 1.43183 1.08382 1.04517 1.53900 0.71222 1.73563 1.23385 0.93593 1.18930 1.22080 0.89205 0.95611 1.09394 1.16770 0.85637 0.82355 0.76821 1.90744 1.16826 1.82521 1.50911 1.45648 1.09509 1.05792 1.72744 1.22556 0.96199 0.78807 1.00618 0.89427 1.22313 0.86715 0.99395 0.89508 1.44445 1.06190 1.81552 1.00455 1.19018 0.94978 1.40272 0.80868 0.90644 1.24784 0.95723 1.02169 0.97880 1.69805 1.03084 1.53606 1.29923 0.86124 0.77312 0.77527 0.84823 1.21821 1.21700 1.20812 1.21423 0.93011 0.97578 0.86263 1.21857 0.96120 0.95541 0.95322 1.21678 1.00350 0.95583 1.00901 1.21716 0.99563 0.99896 0.97691 0.91357 0.92347 0.89768 0.80197 0.76261 0.86917 0.96112 0.93755 0.96132 0.95886 0.93059 0.92758 0.91733 0.92797 0.92803 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.93 36.01 0.36 -0.68 16 2 C -0.15 -2.13 6.25 -104.40 -0.65 -2.78 16 3 C -0.03 -0.30 11.97 -17.17 -0.21 -0.50 16 4 N -0.39 -4.22 6.83 30.47 0.21 -4.01 16 5 H 0.44 2.92 8.96 -190.44 -1.71 1.22 16 6 N -0.26 -3.97 11.92 33.42 0.40 -3.57 16 7 C 0.00 -0.02 7.13 -82.76 -0.59 -0.61 16 8 C 0.60 12.10 7.82 -12.39 -0.10 12.00 16 9 O -0.53 -11.94 14.81 5.30 0.08 -11.86 16 10 N -0.69 -13.37 4.62 -52.71 -0.24 -13.62 16 11 C 0.12 2.50 2.61 -65.78 -0.17 2.33 16 12 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 13 C 0.15 3.70 5.27 -2.53 -0.01 3.68 16 14 N -0.60 -15.44 3.39 -170.01 -0.58 -16.02 16 15 C -0.22 -6.31 10.27 -15.05 -0.15 -6.46 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -27.68 10.09 55.49 0.56 -27.12 16 19 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.14 2.98 6.41 -3.01 -0.02 2.96 16 24 C -0.09 -1.52 0.81 -152.62 -0.12 -1.64 16 25 C -0.13 -1.99 8.41 37.16 0.31 -1.68 16 26 C -0.13 -1.87 8.08 37.16 0.30 -1.57 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.28 6.72 -51.93 -0.35 0.93 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.40 7.47 6.75 -40.82 -0.28 7.20 16 32 H 0.11 3.32 5.87 -51.93 -0.30 3.02 16 33 H 0.02 0.56 7.80 -51.93 -0.41 0.16 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.02 0.43 7.77 -51.92 -0.40 0.02 16 36 H 0.02 0.48 7.85 -51.93 -0.41 0.07 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.13 7.57 -51.93 -0.39 0.74 16 40 H 0.05 0.77 6.42 -51.93 -0.33 0.44 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -34.37 339.28 -8.11 -42.48 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.48 Total: 6.26 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.15 Total: 4.68 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.35 Total: -64.34 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.37 -8.11 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974564418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.648 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds