Wall clock time and date at job start Tue Mar 31 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30451 * 125.98879 * 2 1 4 4 N 1.39942 * 108.89551 * 180.26645 * 3 2 1 5 5 H 0.96994 * 125.75185 * 179.73358 * 4 3 2 6 6 C 1.34260 * 108.49140 * 359.74786 * 4 3 2 7 7 C 1.38039 * 107.41870 * 0.02562 * 6 4 3 8 8 C 1.47430 * 126.41506 * 179.97438 * 7 6 4 9 9 O 1.21603 * 120.00081 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99963 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27989 * 10 8 7 12 12 H 1.08998 * 110.88662 * 325.42274 * 11 10 8 13 13 C 1.54910 * 111.00601 * 89.30493 * 11 10 8 14 14 N 1.47523 * 104.78514 * 81.08510 * 13 11 10 15 15 C 1.36932 * 125.63845 * 204.08529 * 14 13 11 16 16 H 1.08004 * 120.00123 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99896 * 0.03890 * 15 14 13 18 18 N 1.31621 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47436 * 120.00230 * 19 17 15 22 22 H 1.48502 * 109.47083 * 240.00184 * 19 17 15 23 23 C 1.47027 * 108.71307 * 24.11950 * 14 13 11 24 24 C 1.54322 * 107.27236 * 358.94409 * 23 14 13 25 25 C 1.52995 * 110.71944 * 219.44505 * 24 23 14 26 26 C 1.52999 * 110.72050 * 96.16768 * 24 23 14 27 27 H 1.09001 * 109.46636 * 270.14016 * 1 2 3 28 28 H 1.08997 * 109.47238 * 30.13806 * 1 2 3 29 29 H 1.09001 * 109.47113 * 150.14694 * 1 2 3 30 30 H 1.08000 * 126.29145 * 180.02562 * 6 4 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 32 32 H 1.09000 * 110.36308 * 199.90506 * 13 11 10 33 33 H 1.08996 * 110.36637 * 322.22340 * 13 11 10 34 34 H 0.97004 * 119.99536 * 179.97438 * 18 17 15 35 35 H 1.08997 * 109.88585 * 239.52133 * 23 14 13 36 36 H 1.09002 * 110.00556 * 118.43106 * 23 14 13 37 37 H 1.09002 * 109.47353 * 173.52217 * 25 24 23 38 38 H 1.09009 * 109.47012 * 293.51856 * 25 24 23 39 39 H 1.08995 * 109.47446 * 53.52103 * 25 24 23 40 40 H 1.09002 * 109.47405 * 306.47869 * 26 24 23 41 41 H 1.09003 * 109.47176 * 66.47815 * 26 24 23 42 42 H 1.09003 * 109.46946 * 186.47923 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6442 -0.0062 5 1 4.3842 1.2300 -0.0111 6 6 3.6439 -0.6980 -0.0043 7 6 2.3373 -1.1432 0.0023 8 6 1.8916 -2.5485 0.0059 9 8 0.7040 -2.8097 0.0114 10 7 2.8005 -3.5438 0.0031 11 6 2.3575 -4.9402 0.0005 12 1 1.4412 -5.0583 0.5788 13 6 2.1719 -5.4611 -1.4465 14 7 3.5312 -5.8166 -1.8960 15 6 3.9510 -5.8761 -3.1980 16 1 4.9714 -6.1481 -3.4246 17 6 3.0651 -5.5866 -4.2268 18 7 1.8218 -5.2543 -3.9506 19 14 3.6375 -5.6685 -6.0030 20 1 5.0685 -6.0634 -6.0443 21 1 2.8264 -6.6713 -6.7389 22 1 3.4728 -4.3363 -6.6381 23 6 4.3604 -6.0971 -0.7147 24 6 3.4740 -5.8788 0.5296 25 6 4.2678 -5.1993 1.6472 26 6 2.8828 -7.2047 1.0125 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 4.5298 -1.3158 -0.0075 31 1 3.7478 -3.3354 -0.0016 32 1 1.5278 -6.3405 -1.4534 33 1 1.7542 -4.6791 -2.0806 34 1 1.2029 -5.0516 -4.6696 35 1 5.2107 -5.4157 -0.6883 36 1 4.7126 -7.1283 -0.7426 37 1 3.5973 -4.9511 2.4700 38 1 5.0453 -5.8752 2.0033 39 1 4.7264 -4.2875 1.2646 40 1 2.3715 -7.6972 0.1854 41 1 3.6833 -7.8474 1.3791 42 1 2.1724 -7.0142 1.8170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974876860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:34 Heat of formation + Delta-G solvation = 59.100090 kcal Electronic energy + Delta-G solvation = -24438.655469 eV Core-core repulsion = 21034.929121 eV Total energy + Delta-G solvation = -3403.726348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28626 -39.35835 -37.55089 -33.80928 -33.15418 -32.68096 -30.69637 -30.28121 -28.08661 -27.73379 -26.68360 -25.58822 -23.69835 -22.59133 -20.67783 -19.85032 -19.47706 -18.86394 -17.93382 -16.71011 -16.11505 -15.60878 -15.15232 -14.56423 -14.30313 -13.91262 -13.84156 -13.72617 -13.45857 -13.13407 -12.76662 -12.68370 -12.63701 -12.13927 -11.92071 -11.87388 -11.69250 -11.27491 -11.15930 -10.97782 -10.85016 -10.76890 -10.37333 -10.16538 -9.90913 -9.76474 -9.66816 -9.46408 -9.28375 -8.73057 -8.65290 -8.21370 -6.78141 -5.60407 -3.03560 1.61406 2.32350 2.72699 3.40319 3.45233 3.48505 3.76313 3.95709 4.50170 4.61281 4.70597 5.01656 5.24480 5.26800 5.30666 5.54151 5.54947 5.56699 5.66580 5.83206 5.84708 5.89933 5.96867 6.05352 6.13515 6.18183 6.21176 6.29097 6.45269 6.50852 6.62141 6.65722 6.72343 6.81598 7.05260 7.11276 7.54157 7.59199 7.65354 7.93154 8.16874 8.43164 8.87616 9.24595 9.86267 10.50558 11.41851 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.006003 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.166612 B = 4662.913140 C = 5836.419143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.134 3.866 3 N -0.307 5.307 4 N -0.466 5.466 5 H 0.441 0.559 6 C 0.102 3.898 7 C -0.275 4.275 8 C 0.592 3.408 9 O -0.544 6.544 10 N -0.700 5.700 11 C 0.127 3.873 12 H 0.087 0.913 13 C 0.146 3.854 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.914 5.914 19 Si 0.910 3.090 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.144 3.856 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.391 0.609 32 H 0.020 0.980 33 H 0.114 0.886 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 6.939 12.105 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.130 5.130 4 N -0.170 5.170 5 H 0.285 0.715 6 C -0.051 4.051 7 C -0.290 4.290 8 C 0.379 3.621 9 O -0.422 6.422 10 N -0.350 5.350 11 C 0.022 3.978 12 H 0.105 0.895 13 C 0.020 3.980 14 N -0.327 5.327 15 C -0.353 4.353 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.018 3.982 24 C -0.089 4.089 25 C -0.187 4.187 26 C -0.186 4.186 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.225 0.775 32 H 0.037 0.963 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.790 8.017 11.888 14.832 hybrid contribution 1.478 -0.626 -1.093 1.942 sum 5.268 7.392 10.795 14.104 Atomic orbital electron populations 1.20355 0.85694 1.04271 1.03336 1.22485 0.97388 0.88738 0.94752 1.77110 0.86271 1.22559 1.27104 1.46022 1.07724 1.05411 1.57874 0.71480 1.23136 0.99186 0.85533 0.97228 1.20449 0.91945 0.95107 1.21476 1.17103 0.85781 0.83229 0.76015 1.90717 1.16272 1.84139 1.51099 1.45607 1.08869 1.05919 1.74571 1.22478 0.95911 0.79025 1.00433 0.89504 1.22339 0.86652 0.99517 0.89491 1.44487 1.07226 1.80477 1.00488 1.19046 0.95645 1.39790 0.80857 0.90631 1.24789 0.95794 1.02010 0.97884 1.69823 1.03698 1.52667 1.30014 0.86071 0.77557 0.77206 0.85057 1.20654 1.21775 1.21890 1.21390 0.92966 0.97470 0.86396 1.21843 0.96192 0.95619 0.95262 1.21703 0.99464 0.99775 0.97757 1.21682 1.00278 0.95650 1.00960 0.90382 0.91283 0.88179 0.79964 0.77465 0.96251 0.86877 0.93752 0.96294 0.95981 0.92779 0.92840 0.93113 0.91744 0.92804 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 9.92 36.01 0.36 -0.73 16 2 C 0.13 2.09 7.26 -82.02 -0.60 1.49 16 3 N -0.31 -4.44 12.63 33.90 0.43 -4.01 16 4 N -0.47 -5.15 7.29 30.85 0.22 -4.92 16 5 H 0.44 3.09 8.96 -182.72 -1.64 1.45 16 6 C 0.10 1.20 11.52 -16.56 -0.19 1.01 16 7 C -0.27 -4.33 6.13 -105.06 -0.64 -4.97 16 8 C 0.59 10.94 7.81 -12.52 -0.10 10.84 16 9 O -0.54 -11.70 14.61 5.27 0.08 -11.62 16 10 N -0.70 -12.06 4.61 -52.80 -0.24 -12.31 16 11 C 0.13 2.40 2.61 -65.78 -0.17 2.23 16 12 H 0.09 1.69 7.54 -51.93 -0.39 1.30 16 13 C 0.15 3.53 5.28 -2.47 -0.01 3.52 16 14 N -0.60 -14.72 3.40 -169.99 -0.58 -15.30 16 15 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 16 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 18 N -0.91 -26.96 10.09 55.49 0.56 -26.40 16 19 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.14 2.80 6.41 -3.06 -0.02 2.78 16 24 C -0.09 -1.42 0.80 -152.68 -0.12 -1.54 16 25 C -0.13 -1.63 8.07 37.16 0.30 -1.33 16 26 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.60 6.56 -51.93 -0.34 1.26 16 30 H 0.18 1.50 7.46 -52.49 -0.39 1.11 16 31 H 0.39 5.85 5.95 -40.82 -0.24 5.61 16 32 H 0.02 0.51 7.80 -51.93 -0.41 0.11 16 33 H 0.11 3.22 5.88 -51.93 -0.31 2.92 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.02 0.36 7.76 -51.93 -0.40 -0.04 16 36 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 40 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -33.93 338.22 -7.93 -41.86 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.33 Total: 5.40 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.14 Total: 5.09 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: 0.39 Total: -62.94 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.93 -7.93 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974876860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.962 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds