Wall clock time and date at job start Tue Mar 31 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30451 * 125.98879 * 2 1 4 4 N 1.39942 * 108.89551 * 180.26645 * 3 2 1 5 5 H 0.96994 * 125.75185 * 179.73358 * 4 3 2 6 6 C 1.34260 * 108.49140 * 359.74786 * 4 3 2 7 7 C 1.38039 * 107.41870 * 0.02562 * 6 4 3 8 8 C 1.47430 * 126.41506 * 179.97438 * 7 6 4 9 9 O 1.21603 * 120.00081 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99963 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27989 * 10 8 7 12 12 H 1.08998 * 110.88662 * 325.42274 * 11 10 8 13 13 C 1.54910 * 111.00601 * 89.30493 * 11 10 8 14 14 N 1.47523 * 104.78514 * 81.08510 * 13 11 10 15 15 C 1.36932 * 125.63845 * 204.08529 * 14 13 11 16 16 H 1.08004 * 120.00123 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99896 * 0.03890 * 15 14 13 18 18 N 1.31621 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47436 * 120.00230 * 19 17 15 22 22 H 1.48502 * 109.47083 * 240.00184 * 19 17 15 23 23 C 1.47027 * 108.71307 * 24.11950 * 14 13 11 24 24 C 1.54322 * 107.27236 * 358.94409 * 23 14 13 25 25 C 1.52995 * 110.71944 * 219.44505 * 24 23 14 26 26 C 1.52999 * 110.72050 * 96.16768 * 24 23 14 27 27 H 1.09001 * 109.46636 * 270.14016 * 1 2 3 28 28 H 1.08997 * 109.47238 * 30.13806 * 1 2 3 29 29 H 1.09001 * 109.47113 * 150.14694 * 1 2 3 30 30 H 1.08000 * 126.29145 * 180.02562 * 6 4 3 31 31 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 32 32 H 1.09000 * 110.36308 * 199.90506 * 13 11 10 33 33 H 1.08996 * 110.36637 * 322.22340 * 13 11 10 34 34 H 0.97004 * 119.99536 * 179.97438 * 18 17 15 35 35 H 1.08997 * 109.88585 * 239.52133 * 23 14 13 36 36 H 1.09002 * 110.00556 * 118.43106 * 23 14 13 37 37 H 1.09002 * 109.47353 * 173.52217 * 25 24 23 38 38 H 1.09009 * 109.47012 * 293.51856 * 25 24 23 39 39 H 1.08995 * 109.47446 * 53.52103 * 25 24 23 40 40 H 1.09002 * 109.47405 * 306.47869 * 26 24 23 41 41 H 1.09003 * 109.47176 * 66.47815 * 26 24 23 42 42 H 1.09003 * 109.46946 * 186.47923 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6442 -0.0062 5 1 4.3842 1.2300 -0.0111 6 6 3.6439 -0.6980 -0.0043 7 6 2.3373 -1.1432 0.0023 8 6 1.8916 -2.5485 0.0059 9 8 0.7040 -2.8097 0.0114 10 7 2.8005 -3.5438 0.0031 11 6 2.3575 -4.9402 0.0005 12 1 1.4412 -5.0583 0.5788 13 6 2.1719 -5.4611 -1.4465 14 7 3.5312 -5.8166 -1.8960 15 6 3.9510 -5.8761 -3.1980 16 1 4.9714 -6.1481 -3.4246 17 6 3.0651 -5.5866 -4.2268 18 7 1.8218 -5.2543 -3.9506 19 14 3.6375 -5.6685 -6.0030 20 1 5.0685 -6.0634 -6.0443 21 1 2.8264 -6.6713 -6.7389 22 1 3.4728 -4.3363 -6.6381 23 6 4.3604 -6.0971 -0.7147 24 6 3.4740 -5.8788 0.5296 25 6 4.2678 -5.1993 1.6472 26 6 2.8828 -7.2047 1.0125 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3633 -0.8913 -0.5116 30 1 4.5298 -1.3158 -0.0075 31 1 3.7478 -3.3354 -0.0016 32 1 1.5278 -6.3405 -1.4534 33 1 1.7542 -4.6791 -2.0806 34 1 1.2029 -5.0516 -4.6696 35 1 5.2107 -5.4157 -0.6883 36 1 4.7126 -7.1283 -0.7426 37 1 3.5973 -4.9511 2.4700 38 1 5.0453 -5.8752 2.0033 39 1 4.7264 -4.2875 1.2646 40 1 2.3715 -7.6972 0.1854 41 1 3.6833 -7.8474 1.3791 42 1 2.1724 -7.0142 1.8170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974876860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:34 Heat of formation + Delta-G solvation = 34.564410 kcal Electronic energy + Delta-G solvation = -24439.719416 eV Core-core repulsion = 21034.929121 eV Total energy + Delta-G solvation = -3404.790295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37441 -40.83533 -39.05153 -35.62102 -34.53080 -33.85639 -32.55232 -31.49970 -29.58029 -28.89720 -27.92467 -27.33741 -25.26074 -23.93382 -22.25152 -21.22081 -20.81917 -20.11451 -19.13869 -18.64541 -17.42916 -17.18487 -16.52308 -16.22788 -15.63813 -15.46683 -15.18182 -15.10562 -14.87229 -14.58612 -14.04322 -13.88944 -13.71095 -13.66192 -13.60803 -13.01571 -12.97886 -12.92713 -12.82360 -12.59367 -12.51673 -12.03614 -11.96970 -11.73765 -11.69988 -11.37238 -11.29002 -10.82264 -10.67515 -10.48723 -9.99402 -9.64480 -8.79138 -7.71393 -5.16195 0.58146 1.12131 1.45457 1.46345 1.56443 1.83030 2.38981 2.50990 2.61332 3.37896 3.52318 3.64711 3.75368 3.79606 4.04035 4.14203 4.23260 4.34736 4.48591 4.51733 4.59937 4.77722 4.82997 4.88854 4.92189 4.94783 4.98504 5.01661 5.11299 5.17003 5.26693 5.38169 5.39738 5.49797 5.53473 5.59619 5.80196 5.91167 6.28410 6.36979 6.51605 6.82167 7.13602 7.49398 7.84024 8.47858 9.28688 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.006003 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.166612 B = 4662.913140 C = 5836.419143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.117 3.883 3 N -0.322 5.322 4 N -0.445 5.445 5 H 0.461 0.539 6 C 0.134 3.866 7 C -0.316 4.316 8 C 0.587 3.413 9 O -0.586 6.586 10 N -0.690 5.690 11 C 0.140 3.860 12 H 0.078 0.922 13 C 0.154 3.846 14 N -0.617 5.617 15 C -0.227 4.227 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.947 5.947 19 Si 0.973 3.027 20 H -0.261 1.261 21 H -0.298 1.298 22 H -0.297 1.297 23 C 0.138 3.862 24 C -0.074 4.074 25 C -0.123 4.123 26 C -0.127 4.127 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.405 0.595 32 H -0.018 1.018 33 H 0.068 0.932 34 H 0.241 0.759 35 H 0.039 0.961 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 7.680 13.746 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 N -0.146 5.146 4 N -0.151 5.151 5 H 0.310 0.690 6 C -0.020 4.020 7 C -0.331 4.331 8 C 0.376 3.624 9 O -0.468 6.468 10 N -0.340 5.340 11 C 0.033 3.967 12 H 0.096 0.904 13 C 0.027 3.973 14 N -0.342 5.342 15 C -0.356 4.356 16 H 0.103 0.897 17 C -0.262 4.262 18 N -0.597 5.597 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.226 1.226 22 H -0.225 1.225 23 C 0.014 3.986 24 C -0.075 4.075 25 C -0.181 4.181 26 C -0.185 4.185 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.242 0.758 32 H 0.000 1.000 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.263 8.786 13.563 17.717 hybrid contribution 0.481 -0.861 -1.595 1.875 sum 7.744 7.926 11.968 16.310 Atomic orbital electron populations 1.20294 0.85672 1.03521 1.03900 1.22675 0.98008 0.89154 0.95178 1.77060 0.87591 1.22345 1.27639 1.46062 1.07461 1.05684 1.55899 0.69010 1.23624 0.98921 0.85847 0.93635 1.20342 0.93972 0.93529 1.25283 1.17573 0.85326 0.84524 0.74957 1.90691 1.18135 1.84953 1.53013 1.45435 1.09476 1.04893 1.74219 1.22116 0.97288 0.80581 0.96672 0.90387 1.21971 0.86261 0.96721 0.92313 1.44706 1.07869 1.80423 1.01248 1.19458 0.95854 1.38048 0.82285 0.89705 1.25599 0.95997 1.02851 1.01790 1.70139 1.04839 1.54443 1.30289 0.85070 0.77899 0.76406 0.80335 1.18562 1.22569 1.22491 1.21647 0.93392 0.97793 0.85800 1.21823 0.94694 0.95674 0.95280 1.21683 0.99691 1.00403 0.96293 1.21693 1.01277 0.95168 1.00319 0.89223 0.89829 0.90952 0.75760 0.75842 0.99991 0.91401 0.94950 0.94295 0.95859 0.91724 0.90495 0.91837 0.94949 0.90224 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.92 71.24 0.71 -1.46 16 2 C 0.12 3.60 7.26 43.52 0.32 3.92 16 3 N -0.32 -8.77 12.63 -46.67 -0.59 -9.36 16 4 N -0.44 -8.38 7.29 -56.32 -0.41 -8.79 16 5 H 0.46 4.62 8.96 -213.43 -1.91 2.71 16 6 C 0.13 2.72 11.52 84.27 0.97 3.70 16 7 C -0.32 -9.66 6.13 -20.15 -0.12 -9.78 16 8 C 0.59 21.91 7.81 86.66 0.68 22.58 16 9 O -0.59 -26.52 14.61 -4.04 -0.06 -26.58 16 10 N -0.69 -23.16 4.61 -439.21 -2.02 -25.19 16 11 C 0.14 5.32 2.61 46.38 0.12 5.44 16 12 H 0.08 3.12 7.54 -2.39 -0.02 3.10 16 13 C 0.15 7.80 5.28 86.84 0.46 8.26 16 14 N -0.62 -30.41 3.40 -691.73 -2.35 -32.76 16 15 C -0.23 -12.40 10.27 84.04 0.86 -11.54 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -58.62 10.09 21.65 0.22 -58.40 16 19 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 C 0.14 5.11 6.41 86.73 0.56 5.67 16 24 C -0.07 -2.21 0.80 -50.99 -0.04 -2.25 16 25 C -0.12 -2.54 8.07 71.98 0.58 -1.96 16 26 C -0.13 -3.55 8.41 71.98 0.61 -2.94 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.49 6.56 -2.39 -0.02 2.47 16 30 H 0.23 2.49 7.46 -2.91 -0.02 2.47 16 31 H 0.40 10.98 5.95 -92.71 -0.55 10.43 16 32 H -0.02 -1.00 7.80 -2.39 -0.02 -1.02 16 33 H 0.07 4.11 5.88 -2.39 -0.01 4.10 16 34 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.04 1.31 7.76 -2.39 -0.02 1.29 16 36 H 0.02 0.87 7.84 -2.39 -0.02 0.85 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.06 1.16 6.42 -2.39 -0.02 1.14 16 40 H 0.03 1.09 7.57 -2.39 -0.02 1.08 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.02 338.22 1.56 -77.47 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -1.41 Total: 19.26 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.16 Total: 16.09 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.16 Total: -134.50 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -79.02 1.56 -77.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974876860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.030 kcal (2) G-P(sol) polarization free energy of solvation -79.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds