Wall clock time and date at job start Tue Mar 31 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.77947 * 2 1 4 4 C 1.54332 * 110.85189 * 236.93130 * 2 1 3 5 5 N 1.47027 * 107.26234 * 219.67262 * 4 2 1 6 6 C 1.36939 * 125.64619 * 178.85252 * 5 4 2 7 7 H 1.07993 * 119.99853 * 191.31084 * 6 5 4 8 8 C 1.38811 * 119.99987 * 11.30898 * 6 5 4 9 9 N 1.31619 * 120.00045 * 206.02419 * 8 6 5 10 10 Si 1.86801 * 120.00159 * 26.29166 * 8 6 5 11 11 H 1.48506 * 109.47248 * 275.47175 * 10 8 6 12 12 H 1.48502 * 109.47108 * 35.47334 * 10 8 6 13 13 H 1.48494 * 109.47241 * 155.47150 * 10 8 6 14 14 C 1.47421 * 108.70320 * 358.58441 * 5 4 2 15 15 C 1.54909 * 104.83323 * 24.35752 * 14 5 4 16 16 H 1.09000 * 111.00454 * 204.91637 * 15 14 5 17 17 N 1.46500 * 111.00541 * 81.06422 * 15 14 5 18 18 C 1.34776 * 119.99968 * 86.45369 * 17 15 14 19 19 O 1.21280 * 120.00152 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99884 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47156 * 179.97438 * 20 18 17 22 22 N 1.30496 * 125.65217 * 305.03174 * 21 20 18 23 23 C 1.34131 * 109.25723 * 179.97438 * 22 21 20 24 24 C 1.34663 * 108.02094 * 359.97438 * 23 22 21 25 25 N 1.35044 * 125.64855 * 124.71824 * 21 20 18 26 26 H 0.97004 * 126.39643 * 359.97438 * 25 21 20 27 27 H 1.08999 * 109.47153 * 296.76511 * 1 2 3 28 28 H 1.08999 * 109.46923 * 56.76154 * 1 2 3 29 29 H 1.08994 * 109.46641 * 176.76022 * 1 2 3 30 30 H 1.08997 * 109.47599 * 183.23411 * 3 2 1 31 31 H 1.09005 * 109.46978 * 303.23697 * 3 2 1 32 32 H 1.09006 * 109.47398 * 63.23182 * 3 2 1 33 33 H 1.09001 * 109.98941 * 100.19840 * 4 2 1 34 34 H 1.08998 * 109.77772 * 339.02685 * 4 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36316 * 143.19908 * 14 5 4 37 37 H 1.09005 * 110.36825 * 265.40524 * 14 5 4 38 38 H 0.97003 * 119.99810 * 266.45180 * 17 15 14 39 39 H 1.09000 * 109.47343 * 300.00216 * 20 18 17 40 40 H 1.09008 * 109.47087 * 59.99925 * 20 18 17 41 41 H 1.08001 * 125.98816 * 179.97438 * 23 22 21 42 42 H 1.08001 * 126.59464 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5507 -0.7388 6 6 4.0045 -2.3968 -1.5016 7 1 4.7237 -3.0500 -1.0299 8 6 3.8503 -2.4151 -2.8810 9 7 4.1488 -3.5009 -3.5623 10 14 3.2262 -0.8961 -3.7713 11 1 1.7417 -0.8779 -3.7383 12 1 3.7512 0.3209 -3.1015 13 1 3.6897 -0.9236 -5.1818 14 6 3.4633 -1.2497 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 2.1849 -0.1517 2.0871 17 7 1.2271 -1.9487 1.5145 18 6 1.2971 -2.5413 2.7230 19 8 2.0656 -2.1201 3.5614 20 6 0.4213 -3.7281 3.0321 21 6 0.6917 -4.1995 4.4376 22 7 1.8594 -4.5294 4.9178 23 6 1.7222 -4.8985 6.2000 24 6 0.4201 -4.7928 6.5270 25 7 -0.2333 -4.3448 5.4107 26 1 -1.1836 -4.1661 5.3329 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3632 -1.0260 -0.0581 30 1 3.1610 1.4063 -0.0580 31 1 1.6751 1.9700 -0.8596 32 1 1.7690 1.9345 0.9176 33 1 2.3815 -0.0969 -1.9964 34 1 1.3157 -1.4687 -1.5828 35 1 4.0415 -3.5136 -4.5262 36 1 3.7961 -2.1425 1.2170 37 1 4.1946 -0.4490 0.7987 38 1 0.6127 -2.2858 0.8438 39 1 -0.6261 -3.4406 2.9400 40 1 0.6399 -4.5335 2.3307 41 1 2.5168 -5.2236 6.8554 42 1 -0.0230 -5.0157 7.4863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977385377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:16 Heat of formation + Delta-G solvation = 58.738200 kcal Electronic energy + Delta-G solvation = -24049.530998 eV Core-core repulsion = 20645.788957 eV Total energy + Delta-G solvation = -3403.742041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06824 -39.90722 -38.10881 -33.94561 -33.10240 -32.51216 -32.01267 -31.33820 -28.63771 -27.51229 -26.65412 -25.92461 -23.56027 -21.64084 -21.32106 -20.51639 -19.82964 -19.08074 -17.98328 -17.19843 -16.66463 -15.93892 -15.35384 -15.12668 -14.74773 -14.20390 -14.04976 -13.90742 -13.68773 -13.58013 -13.23654 -12.98785 -12.88614 -12.68311 -12.29539 -12.10148 -12.03824 -11.60347 -11.43587 -11.16375 -10.84289 -10.76254 -10.41518 -10.20347 -10.02040 -9.90750 -9.78564 -9.60652 -9.24481 -8.81038 -8.50576 -8.44550 -7.05533 -5.90903 -3.14783 1.95226 2.84143 2.94532 3.16213 3.34637 3.49088 3.51902 3.60420 4.27999 4.57232 4.72406 4.77707 4.91463 5.03558 5.05754 5.11735 5.16345 5.28351 5.42581 5.46517 5.56133 5.63557 5.69994 5.78637 5.89673 5.97277 6.01409 6.05343 6.18503 6.25514 6.38449 6.42498 6.57052 6.67426 6.71750 6.77076 6.96426 7.24740 7.69258 7.81594 8.14177 8.34164 8.52106 8.87837 9.73638 10.20596 11.25288 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004291 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.060461 B = 6523.124879 C = 7198.296273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.126 3.874 5 N -0.606 5.606 6 C -0.237 4.237 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.906 5.906 10 Si 0.883 3.117 11 H -0.288 1.288 12 H -0.281 1.281 13 H -0.306 1.306 14 C 0.126 3.874 15 C 0.144 3.856 16 H 0.093 0.907 17 N -0.708 5.708 18 C 0.519 3.481 19 O -0.520 6.520 20 C -0.057 4.057 21 C 0.223 3.777 22 N -0.457 5.457 23 C -0.025 4.025 24 C -0.062 4.062 25 N -0.569 5.569 26 H 0.416 0.584 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.400 0.600 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.168 0.832 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 2.660 15.397 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.001 3.999 5 N -0.333 5.333 6 C -0.364 4.364 7 H 0.112 0.888 8 C -0.179 4.179 9 N -0.550 5.550 10 Si 0.715 3.285 11 H -0.215 1.215 12 H -0.208 1.208 13 H -0.234 1.234 14 C -0.001 4.001 15 C 0.039 3.961 16 H 0.111 0.889 17 N -0.360 5.360 18 C 0.303 3.697 19 O -0.395 6.395 20 C -0.099 4.099 21 C -0.041 4.041 22 N -0.175 5.175 23 C -0.174 4.174 24 C -0.196 4.196 25 N -0.172 5.172 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.236 0.764 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.186 0.814 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.250 2.811 15.389 20.501 hybrid contribution -1.745 0.704 -0.586 1.970 sum -14.995 3.515 14.804 21.362 Atomic orbital electron populations 1.21720 0.94051 1.01574 1.01607 1.21866 0.95488 0.95795 0.95671 1.21737 1.01904 0.94046 1.01300 1.21788 0.90523 0.93602 0.94006 1.44792 1.30365 1.51783 1.06362 1.18680 1.17587 1.11768 0.88323 0.88796 1.24787 0.99885 0.97206 0.96018 1.69902 1.52273 1.25424 1.07398 0.87013 0.77941 0.85614 0.77951 1.21512 1.20772 1.23419 1.21989 0.93424 0.98789 0.85898 1.22097 0.91194 0.86392 0.96464 0.88911 1.45793 1.42768 1.32730 1.14724 1.19960 0.83686 0.83834 0.82262 1.90752 1.38061 1.63610 1.47092 1.19953 1.00884 0.98558 0.90489 1.22380 0.84725 1.04735 0.92287 1.70306 1.22438 1.15139 1.09661 1.22405 0.95192 1.06188 0.93647 1.22684 0.94579 1.09772 0.92535 1.43233 1.11035 1.52199 1.10776 0.74712 0.92523 0.92397 0.92587 0.91771 0.92411 0.92667 0.95225 0.94279 0.92859 0.92618 0.94985 0.76437 0.87814 0.86017 0.81449 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.08 37.16 0.30 -1.32 16 2 C -0.09 -1.37 0.81 -152.67 -0.12 -1.49 16 3 C -0.13 -1.91 8.39 37.16 0.31 -1.59 16 4 C 0.13 2.63 4.12 -3.06 -0.01 2.61 16 5 N -0.61 -14.50 3.28 -170.07 -0.56 -15.06 16 6 C -0.24 -6.75 10.57 -15.06 -0.16 -6.91 16 7 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 8 C 0.02 0.56 5.43 -17.43 -0.09 0.46 16 9 N -0.91 -28.03 13.97 55.49 0.78 -27.25 16 10 Si 0.88 22.64 24.30 -169.99 -4.13 18.51 16 11 H -0.29 -7.02 6.74 56.52 0.38 -6.64 16 12 H -0.28 -7.12 6.74 56.52 0.38 -6.74 16 13 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 14 C 0.13 2.60 6.61 -2.53 -0.02 2.59 16 15 C 0.14 2.38 2.56 -65.78 -0.17 2.21 16 16 H 0.09 1.51 7.63 -51.93 -0.40 1.11 16 17 N -0.71 -10.40 4.69 -51.73 -0.24 -10.64 16 18 C 0.52 7.91 7.82 -10.99 -0.09 7.83 16 19 O -0.52 -10.12 15.30 5.56 0.09 -10.03 16 20 C -0.06 -0.64 6.33 -29.04 -0.18 -0.82 16 21 C 0.22 2.94 6.96 -155.42 -1.08 1.86 16 22 N -0.46 -7.50 10.58 -10.82 -0.11 -7.61 16 23 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 24 C -0.06 -0.60 12.04 -16.56 -0.20 -0.80 16 25 N -0.57 -5.36 6.15 -10.23 -0.06 -5.42 16 26 H 0.42 2.27 8.96 -40.82 -0.37 1.90 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 6.36 -51.93 -0.33 0.31 16 30 H 0.06 1.03 7.58 -51.93 -0.39 0.63 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.69 3.42 -51.93 -0.18 0.51 16 34 H 0.04 0.84 7.49 -51.93 -0.39 0.46 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.03 0.66 7.81 -51.93 -0.41 0.26 16 38 H 0.40 5.20 6.88 -40.82 -0.28 4.92 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.12 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -37.46 336.04 -7.05 -44.51 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.14 Total: 3.87 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.73 Total: 4.07 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.20 Total: -65.99 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.46 -7.05 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977385377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.247 kcal (2) G-P(sol) polarization free energy of solvation -37.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds