Wall clock time and date at job start Tue Mar 31 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.77947 * 2 1 4 4 C 1.54332 * 110.85189 * 236.93130 * 2 1 3 5 5 N 1.47027 * 107.26234 * 219.67262 * 4 2 1 6 6 C 1.36939 * 125.64619 * 178.85252 * 5 4 2 7 7 H 1.07993 * 119.99853 * 191.31084 * 6 5 4 8 8 C 1.38811 * 119.99987 * 11.30898 * 6 5 4 9 9 N 1.31619 * 120.00045 * 206.02419 * 8 6 5 10 10 Si 1.86801 * 120.00159 * 26.29166 * 8 6 5 11 11 H 1.48506 * 109.47248 * 275.47175 * 10 8 6 12 12 H 1.48502 * 109.47108 * 35.47334 * 10 8 6 13 13 H 1.48494 * 109.47241 * 155.47150 * 10 8 6 14 14 C 1.47421 * 108.70320 * 358.58441 * 5 4 2 15 15 C 1.54909 * 104.83323 * 24.35752 * 14 5 4 16 16 H 1.09000 * 111.00454 * 204.91637 * 15 14 5 17 17 N 1.46500 * 111.00541 * 81.06422 * 15 14 5 18 18 C 1.34776 * 119.99968 * 86.45369 * 17 15 14 19 19 O 1.21280 * 120.00152 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99884 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47156 * 179.97438 * 20 18 17 22 22 N 1.30496 * 125.65217 * 305.03174 * 21 20 18 23 23 C 1.34131 * 109.25723 * 179.97438 * 22 21 20 24 24 C 1.34663 * 108.02094 * 359.97438 * 23 22 21 25 25 N 1.35044 * 125.64855 * 124.71824 * 21 20 18 26 26 H 0.97004 * 126.39643 * 359.97438 * 25 21 20 27 27 H 1.08999 * 109.47153 * 296.76511 * 1 2 3 28 28 H 1.08999 * 109.46923 * 56.76154 * 1 2 3 29 29 H 1.08994 * 109.46641 * 176.76022 * 1 2 3 30 30 H 1.08997 * 109.47599 * 183.23411 * 3 2 1 31 31 H 1.09005 * 109.46978 * 303.23697 * 3 2 1 32 32 H 1.09006 * 109.47398 * 63.23182 * 3 2 1 33 33 H 1.09001 * 109.98941 * 100.19840 * 4 2 1 34 34 H 1.08998 * 109.77772 * 339.02685 * 4 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36316 * 143.19908 * 14 5 4 37 37 H 1.09005 * 110.36825 * 265.40524 * 14 5 4 38 38 H 0.97003 * 119.99810 * 266.45180 * 17 15 14 39 39 H 1.09000 * 109.47343 * 300.00216 * 20 18 17 40 40 H 1.09008 * 109.47087 * 59.99925 * 20 18 17 41 41 H 1.08001 * 125.98816 * 179.97438 * 23 22 21 42 42 H 1.08001 * 126.59464 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0794 -0.7869 -1.2086 5 7 3.2446 -1.5507 -0.7388 6 6 4.0045 -2.3968 -1.5016 7 1 4.7237 -3.0500 -1.0299 8 6 3.8503 -2.4151 -2.8810 9 7 4.1488 -3.5009 -3.5623 10 14 3.2262 -0.8961 -3.7713 11 1 1.7417 -0.8779 -3.7383 12 1 3.7512 0.3209 -3.1015 13 1 3.6897 -0.9236 -5.1818 14 6 3.4633 -1.2497 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 2.1849 -0.1517 2.0871 17 7 1.2271 -1.9487 1.5145 18 6 1.2971 -2.5413 2.7230 19 8 2.0656 -2.1201 3.5614 20 6 0.4213 -3.7281 3.0321 21 6 0.6917 -4.1995 4.4376 22 7 1.8594 -4.5294 4.9178 23 6 1.7222 -4.8985 6.2000 24 6 0.4201 -4.7928 6.5270 25 7 -0.2333 -4.3448 5.4107 26 1 -1.1836 -4.1661 5.3329 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3632 -1.0260 -0.0581 30 1 3.1610 1.4063 -0.0580 31 1 1.6751 1.9700 -0.8596 32 1 1.7690 1.9345 0.9176 33 1 2.3815 -0.0969 -1.9964 34 1 1.3157 -1.4687 -1.5828 35 1 4.0415 -3.5136 -4.5262 36 1 3.7961 -2.1425 1.2170 37 1 4.1946 -0.4490 0.7987 38 1 0.6127 -2.2858 0.8438 39 1 -0.6261 -3.4406 2.9400 40 1 0.6399 -4.5335 2.3307 41 1 2.5168 -5.2236 6.8554 42 1 -0.0230 -5.0157 7.4863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977385377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:16 Heat of formation + Delta-G solvation = 29.388573 kcal Electronic energy + Delta-G solvation = -24050.803693 eV Core-core repulsion = 20645.788957 eV Total energy + Delta-G solvation = -3405.014736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93013 -41.25176 -39.48368 -35.70227 -34.45660 -33.41247 -33.36098 -32.91862 -30.13375 -28.51041 -27.80595 -27.60319 -25.20546 -22.79279 -22.43708 -21.84277 -21.04274 -20.38098 -19.15763 -18.75271 -17.97550 -17.40870 -16.92623 -16.40218 -15.84653 -15.68133 -15.36508 -15.17958 -14.85480 -14.80709 -14.63156 -14.35341 -14.09591 -13.84216 -13.72877 -13.35513 -13.19998 -13.11883 -12.92168 -12.87822 -12.52976 -12.29260 -11.80106 -11.73117 -11.61697 -11.14703 -10.93994 -10.89588 -10.79178 -10.77607 -10.00924 -9.30589 -9.09210 -8.17374 -5.38425 1.12230 1.28408 1.39389 1.48734 1.71450 2.00994 2.29161 2.40794 2.57141 3.00774 3.32795 3.40953 3.44672 3.75603 3.95905 4.00778 4.07369 4.28576 4.35107 4.43233 4.47388 4.53978 4.62763 4.70160 4.75228 4.82228 4.84796 4.87809 4.94627 5.03426 5.06205 5.17529 5.19999 5.31790 5.46251 5.59603 5.65071 5.86472 6.08711 6.55930 6.66908 6.75809 7.27904 7.35845 7.54472 8.08806 9.02551 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004291 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.060461 B = 6523.124879 C = 7198.296273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.133 4.133 4 C 0.119 3.881 5 N -0.619 5.619 6 C -0.236 4.236 7 H 0.051 0.949 8 C -0.035 4.035 9 N -0.953 5.953 10 Si 0.952 3.048 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.313 1.313 14 C 0.122 3.878 15 C 0.158 3.842 16 H 0.102 0.898 17 N -0.702 5.702 18 C 0.515 3.485 19 O -0.567 6.567 20 C -0.050 4.050 21 C 0.202 3.798 22 N -0.521 5.521 23 C -0.073 4.073 24 C -0.031 4.031 25 N -0.550 5.550 26 H 0.437 0.563 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.031 0.969 38 H 0.411 0.589 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.174 0.826 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.831 4.501 16.442 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.075 4.075 3 C -0.191 4.191 4 C -0.005 4.005 5 N -0.345 5.345 6 C -0.365 4.365 7 H 0.069 0.931 8 C -0.230 4.230 9 N -0.600 5.600 10 Si 0.782 3.218 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.242 1.242 14 C -0.004 4.004 15 C 0.051 3.949 16 H 0.120 0.880 17 N -0.354 5.354 18 C 0.302 3.698 19 O -0.445 6.445 20 C -0.091 4.091 21 C -0.063 4.063 22 N -0.241 5.241 23 C -0.220 4.220 24 C -0.166 4.166 25 N -0.156 5.156 26 H 0.278 0.722 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.248 0.752 39 H 0.175 0.825 40 H 0.143 0.857 41 H 0.191 0.809 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.456 4.672 16.447 24.435 hybrid contribution -0.364 0.038 -0.786 0.867 sum -17.819 4.710 15.662 24.187 Atomic orbital electron populations 1.21737 0.90521 1.02815 1.03504 1.21864 0.98101 0.95496 0.91994 1.21776 1.00424 0.93394 1.03492 1.21977 0.89051 0.93340 0.96155 1.44792 1.30955 1.51596 1.07177 1.18543 1.17228 1.11718 0.88968 0.93102 1.25426 1.01285 0.99689 0.96591 1.70026 1.54901 1.27479 1.07612 0.85895 0.78865 0.81268 0.75766 1.18737 1.20344 1.24192 1.22087 0.96658 0.97371 0.84306 1.21877 0.88835 0.87105 0.97037 0.87998 1.45756 1.42324 1.32295 1.15023 1.20696 0.83331 0.84252 0.81553 1.90734 1.40081 1.65148 1.48531 1.20023 1.02821 0.96513 0.89712 1.22558 0.84853 1.05381 0.93479 1.70192 1.25118 1.17068 1.11761 1.22764 0.97401 1.08547 0.93290 1.23286 0.93371 1.06353 0.93613 1.43155 1.11795 1.50880 1.09752 0.72158 0.89980 0.91256 0.91694 0.94138 0.91146 0.89688 0.96403 0.94592 0.92874 0.95819 0.95117 0.75187 0.82536 0.85654 0.80921 0.76353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.08 71.98 0.58 -1.95 16 2 C -0.07 -2.10 0.81 -50.99 -0.04 -2.14 16 3 C -0.13 -3.41 8.39 71.98 0.60 -2.80 16 4 C 0.12 4.77 4.12 86.73 0.36 5.13 16 5 N -0.62 -30.11 3.28 -691.97 -2.27 -32.38 16 6 C -0.24 -14.06 10.57 84.03 0.89 -13.17 16 7 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 8 C -0.04 -2.12 5.43 84.86 0.46 -1.66 16 9 N -0.95 -60.99 13.97 21.65 0.30 -60.69 16 10 Si 0.95 47.20 24.30 68.60 1.67 48.87 16 11 H -0.26 -11.78 6.74 99.48 0.67 -11.11 16 12 H -0.28 -13.41 6.74 99.48 0.67 -12.74 16 13 H -0.31 -15.77 7.11 99.48 0.71 -15.07 16 14 C 0.12 5.20 6.61 86.86 0.57 5.78 16 15 C 0.16 5.00 2.56 46.38 0.12 5.12 16 16 H 0.10 3.13 7.63 -2.39 -0.02 3.11 16 17 N -0.70 -19.42 4.69 -435.97 -2.05 -21.46 16 18 C 0.52 15.20 7.82 87.66 0.69 15.88 16 19 O -0.57 -22.21 15.30 -3.03 -0.05 -22.26 16 20 C -0.05 -1.00 6.33 29.10 0.18 -0.82 16 21 C 0.20 5.06 6.96 138.13 0.96 6.02 16 22 N -0.52 -17.43 10.58 -188.13 -1.99 -19.42 16 23 C -0.07 -1.87 11.87 83.52 0.99 -0.88 16 24 C -0.03 -0.52 12.04 83.08 1.00 0.48 16 25 N -0.55 -8.73 6.15 -186.27 -1.15 -9.88 16 26 H 0.44 2.93 8.96 -92.71 -0.83 2.10 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.18 6.36 -2.39 -0.02 1.16 16 30 H 0.04 1.22 7.58 -2.39 -0.02 1.20 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.02 0.79 3.42 -2.39 -0.01 0.79 16 34 H 0.04 1.47 7.49 -2.39 -0.02 1.45 16 35 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.03 1.32 7.81 -2.38 -0.02 1.30 16 38 H 0.41 9.60 6.88 -92.71 -0.64 8.96 16 39 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -87.99 336.04 1.34 -86.65 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.49 Total: 15.58 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 7.37 Total: 14.99 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -7.15 Total: -143.83 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.67 Total: 48.87 kcal Total: -87.99 1.34 -86.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977385377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.037 kcal (2) G-P(sol) polarization free energy of solvation -87.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds