Wall clock time and date at job start Tue Mar 31 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33317 * 126.10768 * 2 1 4 4 C 1.30850 * 109.68946 * 179.97438 * 3 2 1 5 5 N 1.34493 * 109.16411 * 359.97438 * 4 3 2 6 6 H 0.96996 * 126.47795 * 179.97438 * 5 4 3 7 7 C 1.36663 * 126.11017 * 179.69419 * 2 1 3 8 8 C 1.46769 * 126.84105 * 359.97438 * 7 2 1 9 9 O 1.21684 * 120.00321 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99916 * 180.02562 * 8 7 2 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.88623 * 37.42977 * 11 10 8 13 13 C 1.54907 * 111.00670 * 273.54428 * 11 10 8 14 14 N 1.47426 * 104.83002 * 278.93857 * 13 11 10 15 15 C 1.36942 * 125.64546 * 155.83716 * 14 13 11 16 16 H 1.07995 * 120.00023 * 353.84492 * 15 14 13 17 17 C 1.38814 * 119.99599 * 173.85470 * 15 14 13 18 18 N 1.31611 * 120.00269 * 6.80427 * 17 15 14 19 19 Si 1.86806 * 119.99571 * 186.80746 * 17 15 14 20 20 H 1.48502 * 109.46833 * 94.98437 * 19 17 15 21 21 H 1.48499 * 109.47158 * 214.97988 * 19 17 15 22 22 H 1.48501 * 109.47324 * 334.98433 * 19 17 15 23 23 C 1.47018 * 108.70708 * 335.86876 * 14 13 11 24 24 C 1.54327 * 107.26800 * 1.06216 * 23 14 13 25 25 C 1.53000 * 110.72015 * 263.82837 * 24 23 14 26 26 C 1.52998 * 110.71846 * 140.55602 * 24 23 14 27 27 H 1.08997 * 109.47715 * 90.02373 * 1 2 3 28 28 H 1.09006 * 109.47196 * 210.02676 * 1 2 3 29 29 H 1.08994 * 109.47227 * 330.01925 * 1 2 3 30 30 H 1.07996 * 125.42003 * 180.02562 * 4 3 2 31 31 H 0.97005 * 119.99541 * 359.97438 * 10 8 7 32 32 H 1.08998 * 110.36378 * 37.77427 * 13 11 10 33 33 H 1.08996 * 110.36952 * 160.09728 * 13 11 10 34 34 H 0.97004 * 119.99996 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88307 * 120.47385 * 23 14 13 36 36 H 1.09000 * 109.88561 * 241.64886 * 23 14 13 37 37 H 1.08996 * 109.47091 * 173.52372 * 25 24 23 38 38 H 1.09002 * 109.46853 * 293.52436 * 25 24 23 39 39 H 1.09005 * 109.46969 * 53.52082 * 25 24 23 40 40 H 1.08997 * 109.47355 * 306.47883 * 26 24 23 41 41 H 1.09006 * 109.47217 * 66.47894 * 26 24 23 42 42 H 1.09007 * 109.47025 * 186.47662 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6361 0.0015 6 1 4.4189 -1.1748 0.0017 7 6 2.3124 -1.1041 0.0059 8 6 1.8821 -2.5072 0.0139 9 8 0.6962 -2.7800 0.0163 10 7 2.8005 -3.4937 0.0196 11 6 2.3709 -4.8943 0.0282 12 1 1.4837 -5.0324 -0.5897 13 6 2.1230 -5.3902 1.4746 14 7 3.4620 -5.7230 1.9941 15 6 3.8207 -5.7525 3.3154 16 1 3.1235 -5.4235 4.0717 17 6 5.0806 -6.2051 3.6825 18 7 5.9767 -6.4787 2.7583 19 14 5.5040 -6.4258 5.4885 20 1 5.2705 -7.8384 5.8826 21 1 6.9315 -6.0802 5.7081 22 1 4.6468 -5.5343 6.3105 23 6 4.3486 -6.0170 0.8588 24 6 3.5199 -5.8311 -0.4297 25 6 2.9646 -7.1718 -0.9144 26 6 4.3593 -5.1646 -1.5216 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5135 30 1 4.3969 1.3745 0.0011 31 1 3.7458 -3.2762 0.0181 32 1 1.6691 -4.6009 2.0737 33 1 1.4877 -6.2759 1.4684 34 1 6.8570 -6.7954 3.0149 35 1 5.1928 -5.3275 0.8594 36 1 4.7064 -7.0446 0.9243 37 1 2.2913 -7.0037 -1.7549 38 1 3.7875 -7.8129 -1.2306 39 1 2.4194 -7.6540 -0.1029 40 1 4.7908 -4.2412 -1.1354 41 1 5.1590 -5.8391 -1.8277 42 1 3.7260 -4.9387 -2.3796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977662969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:11 Heat of formation + Delta-G solvation = 41.381861 kcal Electronic energy + Delta-G solvation = -24371.507241 eV Core-core repulsion = 20967.012572 eV Total energy + Delta-G solvation = -3404.494668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21854 -39.67345 -37.83774 -34.13572 -33.44764 -32.68072 -31.26294 -30.93195 -28.07208 -27.28429 -26.48686 -25.80863 -23.85143 -22.75272 -21.30381 -20.13594 -19.76876 -19.01934 -18.17163 -16.95567 -16.07676 -15.91728 -15.58499 -14.69999 -14.53577 -14.25341 -14.12691 -13.70288 -13.60117 -13.06458 -12.92401 -12.82489 -12.72200 -12.33607 -12.06986 -11.98666 -11.84509 -11.47297 -11.25592 -10.94615 -10.83259 -10.42156 -10.38310 -10.30062 -10.08396 -10.04330 -9.89948 -9.67718 -9.58086 -8.85731 -8.64141 -8.41789 -6.87831 -5.80316 -3.11468 1.34233 2.83113 2.87081 3.34254 3.35584 3.41733 3.42440 3.48653 4.41060 4.44354 4.83949 4.91304 5.09664 5.21852 5.25928 5.31293 5.46300 5.55678 5.69346 5.77304 5.83230 5.84844 5.94023 5.96140 6.06906 6.12082 6.15415 6.21894 6.36842 6.44986 6.54278 6.59606 6.63591 6.70524 6.94818 7.14191 7.41653 7.52739 7.66907 7.73537 7.90188 8.17332 8.36812 9.15180 9.75085 10.41338 11.31864 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.005128 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.426002 B = 5458.764924 C = 6264.843573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.090 3.910 3 N -0.502 5.502 4 C 0.215 3.785 5 N -0.553 5.553 6 H 0.424 0.576 7 C -0.084 4.084 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.701 5.701 11 C 0.140 3.860 12 H 0.090 0.910 13 C 0.126 3.874 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.189 3.811 24 C -0.104 4.104 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.214 0.786 31 H 0.395 0.605 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.252 0.748 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 8.358 -9.938 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 N -0.222 5.222 4 C -0.070 4.070 5 N -0.158 5.158 6 H 0.263 0.737 7 C -0.200 4.200 8 C 0.379 3.621 9 O -0.407 6.407 10 N -0.351 5.351 11 C 0.034 3.966 12 H 0.108 0.892 13 C -0.002 4.002 14 N -0.329 5.329 15 C -0.353 4.353 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.064 3.936 24 C -0.105 4.105 25 C -0.183 4.183 26 C -0.184 4.184 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.230 0.770 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.785 8.871 -9.797 13.748 hybrid contribution 1.824 -1.053 1.090 2.371 sum -1.960 7.818 -8.708 11.865 Atomic orbital electron populations 1.20270 0.86597 1.03640 1.02814 1.21035 0.96865 0.86640 0.99915 1.70107 1.00474 1.30549 1.21109 1.25081 0.97370 0.82134 1.02368 1.43369 1.08224 1.08823 1.55356 0.73736 1.21073 0.84226 0.95386 1.19335 1.16791 0.86014 0.82488 0.76823 1.90788 1.16008 1.82865 1.51074 1.45782 1.09114 1.06264 1.73917 1.22217 0.97151 0.78798 0.98387 0.89168 1.21945 0.89356 0.97049 0.91806 1.44439 1.04754 1.81415 1.02307 1.19064 0.98366 1.36284 0.81610 0.90557 1.24775 0.96406 1.01451 0.97633 1.69946 1.04986 1.51377 1.30635 0.86147 0.77323 0.78025 0.84602 1.21573 1.21843 1.20696 1.21281 0.90426 1.00584 0.81285 1.22209 0.95758 0.94725 0.97840 1.21670 1.00543 0.95724 1.00410 1.21657 0.99377 0.99900 0.97479 0.90975 0.89155 0.91301 0.76967 0.77029 0.93907 0.95227 0.93810 0.94122 0.93225 0.93475 0.92369 0.92060 0.93493 0.92259 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.89 36.00 0.36 -0.64 16 2 C 0.09 1.33 7.15 -82.52 -0.59 0.74 16 3 N -0.50 -7.00 11.20 -10.65 -0.12 -7.12 16 4 C 0.21 2.26 13.01 -90.58 -1.18 1.09 16 5 N -0.55 -6.13 6.07 -10.79 -0.07 -6.19 16 6 H 0.42 3.63 8.32 -40.82 -0.34 3.29 16 7 C -0.08 -1.23 7.08 -82.14 -0.58 -1.81 16 8 C 0.59 9.79 7.79 -12.81 -0.10 9.69 16 9 O -0.53 -9.96 14.56 5.20 0.08 -9.88 16 10 N -0.70 -11.10 4.69 -53.01 -0.25 -11.35 16 11 C 0.14 2.40 2.56 -65.78 -0.17 2.24 16 12 H 0.09 1.52 7.63 -51.93 -0.40 1.13 16 13 C 0.13 2.61 6.62 -2.53 -0.02 2.60 16 14 N -0.60 -14.56 3.39 -170.08 -0.58 -15.14 16 15 C -0.22 -6.10 10.26 -15.06 -0.15 -6.25 16 16 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 17 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 18 N -0.92 -25.80 10.36 55.49 0.58 -25.22 16 19 Si 0.91 21.72 29.56 -169.99 -5.02 16.70 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.19 4.16 4.55 -3.06 -0.01 4.15 16 24 C -0.10 -1.73 0.81 -152.67 -0.12 -1.86 16 25 C -0.13 -1.91 8.41 37.16 0.31 -1.60 16 26 C -0.13 -1.75 8.07 37.16 0.30 -1.45 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.31 6.46 -51.93 -0.34 0.97 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.21 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.39 5.76 6.13 -40.82 -0.25 5.51 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.62 7.80 -51.93 -0.41 0.21 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.04 0.98 7.17 -51.93 -0.37 0.61 16 36 H 0.05 1.25 7.07 -51.93 -0.37 0.88 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.01 7.57 -51.93 -0.39 0.62 16 40 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -32.38 338.51 -8.45 -40.83 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.12 Total: 5.66 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.05 Total: 6.61 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.44 Total: -65.03 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.38 -8.45 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977662969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.214 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds