Wall clock time and date at job start Tue Mar 31 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33317 * 126.10768 * 2 1 4 4 C 1.30850 * 109.68946 * 179.97438 * 3 2 1 5 5 N 1.34493 * 109.16411 * 359.97438 * 4 3 2 6 6 H 0.96996 * 126.47795 * 179.97438 * 5 4 3 7 7 C 1.36663 * 126.11017 * 179.69419 * 2 1 3 8 8 C 1.46769 * 126.84105 * 359.97438 * 7 2 1 9 9 O 1.21684 * 120.00321 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99916 * 180.02562 * 8 7 2 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.88623 * 37.42977 * 11 10 8 13 13 C 1.54907 * 111.00670 * 273.54428 * 11 10 8 14 14 N 1.47426 * 104.83002 * 278.93857 * 13 11 10 15 15 C 1.36942 * 125.64546 * 155.83716 * 14 13 11 16 16 H 1.07995 * 120.00023 * 353.84492 * 15 14 13 17 17 C 1.38814 * 119.99599 * 173.85470 * 15 14 13 18 18 N 1.31611 * 120.00269 * 6.80427 * 17 15 14 19 19 Si 1.86806 * 119.99571 * 186.80746 * 17 15 14 20 20 H 1.48502 * 109.46833 * 94.98437 * 19 17 15 21 21 H 1.48499 * 109.47158 * 214.97988 * 19 17 15 22 22 H 1.48501 * 109.47324 * 334.98433 * 19 17 15 23 23 C 1.47018 * 108.70708 * 335.86876 * 14 13 11 24 24 C 1.54327 * 107.26800 * 1.06216 * 23 14 13 25 25 C 1.53000 * 110.72015 * 263.82837 * 24 23 14 26 26 C 1.52998 * 110.71846 * 140.55602 * 24 23 14 27 27 H 1.08997 * 109.47715 * 90.02373 * 1 2 3 28 28 H 1.09006 * 109.47196 * 210.02676 * 1 2 3 29 29 H 1.08994 * 109.47227 * 330.01925 * 1 2 3 30 30 H 1.07996 * 125.42003 * 180.02562 * 4 3 2 31 31 H 0.97005 * 119.99541 * 359.97438 * 10 8 7 32 32 H 1.08998 * 110.36378 * 37.77427 * 13 11 10 33 33 H 1.08996 * 110.36952 * 160.09728 * 13 11 10 34 34 H 0.97004 * 119.99996 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88307 * 120.47385 * 23 14 13 36 36 H 1.09000 * 109.88561 * 241.64886 * 23 14 13 37 37 H 1.08996 * 109.47091 * 173.52372 * 25 24 23 38 38 H 1.09002 * 109.46853 * 293.52436 * 25 24 23 39 39 H 1.09005 * 109.46969 * 53.52082 * 25 24 23 40 40 H 1.08997 * 109.47355 * 306.47883 * 26 24 23 41 41 H 1.09006 * 109.47217 * 66.47894 * 26 24 23 42 42 H 1.09007 * 109.47025 * 186.47662 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6361 0.0015 6 1 4.4189 -1.1748 0.0017 7 6 2.3124 -1.1041 0.0059 8 6 1.8821 -2.5072 0.0139 9 8 0.6962 -2.7800 0.0163 10 7 2.8005 -3.4937 0.0196 11 6 2.3709 -4.8943 0.0282 12 1 1.4837 -5.0324 -0.5897 13 6 2.1230 -5.3902 1.4746 14 7 3.4620 -5.7230 1.9941 15 6 3.8207 -5.7525 3.3154 16 1 3.1235 -5.4235 4.0717 17 6 5.0806 -6.2051 3.6825 18 7 5.9767 -6.4787 2.7583 19 14 5.5040 -6.4258 5.4885 20 1 5.2705 -7.8384 5.8826 21 1 6.9315 -6.0802 5.7081 22 1 4.6468 -5.5343 6.3105 23 6 4.3486 -6.0170 0.8588 24 6 3.5199 -5.8311 -0.4297 25 6 2.9646 -7.1718 -0.9144 26 6 4.3593 -5.1646 -1.5216 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3634 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5135 30 1 4.3969 1.3745 0.0011 31 1 3.7458 -3.2762 0.0181 32 1 1.6691 -4.6009 2.0737 33 1 1.4877 -6.2759 1.4684 34 1 6.8570 -6.7954 3.0149 35 1 5.1928 -5.3275 0.8594 36 1 4.7064 -7.0446 0.9243 37 1 2.2913 -7.0037 -1.7549 38 1 3.7875 -7.8129 -1.2306 39 1 2.4194 -7.6540 -0.1029 40 1 4.7908 -4.2412 -1.1354 41 1 5.1590 -5.8391 -1.8277 42 1 3.7260 -4.9387 -2.3796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977662969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:10 Heat of formation + Delta-G solvation = 20.130588 kcal Electronic energy + Delta-G solvation = -24372.428765 eV Core-core repulsion = 20967.012572 eV Total energy + Delta-G solvation = -3405.416193 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.20778 -41.07600 -39.27741 -35.74923 -34.80128 -33.85006 -32.98863 -32.11145 -29.61831 -28.43262 -27.80227 -27.52155 -25.38406 -23.94476 -22.60425 -21.63762 -20.97903 -20.16705 -19.46867 -18.86526 -17.41352 -17.14076 -16.70691 -16.54181 -15.78136 -15.69504 -15.37935 -15.15859 -15.07852 -14.53250 -14.22449 -13.92343 -13.79613 -13.71950 -13.67421 -13.27198 -13.13731 -13.00995 -12.91315 -12.67303 -12.52307 -12.05687 -11.88113 -11.76943 -11.63779 -11.51391 -11.19072 -11.01780 -10.89575 -10.72514 -10.18484 -9.50660 -8.86215 -7.88657 -5.20923 0.27261 1.42885 1.44992 1.52693 1.84217 1.92155 2.15123 2.27816 2.46409 3.29801 3.51745 3.54852 3.65858 3.82479 3.94515 4.06186 4.13623 4.28662 4.39964 4.40752 4.67090 4.73037 4.74375 4.83712 4.84573 4.88351 4.96526 4.98850 5.01984 5.08129 5.19752 5.31359 5.33503 5.46269 5.51078 5.56303 5.70563 5.77475 6.17733 6.30979 6.45012 6.90788 7.09538 7.10443 7.75217 8.40297 9.21172 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.005128 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.426002 B = 5458.764924 C = 6264.843573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.079 3.921 3 N -0.533 5.533 4 C 0.239 3.761 5 N -0.544 5.544 6 H 0.436 0.564 7 C -0.110 4.110 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.696 5.696 11 C 0.153 3.847 12 H 0.102 0.898 13 C 0.123 3.877 14 N -0.618 5.618 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.053 4.053 18 N -0.940 5.940 19 Si 0.968 3.032 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.201 3.799 24 C -0.090 4.090 25 C -0.123 4.123 26 C -0.122 4.122 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.263 0.737 31 H 0.401 0.599 32 H 0.024 0.976 33 H 0.031 0.969 34 H 0.248 0.752 35 H 0.017 0.983 36 H 0.012 0.988 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 9.559 -11.079 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 N -0.254 5.254 4 C -0.045 4.045 5 N -0.150 5.150 6 H 0.277 0.723 7 C -0.226 4.226 8 C 0.381 3.619 9 O -0.438 6.438 10 N -0.346 5.346 11 C 0.047 3.953 12 H 0.120 0.880 13 C -0.003 4.003 14 N -0.344 5.344 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.247 4.247 18 N -0.589 5.589 19 Si 0.798 3.202 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.201 1.201 23 C 0.077 3.923 24 C -0.092 4.092 25 C -0.181 4.181 26 C -0.179 4.179 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.279 0.721 31 H 0.237 0.763 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.120 10.069 -10.950 15.199 hybrid contribution 1.618 -1.366 1.481 2.584 sum -1.502 8.703 -9.470 12.949 Atomic orbital electron populations 1.20243 0.86344 1.03246 1.03275 1.21319 0.97567 0.87155 0.99531 1.70137 1.01829 1.30504 1.22883 1.26087 0.97712 0.82203 0.98479 1.43333 1.07531 1.09254 1.54876 0.72298 1.20771 0.85847 0.94252 1.21742 1.17034 0.85612 0.83283 0.75992 1.90766 1.17148 1.83496 1.52379 1.45694 1.09462 1.05623 1.73840 1.22021 0.97837 0.79627 0.95781 0.87995 1.22037 0.87862 0.96534 0.93900 1.44640 1.06378 1.81303 1.02097 1.19294 0.98436 1.36249 0.83118 0.91318 1.25456 0.96405 1.01617 1.01201 1.70126 1.04917 1.51881 1.31981 0.85215 0.76881 0.77685 0.80467 1.21619 1.21744 1.20086 1.21051 0.90449 0.97550 0.83296 1.22104 0.94997 0.95871 0.96198 1.21656 1.01118 0.94592 1.00722 1.21635 0.99427 0.99925 0.96954 0.90075 0.90863 0.90255 0.72120 0.76259 0.95811 0.95156 0.94272 0.96513 0.96935 0.90436 0.91748 0.94027 0.92981 0.91672 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 9.89 71.24 0.70 -1.22 16 2 C 0.08 2.26 7.15 41.96 0.30 2.56 16 3 N -0.53 -13.75 11.20 -187.60 -2.10 -15.85 16 4 C 0.24 4.28 13.01 180.33 2.35 6.62 16 5 N -0.54 -10.81 6.07 -188.05 -1.14 -11.95 16 6 H 0.44 6.38 8.32 -92.71 -0.77 5.61 16 7 C -0.11 -3.10 7.08 40.01 0.28 -2.82 16 8 C 0.59 19.27 7.79 86.47 0.67 19.94 16 9 O -0.56 -21.02 14.56 -4.30 -0.06 -21.09 16 10 N -0.70 -21.44 4.69 -439.83 -2.06 -23.50 16 11 C 0.15 5.15 2.56 46.38 0.12 5.27 16 12 H 0.10 3.28 7.63 -2.39 -0.02 3.26 16 13 C 0.12 5.21 6.62 86.85 0.57 5.79 16 14 N -0.62 -30.55 3.39 -692.00 -2.35 -32.90 16 15 C -0.24 -13.40 10.26 84.03 0.86 -12.54 16 16 H 0.07 3.80 7.84 -2.91 -0.02 3.78 16 17 C -0.05 -2.92 5.48 84.86 0.47 -2.46 16 18 N -0.94 -53.61 10.36 21.65 0.22 -53.38 16 19 Si 0.97 45.11 29.56 68.60 2.03 47.14 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 C 0.20 9.01 4.55 86.73 0.39 9.40 16 24 C -0.09 -2.91 0.81 -50.99 -0.04 -2.96 16 25 C -0.12 -3.56 8.41 71.98 0.61 -2.95 16 26 C -0.12 -3.06 8.07 71.98 0.58 -2.48 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.16 6.46 -2.38 -0.02 2.15 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.40 11.23 6.13 -92.70 -0.57 10.67 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.03 1.29 7.80 -2.39 -0.02 1.27 16 34 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.02 0.82 7.17 -2.39 -0.02 0.80 16 36 H 0.01 0.65 7.07 -2.39 -0.02 0.63 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.35 7.57 -2.38 -0.02 1.33 16 40 H 0.05 1.25 6.35 -2.39 -0.02 1.24 16 41 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -71.83 338.51 2.11 -69.72 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.29 Total: 19.64 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 7.87 Total: 22.16 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -7.43 Total: -137.58 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.09 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.83 2.11 -69.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977662969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.852 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds