Wall clock time and date at job start Tue Mar 31 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.77955 * 2 1 4 4 C 1.54324 * 110.71890 * 123.23889 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.47837 * 4 2 1 6 6 C 1.36946 * 125.64749 * 181.10549 * 5 4 2 7 7 H 1.08000 * 119.99920 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99867 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47087 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47426 * 119.99468 * 10 8 6 13 13 H 1.48497 * 109.47269 * 239.99725 * 10 8 6 14 14 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 15 15 C 1.54909 * 104.83995 * 335.74644 * 14 5 4 16 16 H 1.09006 * 111.00238 * 155.16698 * 15 14 5 17 17 N 1.46494 * 111.04301 * 279.00829 * 15 14 5 18 18 C 1.34780 * 119.99752 * 267.21576 * 17 15 14 19 19 O 1.21278 * 120.00442 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99547 * 179.97438 * 18 17 15 21 21 N 1.46503 * 109.46612 * 179.97438 * 20 18 17 22 22 C 1.36885 * 126.39558 * 90.00285 * 21 20 18 23 23 C 1.34673 * 106.81454 * 179.97438 * 22 21 20 24 24 N 1.34125 * 108.02218 * 0.02562 * 23 22 21 25 25 C 1.30501 * 109.25695 * 359.72655 * 24 23 22 26 26 H 1.08993 * 109.46725 * 298.21689 * 1 2 3 27 27 H 1.09002 * 109.46930 * 58.21518 * 1 2 3 28 28 H 1.08996 * 109.47021 * 178.21404 * 1 2 3 29 29 H 1.09003 * 109.46999 * 181.78711 * 3 2 1 30 30 H 1.08997 * 109.47276 * 301.78407 * 3 2 1 31 31 H 1.08996 * 109.47248 * 61.78898 * 3 2 1 32 32 H 1.09002 * 109.88322 * 259.97367 * 4 2 1 33 33 H 1.09000 * 109.88025 * 20.98532 * 4 2 1 34 34 H 0.96998 * 119.99524 * 180.02562 * 9 8 6 35 35 H 1.09003 * 110.29227 * 216.94505 * 14 5 4 36 36 H 1.08996 * 110.53057 * 94.67717 * 14 5 4 37 37 H 0.96994 * 120.00233 * 87.21085 * 17 15 14 38 38 H 1.08993 * 109.47416 * 299.99904 * 20 18 17 39 39 H 1.08996 * 109.47139 * 60.00603 * 20 18 17 40 40 H 1.07999 * 126.59274 * 0.04155 * 22 21 20 41 41 H 1.08000 * 125.98399 * 180.02562 * 23 22 21 42 42 H 1.07998 * 125.65227 * 180.29674 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2438 -1.5534 0.7416 6 6 4.0005 -2.4008 1.5064 7 1 3.7556 -2.5528 2.5472 8 6 5.0830 -3.0633 0.9441 9 7 5.3817 -2.8776 -0.3242 10 14 6.1155 -4.2185 1.9874 11 1 5.5757 -4.2524 3.3704 12 1 6.0720 -5.5839 1.4051 13 1 7.5201 -3.7373 2.0165 14 6 3.4633 -1.2498 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0871 17 7 1.2266 -1.9483 -1.5150 18 6 1.2022 -2.4609 -2.7612 19 8 1.8855 -1.9677 -3.6334 20 6 0.3258 -3.6471 -3.0709 21 7 0.4762 -4.0101 -4.4823 22 6 1.3862 -4.8907 -5.0019 23 6 1.1775 -4.9272 -6.3319 24 7 0.1681 -4.0912 -6.6166 25 6 -0.2606 -3.5425 -5.5129 26 1 -0.3632 0.4859 0.9055 27 1 -0.3633 0.5413 -0.8736 28 1 -0.3633 -1.0271 -0.0320 29 1 3.1621 1.4057 -0.0320 30 1 1.6957 1.9622 -0.8735 31 1 1.7476 1.9425 0.9055 32 1 2.3741 -0.1024 1.9978 33 1 1.3120 -1.4739 1.5792 34 1 6.1379 -3.3409 -0.7172 35 1 3.7960 -2.1426 -1.2169 36 1 4.1936 -0.4486 -0.8002 37 1 0.6799 -2.3426 -0.8176 38 1 0.6203 -4.4897 -2.4453 39 1 -0.7148 -3.3921 -2.8707 40 1 2.1282 -5.4498 -4.4511 41 1 1.7268 -5.5249 -7.0442 42 1 -1.0693 -2.8307 -5.4366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977668738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:32 Heat of formation + Delta-G solvation = 60.964719 kcal Electronic energy + Delta-G solvation = -24196.476744 eV Core-core repulsion = 20792.831252 eV Total energy + Delta-G solvation = -3403.645492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93223 -39.78526 -38.01733 -33.93598 -33.83129 -33.16953 -30.79121 -29.41831 -28.75029 -27.57480 -26.52493 -25.68501 -23.46505 -21.47003 -21.21313 -20.54700 -19.97933 -18.87261 -17.41103 -17.24094 -16.76969 -15.75666 -15.26096 -14.85522 -14.53456 -13.99578 -13.95644 -13.87630 -13.73928 -13.50377 -13.30209 -13.06516 -12.83310 -12.47536 -12.15586 -11.99707 -11.85138 -11.38674 -11.26263 -11.08050 -10.86570 -10.51000 -10.27631 -10.13121 -10.07102 -9.90333 -9.88886 -9.77490 -9.28097 -8.78478 -8.52095 -8.36252 -6.90629 -5.72176 -3.15290 2.11114 2.73804 2.77011 3.32348 3.33276 3.39101 3.41911 3.52820 4.41060 4.61565 4.77527 4.80450 4.89592 4.92754 5.01732 5.15026 5.19337 5.43793 5.52111 5.57676 5.69846 5.78846 5.82141 5.93068 6.01794 6.08071 6.15415 6.30489 6.33729 6.40854 6.50057 6.59124 6.62280 6.84370 6.86597 7.22133 7.37975 7.53906 7.72897 7.83068 8.18211 8.27997 8.44416 9.12719 9.74566 10.38613 11.30925 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.005333 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.324421 B = 5248.838283 C = 6825.984744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.696 5.696 18 C 0.495 3.505 19 O -0.525 6.525 20 C 0.085 3.915 21 N -0.441 5.441 22 C -0.039 4.039 23 C -0.035 4.035 24 N -0.498 5.498 25 C 0.187 3.813 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.022 0.978 37 H 0.398 0.602 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 0.919 -2.170 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.016 3.984 5 N -0.328 5.328 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.020 3.980 15 C 0.019 3.981 16 H 0.106 0.894 17 N -0.347 5.347 18 C 0.278 3.722 19 O -0.401 6.401 20 C -0.042 4.042 21 N -0.124 5.124 22 C -0.171 4.171 23 C -0.182 4.182 24 N -0.216 5.216 25 C -0.095 4.095 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.040 0.960 37 H 0.233 0.767 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.190 0.810 41 H 0.185 0.815 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.824 1.325 -3.452 13.347 hybrid contribution 0.837 -0.847 1.915 2.255 sum -11.987 0.479 -1.538 12.094 Atomic orbital electron populations 1.21711 0.94567 1.01151 1.01347 1.21853 0.94879 0.95788 0.96325 1.21690 1.01932 0.94065 1.00968 1.21408 0.90310 0.92983 0.93655 1.44548 1.30781 1.50102 1.07331 1.19080 1.06578 1.16821 0.92889 0.90457 1.24792 0.98693 1.00605 0.96357 1.69806 1.29913 1.45940 1.10911 0.86043 0.80219 0.80386 0.79085 1.20555 1.21799 1.21717 1.22343 0.89170 1.01350 0.85115 1.22543 0.93180 0.85943 0.96451 0.89360 1.45720 1.45777 1.33104 1.10056 1.20483 0.83507 0.84889 0.83329 1.90779 1.42408 1.60565 1.46348 1.21710 1.02135 0.99080 0.81247 1.44969 1.27209 1.33045 1.07163 1.22752 0.98538 0.99769 0.96076 1.22195 0.99533 1.02870 0.93626 1.70241 1.13186 1.11518 1.26663 1.24851 1.00271 1.02580 0.81789 0.92667 0.92858 0.92959 0.91760 0.93077 0.92595 0.95844 0.96053 0.93689 0.87087 0.96046 0.76720 0.86041 0.86278 0.80998 0.81519 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.16 37.16 0.30 -1.21 16 2 C -0.09 -1.33 0.80 -152.67 -0.12 -1.45 16 3 C -0.13 -1.84 8.44 37.16 0.31 -1.53 16 4 C 0.14 2.66 6.40 -3.06 -0.02 2.64 16 5 N -0.60 -14.22 3.41 -169.81 -0.58 -14.80 16 6 C -0.23 -5.96 10.28 -15.05 -0.15 -6.11 16 7 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.30 10.11 55.49 0.56 -25.74 16 10 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.15 3.40 5.29 -2.35 -0.01 3.39 16 15 C 0.12 2.21 2.67 -65.78 -0.18 2.04 16 16 H 0.09 1.66 7.44 -51.93 -0.39 1.27 16 17 N -0.70 -10.55 4.52 -51.73 -0.23 -10.78 16 18 C 0.49 7.72 7.90 -10.98 -0.09 7.64 16 19 O -0.53 -10.76 16.07 5.56 0.09 -10.68 16 20 C 0.09 0.93 6.63 -5.19 -0.03 0.90 16 21 N -0.44 -5.91 2.24 -119.87 -0.27 -6.18 16 22 C -0.04 -0.54 11.58 -16.56 -0.19 -0.74 16 23 C -0.04 -0.51 11.87 -17.81 -0.21 -0.73 16 24 N -0.50 -7.88 11.25 -14.67 -0.16 -8.05 16 25 C 0.19 2.55 12.56 -90.37 -1.14 1.42 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 29 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 33 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.11 3.03 5.89 -51.93 -0.31 2.73 16 36 H 0.02 0.55 7.72 -51.93 -0.40 0.15 16 37 H 0.40 5.14 7.13 -40.82 -0.29 4.85 16 38 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -34.31 343.30 -8.33 -42.64 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.26 Total: 6.02 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.62 Total: 5.91 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.68 Total: -65.55 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.31 -8.33 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977668738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.609 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds